Wall clock time and date at job start Sat Apr 11 2020 07:04:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46499 * 109.46840 * 2 1
4 4 C 1.36452 * 127.16134 * 90.02716 * 3 2 1
5 5 S 1.76205 * 126.37616 * 0.02562 * 4 3 2
6 6 C 1.81004 * 99.99924 * 179.97438 * 5 4 3
7 7 C 1.52997 * 109.46855 * 180.02562 * 6 5 4
8 8 H 1.09000 * 109.47123 * 304.99241 * 7 6 5
9 9 C 1.47203 * 109.47458 * 64.99732 * 7 6 5
10 10 N 6.58894 * 115.15295 * 78.15698 * 2 1 3
11 11 C 1.52997 * 109.46946 * 185.00029 * 7 6 5
12 12 C 1.50706 * 109.47288 * 174.99723 * 11 7 6
13 13 H 1.08001 * 119.99915 * 359.97438 * 12 11 7
14 14 C 1.37881 * 120.00193 * 179.97438 * 12 11 7
15 15 N 1.31509 * 119.99546 * 0.02562 * 14 12 11
16 16 Si 1.86795 * 119.99936 * 179.97438 * 14 12 11
17 17 H 1.48508 * 109.46791 * 90.00478 * 16 14 12
18 18 H 1.48493 * 109.47010 * 209.99992 * 16 14 12
19 19 H 1.48500 * 109.47301 * 330.00380 * 16 14 12
20 20 N 1.31568 * 107.24920 * 179.97438 * 4 3 2
21 21 N 1.28506 * 110.06907 * 359.97438 * 20 4 3
22 22 C 1.31311 * 109.94091 * 359.72117 * 21 20 4
23 23 C 1.47725 * 126.47054 * 180.27805 * 22 21 20
24 24 C 1.39762 * 120.13544 * 359.91331 * 23 22 21
25 25 N 1.31909 * 119.83993 * 179.75900 * 24 23 22
26 26 C 1.32278 * 120.11716 * 0.52208 * 25 24 23
27 27 C 1.38394 * 120.28085 * 359.72765 * 26 25 24
28 28 N 1.32036 * 120.15710 * 0.02562 * 27 26 25
29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47194 * 299.99493 * 1 2 3
31 31 H 1.08992 * 109.47399 * 59.99666 * 1 2 3
32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3
33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3
34 34 H 1.09003 * 109.46979 * 299.99740 * 6 5 4
35 35 H 1.08997 * 109.47286 * 59.99922 * 6 5 4
36 36 H 1.09001 * 109.47140 * 294.99360 * 11 7 6
37 37 H 1.09002 * 109.47589 * 54.99543 * 11 7 6
38 38 H 0.97002 * 119.99711 * 180.02562 * 15 14 12
39 39 H 1.08005 * 120.07527 * 0.02562 * 24 23 22
40 40 H 1.08008 * 119.85986 * 179.70947 * 26 25 24
41 41 H 1.07995 * 119.92442 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2935 2.1582 1.0874
5 16 2.1284 1.6869 2.7773
6 6 2.6692 3.2144 3.5838
7 6 2.6090 3.0381 5.1024
8 1 1.6059 2.7253 5.3923
9 6 3.5815 2.0136 5.5165
10 7 4.3305 1.2240 5.8372
11 6 2.9458 4.3660 5.7837
12 6 2.7671 4.2258 7.2735
13 1 2.4452 3.2839 7.6925
14 6 3.0148 5.3000 8.1017
15 7 3.4063 6.4470 7.5914
16 14 2.7927 5.1263 9.9482
17 1 4.0693 4.6779 10.5603
18 1 2.4008 6.4373 10.5251
19 1 1.7315 4.1257 10.2273
20 7 2.7061 3.3244 0.6393
21 7 2.7075 3.3276 -0.6457
22 6 2.3020 2.1630 -1.0969
23 6 2.1708 1.7677 -2.5143
24 6 2.4916 2.6746 -3.5282
25 7 2.3768 2.3139 -4.7918
26 6 1.9494 1.1005 -5.0995
27 6 1.6255 0.2003 -4.0995
28 7 1.7409 0.5481 -2.8310
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 1.8934 -0.5139 0.8900
33 1 1.8934 -0.5138 -0.8900
34 1 3.6929 3.4403 3.2849
35 1 2.0147 4.0337 3.2865
36 1 3.9794 4.6345 5.5654
37 1 2.2813 5.1451 5.4098
38 1 3.5809 7.2027 8.1741
39 1 2.8367 3.6669 -3.2776
40 1 1.8525 0.8112 -6.1356
41 1 1.2767 -0.7887 -4.3573
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000359760244.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:50
Heat of formation + Delta-G solvation = 126.551797 kcal
Electronic energy + Delta-G solvation = -25698.025486 eV
Core-core repulsion = 21933.075977 eV
Total energy + Delta-G solvation = -3764.949509 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 344.111 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-44.06962 -41.96838 -38.48064 -36.96784 -35.79566 -35.42414 -34.17392 -33.84682
-31.69607 -31.00526 -29.58342 -26.61867 -25.79654 -25.64555 -25.01811 -23.81565
-23.39081 -22.34855 -19.30872 -18.68592 -18.52673 -18.41380 -17.98623 -17.58442
-17.46083 -17.02276 -16.68121 -15.80943 -15.72373 -15.50628 -15.45762 -15.04088
-14.64063 -14.35481 -14.22763 -14.03070 -13.88601 -13.70138 -13.47655 -13.20659
-13.00978 -12.88512 -12.74913 -12.64580 -12.59642 -12.48499 -12.36707 -12.17112
-11.97962 -11.64184 -11.62720 -11.44552 -11.33571 -11.19982 -10.55488 -10.27929
-10.19936 -8.78239 -8.18711 -6.27735 -0.77592 -0.17890 -0.04836 0.61335
0.84230 1.37318 1.42171 1.44328 1.51227 1.53407 1.86175 1.91006
2.39829 2.42691 2.65287 3.04680 3.11333 3.18244 3.30297 3.42950
3.55262 3.76503 3.87876 3.97874 4.07374 4.11530 4.25652 4.34790
4.37684 4.47806 4.51563 4.54669 4.68107 4.72530 4.83846 4.96391
5.12830 5.27325 5.46281 5.49979 5.56344 5.78265 6.07476 6.15783
6.59171 6.66707 6.86085 7.27155 7.41015 8.92179
Molecular weight = 344.11amu
Principal moments of inertia in cm(-1)
A = 0.025275 B = 0.002111 C = 0.002014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1107.553335 B =13260.184387 C =13898.933482
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.093 3.907
3 N -0.439 5.439
4 C 0.162 3.838
5 S 0.033 5.967
6 C -0.090 4.090
7 C 0.036 3.964
8 H 0.138 0.862
9 C 0.244 3.756
10 N -0.483 5.483
11 C 0.042 3.958
12 C -0.538 4.538
13 H 0.061 0.939
14 C 0.010 3.990
15 N -0.923 5.923
16 Si 0.950 3.050
17 H -0.284 1.284
18 H -0.281 1.281
19 H -0.261 1.261
20 N -0.315 5.315
21 N -0.284 5.284
22 C 0.220 3.780
23 C 0.130 3.870
24 C 0.091 3.909
25 N -0.453 5.453
26 C 0.071 3.929
27 C 0.070 3.930
28 N -0.440 5.440
29 H 0.109 0.891
30 H 0.055 0.945
31 H 0.053 0.947
32 H 0.102 0.898
33 H 0.127 0.873
34 H 0.094 0.906
35 H 0.127 0.873
36 H 0.005 0.995
37 H 0.041 0.959
38 H 0.264 0.736
39 H 0.175 0.825
40 H 0.218 0.782
41 H 0.223 0.777
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.452 -16.536 -27.118 33.138
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.027 4.027
3 N -0.131 5.131
4 C -0.213 4.213
5 S 0.263 5.737
6 C -0.240 4.240
7 C 0.013 3.987
8 H 0.156 0.844
9 C -0.073 4.073
10 N -0.160 5.160
11 C 0.002 3.998
12 C -0.577 4.577
13 H 0.079 0.921
14 C -0.189 4.189
15 N -0.563 5.563
16 Si 0.776 3.224
17 H -0.211 1.211
18 H -0.206 1.206
19 H -0.185 1.185
20 N -0.161 5.161
21 N -0.127 5.127
22 C -0.048 4.048
23 C -0.009 4.009
24 C -0.070 4.070
25 N -0.167 5.167
26 C -0.091 4.091
27 C -0.092 4.092
28 N -0.157 5.157
29 H 0.127 0.873
30 H 0.074 0.926
31 H 0.073 0.927
32 H 0.121 0.879
33 H 0.145 0.855
34 H 0.113 0.887
35 H 0.145 0.855
36 H 0.023 0.977
37 H 0.059 0.941
38 H 0.073 0.927
39 H 0.192 0.808
40 H 0.234 0.766
41 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges -8.155 -17.192 -26.059 32.266
hybrid contribution 0.050 0.796 0.617 1.009
sum -8.105 -16.396 -25.441 31.333
Atomic orbital electron populations
1.22020 0.92012 1.04984 1.02171 1.22493 0.97451 0.76092 1.06667
1.46763 1.48109 1.14943 1.03253 1.27104 1.04944 0.92042 0.97188
1.85440 1.82840 1.20633 0.84766 1.23706 1.07212 0.98070 0.95057
1.18892 0.96221 0.92121 0.91487 0.84427 1.29269 0.93607 0.92667
0.91771 1.80970 1.11360 1.13486 1.10206 1.19032 0.97095 0.89676
0.94022 1.21514 1.45822 0.97494 0.92824 0.92113 1.25737 0.94927
0.95138 1.03076 1.70044 1.46844 1.02554 1.36830 0.85663 0.78455
0.77780 0.80510 1.21052 1.20628 1.18502 1.74774 1.21030 1.17286
1.02983 1.74180 1.17856 1.17351 1.03289 1.22511 1.04762 0.88908
0.88635 1.18880 1.00942 0.92841 0.88189 1.23713 0.94840 1.00742
0.87673 1.68648 1.10496 1.18937 1.18635 1.24766 0.91636 0.88486
1.04181 1.24565 0.95021 1.03108 0.86525 1.68318 1.09899 1.14580
1.22921 0.87258 0.92603 0.92750 0.87946 0.85477 0.88733 0.85473
0.97683 0.94095 0.92704 0.80759 0.76592 0.76043
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.98 10.24 71.98 0.74 -1.24 16
2 C 0.09 1.48 6.24 86.38 0.54 2.02 16
3 N -0.44 -10.52 2.83 -514.87 -1.46 -11.98 16
4 C 0.16 4.63 8.07 179.50 1.45 6.07 16
5 S 0.03 0.86 21.19 -56.49 -1.20 -0.34 16
6 C -0.09 -2.71 4.65 71.98 0.33 -2.37 16
7 C 0.04 1.25 2.21 -12.60 -0.03 1.22 16
8 H 0.14 4.14 8.14 -2.39 -0.02 4.12 16
9 C 0.24 9.50 13.30 89.46 1.19 10.69 16
10 N -0.48 -20.48 18.53 19.99 0.37 -20.11 16
11 C 0.04 1.90 4.42 29.85 0.13 2.03 16
12 C -0.54 -27.80 8.60 25.60 0.22 -27.58 16
13 H 0.06 3.05 7.59 -2.91 -0.02 3.03 16
14 C 0.01 0.56 5.46 84.66 0.46 1.03 16
15 N -0.92 -52.97 13.29 21.45 0.28 -52.69 16
16 Si 0.95 42.91 29.54 68.60 2.03 44.94 16
17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16
18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16
19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16
20 N -0.31 -10.56 11.59 -56.75 -0.66 -11.22 16
21 N -0.28 -8.98 11.88 -50.81 -0.60 -9.59 16
22 C 0.22 5.70 7.83 136.13 1.07 6.77 16
23 C 0.13 2.58 6.75 41.82 0.28 2.86 16
24 C 0.09 1.70 10.89 85.05 0.93 2.62 16
25 N -0.45 -6.94 10.49 -194.14 -2.04 -8.98 16
26 C 0.07 0.49 11.21 84.66 0.95 1.44 16
27 C 0.07 0.43 11.22 84.70 0.95 1.38 16
28 N -0.44 -6.19 8.01 -184.50 -1.48 -7.66 16
29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16
30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
32 H 0.10 1.49 7.85 -2.39 -0.02 1.47 16
33 H 0.13 1.74 6.28 -2.39 -0.01 1.72 16
34 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16
35 H 0.13 3.62 8.14 -2.40 -0.02 3.60 16
36 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16
37 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16
38 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16
39 H 0.18 3.38 7.87 -2.91 -0.02 3.36 16
40 H 0.22 -0.41 8.06 -2.91 -0.02 -0.44 16
41 H 0.22 -0.73 8.06 -2.91 -0.02 -0.75 16
Total: -1.00 -73.34 378.90 5.53 -67.82
By element:
Atomic # 1 Polarization: 1.79 SS G_CDS: 1.07 Total: 2.86 kcal
Atomic # 6 Polarization: -2.26 SS G_CDS: 9.21 Total: 6.95 kcal
Atomic # 7 Polarization: -116.64 SS G_CDS: -5.58 Total: -122.22 kcal
Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal
Atomic # 16 Polarization: 0.86 SS G_CDS: -1.20 Total: -0.34 kcal
Total: -73.34 5.53 -67.82 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359760244.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 194.368 kcal
(2) G-P(sol) polarization free energy of solvation -73.344 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.816 kcal
(6) G-S(sol) free energy of system = (1) + (5) 126.552 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds