Wall clock time and date at job start Sat Apr 11 2020 07:05:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86801 * 120.00264 * 2 1
4 4 H 1.48490 * 109.47261 * 179.97438 * 3 2 1
5 5 H 1.48503 * 109.46720 * 299.99758 * 3 2 1
6 6 H 1.48507 * 109.46976 * 59.99340 * 3 2 1
7 7 C 1.38951 * 119.99704 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99796 * 180.02562 * 7 2 1
9 9 N 1.37095 * 120.00323 * 0.02562 * 7 2 1
10 10 C 1.34774 * 120.00325 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99787 * 359.97438 * 10 9 7
12 12 C 1.50702 * 120.00089 * 180.02562 * 10 9 7
13 13 N 1.46508 * 109.46831 * 180.02562 * 12 10 9
14 14 C 1.34772 * 119.99535 * 179.97438 * 13 12 10
15 15 O 1.21578 * 120.00518 * 0.02562 * 14 13 12
16 16 C 1.47665 * 119.99762 * 179.97438 * 14 13 12
17 17 C 1.40072 * 119.91904 * 0.02562 * 16 14 13
18 18 C 1.36514 * 120.44298 * 179.97438 * 17 16 14
19 19 C 1.38959 * 120.16298 * 359.71635 * 18 17 16
20 20 C 1.40660 * 120.15843 * 0.57127 * 19 18 17
21 21 C 1.39215 * 119.91728 * 180.02562 * 16 14 13
22 22 N 1.35993 * 107.04838 * 179.66342 * 20 19 18
23 23 C 1.30721 * 109.53533 * 359.74377 * 22 20 19
24 24 O 1.35261 * 125.01768 * 179.97438 * 23 22 20
25 25 N 1.36451 * 109.96500 * 359.97438 * 23 22 20
26 26 C 1.46501 * 126.31798 * 180.02562 * 25 23 22
27 27 C 1.53002 * 117.49747 * 60.02812 * 26 25 23
28 28 C 1.53000 * 60.02940 * 252.51859 * 27 26 25
29 29 H 0.97007 * 119.99951 * 0.02562 * 1 2 3
30 30 H 0.97002 * 119.99840 * 0.02562 * 9 7 2
31 31 H 1.08993 * 109.46869 * 59.99998 * 12 10 9
32 32 H 1.09005 * 109.46994 * 299.99387 * 12 10 9
33 33 H 0.96993 * 120.00278 * 359.97438 * 13 12 10
34 34 H 1.08005 * 119.77745 * 0.02562 * 17 16 14
35 35 H 1.08001 * 119.91995 * 180.02562 * 18 17 16
36 36 H 1.08003 * 120.24101 * 0.04549 * 21 16 14
37 37 H 0.96702 * 114.00268 * 270.03928 * 24 23 22
38 38 H 1.09000 * 115.55824 * 205.71182 * 26 25 23
39 39 H 1.09002 * 117.49918 * 145.01894 * 27 26 25
40 40 H 1.09002 * 117.49754 * 0.02562 * 27 26 25
41 41 H 1.09008 * 117.49673 * 107.47884 * 28 27 26
42 42 H 1.08999 * 117.49942 * 252.47315 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6177 0.0000
4 1 3.7081 1.3463 0.0006
5 1 1.8894 2.3963 -1.2126
6 1 1.8893 2.3965 1.2125
7 6 2.0088 -1.2034 0.0005
8 1 3.0888 -1.2034 0.0010
9 7 1.3233 -2.3907 0.0005
10 6 1.9971 -3.5579 0.0005
11 8 3.2101 -3.5579 0.0001
12 6 1.2436 -4.8630 0.0000
13 7 2.1956 -5.9765 0.0007
14 6 1.7463 -7.2471 0.0009
15 8 0.5510 -7.4693 -0.0001
16 6 2.7058 -8.3695 0.0010
17 6 4.0826 -8.1117 0.0016
18 6 4.9792 -9.1412 0.0023
19 6 4.5317 -10.4567 0.0084
20 6 3.1527 -10.7341 0.0018
21 6 2.2399 -9.6814 0.0007
22 7 3.0183 -12.0874 0.0025
23 6 4.2010 -12.6442 0.0034
24 8 4.4314 -13.9770 0.0048
25 7 5.1688 -11.6822 0.0028
26 6 6.6163 -11.9078 0.0030
27 6 7.2099 -12.6872 -1.1722
28 6 7.1079 -13.3431 0.2064
29 1 -0.4850 0.8401 -0.0004
30 1 0.3533 -2.3906 -0.0002
31 1 0.6173 -4.9204 -0.8902
32 1 0.6166 -4.9209 0.8898
33 1 3.1492 -5.7993 0.0011
34 1 4.4373 -7.0915 0.0023
35 1 6.0388 -8.9327 0.0031
36 1 1.1786 -9.8816 -0.0005
37 1 4.4975 -14.3639 0.8885
38 1 7.2173 -11.1045 0.4291
39 1 8.2016 -12.3968 -1.5191
40 1 6.5235 -13.0318 -1.9456
41 1 6.3540 -14.1190 0.3400
42 1 8.0324 -13.4845 0.7661
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597652038.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:47
Heat of formation + Delta-G solvation = 5.392636 kcal
Electronic energy + Delta-G solvation = -28106.995123 eV
Core-core repulsion = 23861.746136 eV
Total energy + Delta-G solvation = -4245.248986 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.132 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-42.66713 -39.90069 -38.70776 -38.06852 -37.62263 -36.39462 -34.50418 -33.71511
-33.11215 -31.39914 -30.38674 -29.66015 -27.47775 -24.79822 -24.12485 -23.47826
-23.29926 -22.90804 -20.74487 -20.50616 -19.65023 -18.68663 -18.32166 -18.05159
-17.81367 -16.84607 -16.26880 -15.89452 -15.51718 -15.28388 -15.19843 -14.77788
-14.61505 -14.39825 -14.32225 -14.19227 -13.94098 -13.82457 -13.41360 -13.00551
-12.76404 -12.42908 -12.23386 -12.01101 -11.94385 -11.64327 -11.53826 -11.41603
-11.34403 -11.14794 -10.46297 -10.41496 -10.33356 -10.30147 -9.85251 -9.65473
-8.88061 -8.64490 -8.58606 -8.41393 -8.10851 -6.52080 -3.94068 0.55412
0.77583 1.71576 2.14103 2.84617 2.97625 3.09886 3.13506 3.22104
3.27914 3.37429 3.71784 3.79614 3.82020 3.99584 4.10816 4.11064
4.21909 4.53564 4.75587 4.83383 4.87086 4.91499 4.95547 5.08832
5.13160 5.16644 5.23507 5.37205 5.42731 5.75437 5.89499 5.92600
5.96667 6.05885 6.10584 6.13708 6.19536 6.41112 6.65433 7.02329
7.36644 7.45669 7.78598 7.91478 8.40102 8.45312 9.03943 9.38682
9.86218 10.64795
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.026017 B = 0.001815 C = 0.001706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1075.964441 B =15421.564475 C =16409.317359
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.025 3.975
3 Si 0.933 3.067
4 H -0.267 1.267
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.305 4.305
8 H 0.106 0.894
9 N -0.549 5.549
10 C 0.428 3.572
11 O -0.598 6.598
12 C 0.109 3.891
13 N -0.701 5.701
14 C 0.560 3.440
15 O -0.544 6.544
16 C -0.134 4.134
17 C -0.064 4.064
18 C -0.112 4.112
19 C 0.080 3.920
20 C 0.045 3.955
21 C 0.006 3.994
22 N -0.474 5.474
23 C 0.446 3.554
24 O -0.440 6.440
25 N -0.463 5.463
26 C 0.055 3.945
27 C -0.174 4.174
28 C -0.180 4.180
29 H 0.274 0.726
30 H 0.396 0.604
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.410 0.590
34 H 0.142 0.858
35 H 0.131 0.869
36 H 0.148 0.852
37 H 0.407 0.593
38 H 0.144 0.856
39 H 0.111 0.889
40 H 0.103 0.897
41 H 0.116 0.884
42 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.417 -25.834 1.477 29.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.178 4.178
3 Si 0.759 3.241
4 H -0.191 1.191
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.434 4.434
8 H 0.124 0.876
9 N -0.183 5.183
10 C 0.214 3.786
11 O -0.485 6.485
12 C -0.019 4.019
13 N -0.356 5.356
14 C 0.346 3.654
15 O -0.423 6.423
16 C -0.140 4.140
17 C -0.084 4.084
18 C -0.133 4.133
19 C -0.029 4.029
20 C -0.073 4.073
21 C -0.014 4.014
22 N -0.204 5.204
23 C 0.143 3.857
24 O -0.242 6.242
25 N -0.164 5.164
26 C -0.048 4.048
27 C -0.212 4.212
28 C -0.218 4.218
29 H 0.084 0.916
30 H 0.230 0.770
31 H 0.104 0.896
32 H 0.104 0.896
33 H 0.249 0.751
34 H 0.160 0.840
35 H 0.149 0.851
36 H 0.166 0.834
37 H 0.266 0.734
38 H 0.162 0.838
39 H 0.130 0.870
40 H 0.122 0.878
41 H 0.134 0.866
42 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 12.562 -26.283 0.880 29.144
hybrid contribution 1.134 1.093 0.461 1.641
sum 13.696 -25.190 1.341 28.704
Atomic orbital electron populations
1.69624 1.06009 1.28435 1.49304 1.25334 0.95674 0.99956 0.96808
0.85755 0.79661 0.80825 0.77820 1.19143 1.20623 1.20629 1.19778
0.93488 0.81972 1.48166 0.87597 1.41801 1.09524 1.04476 1.62514
1.19733 0.88282 0.84989 0.85609 1.90487 1.13709 1.86846 1.57488
1.20989 0.91828 0.85558 1.03519 1.45593 1.11681 1.04460 1.73827
1.17980 0.87931 0.82555 0.76898 1.90777 1.16040 1.84861 1.50594
1.19630 0.93436 0.93124 1.07801 1.20902 0.91557 0.99438 0.96501
1.19566 1.00366 0.87909 1.05460 1.18762 0.92726 0.86558 1.04831
1.18570 0.91116 0.90071 1.07508 1.20364 0.99842 0.88282 0.92940
1.70726 1.20435 1.06243 1.22994 1.20313 0.82502 0.82442 1.00428
1.84833 1.91863 1.12922 1.34621 1.45059 1.05688 1.05098 1.60554
1.21995 0.78544 0.98083 1.06218 1.23463 1.03145 1.02385 0.92224
1.23673 1.04029 0.93976 1.00099 0.91625 0.76990 0.89572 0.89581
0.75055 0.84007 0.85147 0.83399 0.73365 0.83828 0.87041 0.87810
0.86584 0.87030
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.71 13.05 55.50 0.72 -22.98 16
2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16
3 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16
4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16
5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16
6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16
7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16
8 H 0.11 2.96 7.16 -52.48 -0.38 2.59 16
9 N -0.55 -13.43 5.29 -10.96 -0.06 -13.49 16
10 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16
11 O -0.60 -14.93 15.24 5.54 0.08 -14.84 16
12 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16
13 N -0.70 -11.62 5.48 -62.48 -0.34 -11.96 16
14 C 0.56 9.14 7.76 -12.41 -0.10 9.05 16
15 O -0.54 -10.41 16.32 5.30 0.09 -10.32 16
16 C -0.13 -1.83 5.87 -105.00 -0.62 -2.45 16
17 C -0.06 -0.71 9.47 -39.52 -0.37 -1.09 16
18 C -0.11 -1.11 9.96 -39.94 -0.40 -1.50 16
19 C 0.08 0.90 6.87 -83.85 -0.58 0.32 16
20 C 0.04 0.59 7.21 -84.70 -0.61 -0.02 16
21 C 0.01 0.08 9.64 -38.81 -0.37 -0.29 16
22 N -0.47 -6.27 11.31 -12.25 -0.14 -6.41 16
23 C 0.45 4.52 8.83 -88.89 -0.79 3.74 16
24 O -0.44 -2.92 10.94 -17.48 -0.19 -3.11 16
25 N -0.46 -4.25 3.15 -108.78 -0.34 -4.59 16
26 C 0.06 0.32 6.88 -67.89 -0.47 -0.15 16
27 C -0.17 -0.84 10.40 -26.73 -0.28 -1.12 16
28 C -0.18 -0.65 9.87 -26.70 -0.26 -0.91 16
29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16
30 H 0.40 9.35 7.90 -40.82 -0.32 9.02 16
31 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16
32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16
33 H 0.41 6.48 5.44 -40.82 -0.22 6.26 16
34 H 0.14 1.42 6.36 -52.48 -0.33 1.09 16
35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16
36 H 0.15 2.07 7.63 -52.48 -0.40 1.67 16
37 H 0.41 0.62 8.57 45.56 0.39 1.01 16
38 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16
39 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16
40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
41 H 0.12 0.38 5.01 -51.92 -0.26 0.12 16
42 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16
LS Contribution 366.90 15.07 5.53 5.53
Total: -1.00 -34.67 366.90 -8.49 -43.15
By element:
Atomic # 1 Polarization: 18.01 SS G_CDS: -3.62 Total: 14.39 kcal
Atomic # 6 Polarization: 14.51 SS G_CDS: -5.20 Total: 9.32 kcal
Atomic # 7 Polarization: -59.28 SS G_CDS: -0.16 Total: -59.44 kcal
Atomic # 8 Polarization: -28.26 SS G_CDS: -0.02 Total: -28.28 kcal
Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -34.67 -8.49 -43.15 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597652038.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.547 kcal
(2) G-P(sol) polarization free energy of solvation -34.666 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.393 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.41 seconds