Wall clock time and date at job start Sat Apr 11 2020 07:04:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46499 * 109.46840 * 2 1
4 4 C 1.36452 * 127.16134 * 90.02716 * 3 2 1
5 5 S 1.76205 * 126.37616 * 0.02562 * 4 3 2
6 6 C 1.81004 * 99.99924 * 179.97438 * 5 4 3
7 7 C 1.52997 * 109.46855 * 180.02562 * 6 5 4
8 8 H 1.09000 * 109.47123 * 304.99241 * 7 6 5
9 9 C 1.47203 * 109.47458 * 64.99732 * 7 6 5
10 10 N 6.58894 * 115.15295 * 78.15698 * 2 1 3
11 11 C 1.52997 * 109.46946 * 185.00029 * 7 6 5
12 12 C 1.50706 * 109.47288 * 174.99723 * 11 7 6
13 13 H 1.08001 * 119.99915 * 359.97438 * 12 11 7
14 14 C 1.37881 * 120.00193 * 179.97438 * 12 11 7
15 15 N 1.31509 * 119.99546 * 0.02562 * 14 12 11
16 16 Si 1.86795 * 119.99936 * 179.97438 * 14 12 11
17 17 H 1.48508 * 109.46791 * 90.00478 * 16 14 12
18 18 H 1.48493 * 109.47010 * 209.99992 * 16 14 12
19 19 H 1.48500 * 109.47301 * 330.00380 * 16 14 12
20 20 N 1.31568 * 107.24920 * 179.97438 * 4 3 2
21 21 N 1.28506 * 110.06907 * 359.97438 * 20 4 3
22 22 C 1.31311 * 109.94091 * 359.72117 * 21 20 4
23 23 C 1.47725 * 126.47054 * 180.27805 * 22 21 20
24 24 C 1.39762 * 120.13544 * 359.91331 * 23 22 21
25 25 N 1.31909 * 119.83993 * 179.75900 * 24 23 22
26 26 C 1.32278 * 120.11716 * 0.52208 * 25 24 23
27 27 C 1.38394 * 120.28085 * 359.72765 * 26 25 24
28 28 N 1.32036 * 120.15710 * 0.02562 * 27 26 25
29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47194 * 299.99493 * 1 2 3
31 31 H 1.08992 * 109.47399 * 59.99666 * 1 2 3
32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3
33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3
34 34 H 1.09003 * 109.46979 * 299.99740 * 6 5 4
35 35 H 1.08997 * 109.47286 * 59.99922 * 6 5 4
36 36 H 1.09001 * 109.47140 * 294.99360 * 11 7 6
37 37 H 1.09002 * 109.47589 * 54.99543 * 11 7 6
38 38 H 0.97002 * 119.99711 * 180.02562 * 15 14 12
39 39 H 1.08005 * 120.07527 * 0.02562 * 24 23 22
40 40 H 1.08008 * 119.85986 * 179.70947 * 26 25 24
41 41 H 1.07995 * 119.92442 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2935 2.1582 1.0874
5 16 2.1284 1.6869 2.7773
6 6 2.6692 3.2144 3.5838
7 6 2.6090 3.0381 5.1024
8 1 1.6059 2.7253 5.3923
9 6 3.5815 2.0136 5.5165
10 7 4.3305 1.2240 5.8372
11 6 2.9458 4.3660 5.7837
12 6 2.7671 4.2258 7.2735
13 1 2.4452 3.2839 7.6925
14 6 3.0148 5.3000 8.1017
15 7 3.4063 6.4470 7.5914
16 14 2.7927 5.1263 9.9482
17 1 4.0693 4.6779 10.5603
18 1 2.4008 6.4373 10.5251
19 1 1.7315 4.1257 10.2273
20 7 2.7061 3.3244 0.6393
21 7 2.7075 3.3276 -0.6457
22 6 2.3020 2.1630 -1.0969
23 6 2.1708 1.7677 -2.5143
24 6 2.4916 2.6746 -3.5282
25 7 2.3768 2.3139 -4.7918
26 6 1.9494 1.1005 -5.0995
27 6 1.6255 0.2003 -4.0995
28 7 1.7409 0.5481 -2.8310
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 1.8934 -0.5139 0.8900
33 1 1.8934 -0.5138 -0.8900
34 1 3.6929 3.4403 3.2849
35 1 2.0147 4.0337 3.2865
36 1 3.9794 4.6345 5.5654
37 1 2.2813 5.1451 5.4098
38 1 3.5809 7.2027 8.1741
39 1 2.8367 3.6669 -3.2776
40 1 1.8525 0.8112 -6.1356
41 1 1.2767 -0.7887 -4.3573
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000359760244.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:50
Heat of formation + Delta-G solvation = 145.065460 kcal
Electronic energy + Delta-G solvation = -25697.222673 eV
Core-core repulsion = 21933.075977 eV
Total energy + Delta-G solvation = -3764.146696 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 344.111 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-43.09796 -41.38921 -36.88454 -36.12501 -34.81349 -34.07145 -33.16415 -32.30370
-30.92077 -30.15298 -27.86798 -25.80061 -25.17995 -24.31219 -24.09801 -22.58648
-21.93790 -21.48343 -18.35786 -17.99593 -17.51239 -17.10081 -16.84023 -16.61090
-16.35555 -16.06629 -15.18590 -15.00141 -14.90213 -14.48476 -14.15267 -13.99193
-13.48821 -13.37077 -13.04271 -12.89565 -12.72188 -12.29905 -12.22554 -12.05214
-11.94378 -11.76243 -11.67537 -11.53373 -11.23978 -11.11145 -10.89081 -10.78610
-10.64930 -10.55543 -10.47924 -10.31524 -9.72512 -9.63591 -9.45746 -9.32141
-8.49914 -7.73837 -6.13578 -4.18034 -0.12848 0.49120 0.89315 1.51941
1.99936 2.25499 2.48847 3.07562 3.24950 3.27798 3.34781 3.37208
3.44096 3.52679 3.68729 3.81537 4.07202 4.30083 4.37021 4.52225
4.56570 4.59884 4.61490 4.85731 4.95438 5.04281 5.12404 5.16919
5.24426 5.26745 5.38274 5.43721 5.68968 5.73064 5.78350 5.83813
6.16024 6.29291 6.33138 6.63199 7.13895 7.35945 7.43234 7.79844
8.14285 8.27056 8.29181 8.85740 9.47765 10.96999
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.025275 B = 0.002111 C = 0.002014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1107.553335 B =13260.184387 C =13898.933482
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.100 3.900
3 N -0.441 5.441
4 C 0.177 3.823
5 S -0.003 6.003
6 C -0.091 4.091
7 C 0.023 3.977
8 H 0.113 0.887
9 C 0.234 3.766
10 N -0.456 5.456
11 C 0.038 3.962
12 C -0.530 4.530
13 H 0.058 0.942
14 C 0.064 3.936
15 N -0.888 5.888
16 Si 0.893 3.107
17 H -0.280 1.280
18 H -0.285 1.285
19 H -0.272 1.272
20 N -0.280 5.280
21 N -0.247 5.247
22 C 0.207 3.793
23 C 0.159 3.841
24 C 0.099 3.901
25 N -0.430 5.430
26 C 0.054 3.946
27 C 0.059 3.941
28 N -0.435 5.435
29 H 0.081 0.919
30 H 0.066 0.934
31 H 0.062 0.938
32 H 0.096 0.904
33 H 0.116 0.884
34 H 0.105 0.895
35 H 0.119 0.881
36 H 0.031 0.969
37 H 0.045 0.955
38 H 0.264 0.736
39 H 0.185 0.815
40 H 0.175 0.825
41 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.815 -13.676 -25.293 29.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.022 4.022
3 N -0.134 5.134
4 C -0.196 4.196
5 S 0.227 5.773
6 C -0.240 4.240
7 C -0.001 4.001
8 H 0.131 0.869
9 C -0.084 4.084
10 N -0.132 5.132
11 C -0.002 4.002
12 C -0.569 4.569
13 H 0.076 0.924
14 C -0.139 4.139
15 N -0.526 5.526
16 Si 0.721 3.279
17 H -0.206 1.206
18 H -0.210 1.210
19 H -0.197 1.197
20 N -0.127 5.127
21 N -0.091 5.091
22 C -0.060 4.060
23 C 0.018 3.982
24 C -0.063 4.063
25 N -0.144 5.144
26 C -0.106 4.106
27 C -0.102 4.102
28 N -0.151 5.151
29 H 0.100 0.900
30 H 0.085 0.915
31 H 0.081 0.919
32 H 0.114 0.886
33 H 0.134 0.866
34 H 0.123 0.877
35 H 0.137 0.863
36 H 0.049 0.951
37 H 0.063 0.937
38 H 0.074 0.926
39 H 0.202 0.798
40 H 0.192 0.808
41 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -6.519 -14.349 -24.264 28.933
hybrid contribution -0.422 0.062 0.345 0.549
sum -6.941 -14.287 -23.919 28.712
Atomic orbital electron populations
1.22053 0.93234 1.03525 1.03171 1.22183 0.96505 0.77734 1.05811
1.46520 1.48644 1.14093 1.04093 1.27051 1.04251 0.91852 0.96467
1.85748 1.83042 1.22931 0.85535 1.23936 1.07322 0.96164 0.96608
1.19061 0.95721 0.95177 0.90154 0.86898 1.28932 0.93963 0.92904
0.92590 1.80971 1.10574 1.12421 1.09216 1.19234 0.98782 0.87165
0.95030 1.21081 1.47046 0.97706 0.91026 0.92364 1.24949 0.94774
0.95189 0.98970 1.69936 1.45335 1.01835 1.35484 0.86567 0.78603
0.77529 0.85229 1.20626 1.21041 1.19711 1.74887 1.19761 1.15862
1.02166 1.74275 1.15676 1.15611 1.03538 1.22043 1.07019 0.89622
0.87343 1.19065 0.98092 0.91451 0.89559 1.23847 0.94365 1.00930
0.87146 1.68602 1.09351 1.17031 1.19407 1.23962 0.94723 0.89925
1.02025 1.23754 0.96990 1.01539 0.87921 1.68331 1.10040 1.15677
1.21098 0.90023 0.91487 0.91938 0.88601 0.86600 0.87680 0.86251
0.95051 0.93697 0.92643 0.79807 0.80752 0.80568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.20 10.24 37.16 0.38 -0.82 16
2 C 0.10 0.87 6.24 -4.04 -0.03 0.84 16
3 N -0.44 -5.35 2.83 -114.09 -0.32 -5.67 16
4 C 0.18 2.51 8.07 -88.18 -0.71 1.80 16
5 S 0.00 -0.04 21.19 -107.50 -2.28 -2.32 16
6 C -0.09 -1.35 4.65 37.16 0.17 -1.17 16
7 C 0.02 0.40 2.21 -93.41 -0.21 0.19 16
8 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16
9 C 0.23 4.59 13.30 -20.80 -0.28 4.31 16
10 N -0.46 -9.71 18.53 42.10 0.78 -8.93 16
11 C 0.04 0.85 4.42 -27.88 -0.12 0.72 16
12 C -0.53 -13.67 8.60 -34.44 -0.30 -13.97 16
13 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16
14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
15 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16
16 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16
17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
20 N -0.28 -4.51 11.59 30.71 0.36 -4.16 16
21 N -0.25 -3.72 11.88 32.59 0.39 -3.33 16
22 C 0.21 2.63 7.83 -153.70 -1.20 1.42 16
23 C 0.16 1.62 6.75 -82.85 -0.56 1.06 16
24 C 0.10 0.93 10.89 -16.95 -0.18 0.74 16
25 N -0.43 -3.63 10.49 -12.71 -0.13 -3.77 16
26 C 0.05 0.29 11.21 -17.30 -0.19 0.09 16
27 C 0.06 0.30 11.22 -17.41 -0.20 0.11 16
28 N -0.43 -3.56 8.01 -9.67 -0.08 -3.64 16
29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
32 H 0.10 0.78 7.85 -51.93 -0.41 0.38 16
33 H 0.12 0.92 6.28 -51.93 -0.33 0.59 16
34 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16
35 H 0.12 1.68 8.14 -51.92 -0.42 1.26 16
36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
37 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16
38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
39 H 0.18 1.62 7.87 -52.48 -0.41 1.20 16
40 H 0.18 0.30 8.06 -52.48 -0.42 -0.12 16
41 H 0.18 0.24 8.06 -52.49 -0.42 -0.19 16
LS Contribution 378.90 15.07 5.71 5.71
Total: -1.00 -32.82 378.90 -8.29 -41.11
By element:
Atomic # 1 Polarization: 1.34 SS G_CDS: -4.91 Total: -3.57 kcal
Atomic # 6 Polarization: 0.47 SS G_CDS: -3.52 Total: -3.05 kcal
Atomic # 7 Polarization: -55.51 SS G_CDS: 1.73 Total: -53.78 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal
Atomic # 16 Polarization: -0.04 SS G_CDS: -2.28 Total: -2.32 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -32.82 -8.29 -41.11 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359760244.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 186.173 kcal
(2) G-P(sol) polarization free energy of solvation -32.817 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.357 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal
(6) G-S(sol) free energy of system = (1) + (5) 145.065 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds