Wall clock time and date at job start Sat Apr 11 2020 07:06:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35827 * 116.99857 * 2 1
4 4 C 1.39946 * 119.61413 * 359.97438 * 3 2 1
5 5 C 1.35868 * 121.01794 * 180.02562 * 4 3 2
6 6 C 1.40902 * 119.80818 * 359.97438 * 5 4 3
7 7 N 1.33242 * 120.90761 * 179.97438 * 6 5 4
8 8 C 1.32002 * 121.30672 * 179.97438 * 7 6 5
9 9 C 1.47992 * 119.25011 * 180.02562 * 8 7 6
10 10 O 1.21571 * 119.99745 * 174.17276 * 9 8 7
11 11 N 1.34769 * 119.99993 * 354.17756 * 9 8 7
12 12 C 1.36716 * 119.99979 * 4.79381 * 11 9 8
13 13 H 1.08004 * 120.00003 * 311.86816 * 12 11 9
14 14 C 1.39155 * 120.00327 * 131.87163 * 12 11 9
15 15 N 1.31292 * 119.99837 * 3.29516 * 14 12 11
16 16 Si 1.86802 * 120.00062 * 183.30362 * 14 12 11
17 17 H 1.48496 * 109.47023 * 89.99557 * 16 14 12
18 18 H 1.48498 * 109.47012 * 209.99602 * 16 14 12
19 19 H 1.48501 * 109.47115 * 329.99316 * 16 14 12
20 20 C 1.46498 * 120.00384 * 184.79009 * 11 9 8
21 21 C 1.52999 * 109.47135 * 84.46678 * 20 11 9
22 22 C 1.50692 * 109.47419 * 180.02562 * 21 20 11
23 23 O 1.20821 * 119.99984 * 0.02562 * 22 21 20
24 24 O 1.34233 * 120.00126 * 180.02562 * 22 21 20
25 25 C 1.40426 * 121.50112 * 0.04877 * 8 7 6
26 26 C 1.36398 * 119.80823 * 359.97338 * 25 8 7
27 27 C 1.40874 * 118.26478 * 0.02562 * 26 25 8
28 28 C 1.36675 * 119.60316 * 180.02562 * 3 2 1
29 29 H 1.09008 * 109.47047 * 300.00557 * 1 2 3
30 30 H 1.09001 * 109.46854 * 59.99934 * 1 2 3
31 31 H 1.09001 * 109.47786 * 180.02562 * 1 2 3
32 32 H 1.08001 * 119.48948 * 359.97438 * 4 3 2
33 33 H 1.08003 * 120.09625 * 179.97438 * 5 4 3
34 34 H 0.97001 * 120.00127 * 179.97438 * 15 14 12
35 35 H 1.08996 * 109.47671 * 204.46855 * 20 11 9
36 36 H 1.09000 * 109.46822 * 324.47529 * 20 11 9
37 37 H 1.09000 * 109.47427 * 300.00780 * 21 20 11
38 38 H 1.09009 * 109.46733 * 60.00104 * 21 20 11
39 39 H 0.96700 * 117.00246 * 180.02562 * 24 22 21
40 40 H 1.07998 * 120.09673 * 180.24788 * 25 8 7
41 41 H 1.08001 * 120.87095 * 179.97438 * 26 25 8
42 42 H 1.07998 * 120.18526 * 359.97438 * 28 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0456 1.2102 0.0000
4 6 1.2755 2.3788 -0.0005
5 6 1.8625 3.6041 -0.0011
6 6 3.2677 3.7076 -0.0005
7 7 3.8663 4.8980 -0.0016
8 6 5.1820 5.0042 -0.0006
9 6 5.7989 6.3494 -0.0012
10 8 7.0043 6.4653 0.1066
11 7 5.0245 7.4458 -0.1212
12 6 3.6632 7.3221 -0.1436
13 1 3.1980 6.5904 -0.7877
14 6 2.8768 8.1388 0.6632
15 7 3.4375 9.0717 1.3974
16 14 1.0235 7.9077 0.7018
17 1 0.6681 6.9353 1.7663
18 1 0.3680 9.2103 0.9822
19 1 0.5613 7.3938 -0.6126
20 6 5.6414 8.7703 -0.2274
21 6 6.0179 9.0422 -1.6852
22 6 6.6530 10.4043 -1.7945
23 8 6.7909 11.0875 -0.8075
24 8 7.0656 10.8587 -2.9883
25 6 6.0097 3.8698 0.0006
26 6 5.4532 2.6245 0.0012
27 6 4.0482 2.5216 0.0002
28 6 3.4110 1.2724 -0.0005
29 1 -0.3633 0.5140 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3635 -1.0276 0.0005
32 1 0.1980 2.3053 -0.0014
33 1 1.2537 4.4962 -0.0019
34 1 2.8893 9.6413 1.9596
35 1 4.9359 9.5282 0.1130
36 1 6.5379 8.8043 0.3917
37 1 6.7235 8.2843 -2.0257
38 1 5.1214 9.0081 -2.3044
39 1 7.4673 11.7381 -3.0084
40 1 7.0837 3.9830 0.0054
41 1 6.0734 1.7403 0.0017
42 1 3.9959 0.3645 -0.0005
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001599634745.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:06
Heat of formation + Delta-G solvation = -85.335397 kcal
Electronic energy + Delta-G solvation = -29655.154944 eV
Core-core repulsion = 25373.678944 eV
Total energy + Delta-G solvation = -4281.476000 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.125 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.71567 -39.82109 -39.32845 -38.20483 -35.84422 -35.52387 -35.00260 -33.19424
-31.97727 -30.75613 -30.13218 -29.49477 -27.19687 -25.20721 -24.96691 -23.65723
-22.67506 -21.91484 -20.70762 -19.54221 -18.52834 -17.91788 -17.57653 -17.49920
-16.24688 -15.96587 -15.88028 -15.83425 -15.50249 -15.27925 -14.64368 -14.30953
-14.24388 -14.11667 -13.93350 -13.41105 -13.14173 -13.03163 -12.76202 -12.64212
-12.54064 -12.41785 -12.05361 -11.79309 -11.63584 -11.25006 -11.16850 -11.10763
-11.09720 -10.77089 -10.49144 -10.37727 -10.14896 -10.10843 -10.05846 -9.24055
-9.05763 -8.40487 -8.36640 -7.69075 -7.43879 -6.33491 -4.08781 0.63567
1.01162 2.30288 2.68908 2.88407 3.15209 3.19150 3.19378 3.22436
3.43537 3.92437 4.12168 4.44190 4.65319 4.69840 4.76937 4.89494
4.97945 4.98609 5.06332 5.15784 5.28292 5.34496 5.35581 5.57967
5.63483 5.80005 5.82842 5.96034 6.00152 6.13710 6.22809 6.30792
6.33285 6.35784 6.56737 6.67724 6.82833 6.88416 7.04249 7.32456
7.36550 7.64344 7.89774 8.32365 8.36830 8.52707 9.05099 9.34497
9.78624 10.65968
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.013746 B = 0.003406 C = 0.002908
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2036.423203 B = 8217.708298 C = 9624.857510
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.319 6.319
3 C 0.121 3.879
4 C -0.188 4.188
5 C -0.038 4.038
6 C 0.087 3.913
7 N -0.386 5.386
8 C 0.128 3.872
9 C 0.508 3.492
10 O -0.598 6.598
11 N -0.408 5.408
12 C -0.299 4.299
13 H 0.116 0.884
14 C 0.042 3.958
15 N -0.866 5.866
16 Si 0.919 3.081
17 H -0.275 1.275
18 H -0.285 1.285
19 H -0.266 1.266
20 C 0.119 3.881
21 C -0.125 4.125
22 C 0.484 3.516
23 O -0.512 6.512
24 O -0.525 6.525
25 C -0.112 4.112
26 C -0.092 4.092
27 C -0.062 4.062
28 C -0.148 4.148
29 H 0.055 0.945
30 H 0.055 0.945
31 H 0.097 0.903
32 H 0.132 0.868
33 H 0.139 0.861
34 H 0.272 0.728
35 H 0.129 0.871
36 H 0.065 0.935
37 H 0.096 0.904
38 H 0.104 0.896
39 H 0.401 0.599
40 H 0.143 0.857
41 H 0.136 0.864
42 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.411 -11.020 -5.557 13.106
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.233 6.233
3 C 0.076 3.924
4 C -0.209 4.209
5 C -0.057 4.057
6 C -0.036 4.036
7 N -0.097 5.097
8 C -0.026 4.026
9 C 0.297 3.703
10 O -0.484 6.484
11 N -0.123 5.123
12 C -0.429 4.429
13 H 0.133 0.867
14 C -0.164 4.164
15 N -0.503 5.503
16 Si 0.745 3.255
17 H -0.201 1.201
18 H -0.211 1.211
19 H -0.191 1.191
20 C -0.005 4.005
21 C -0.164 4.164
22 C 0.326 3.674
23 O -0.399 6.399
24 O -0.337 6.337
25 C -0.132 4.132
26 C -0.118 4.118
27 C -0.064 4.064
28 C -0.167 4.167
29 H 0.074 0.926
30 H 0.074 0.926
31 H 0.116 0.884
32 H 0.149 0.851
33 H 0.157 0.843
34 H 0.082 0.918
35 H 0.147 0.853
36 H 0.084 0.916
37 H 0.115 0.885
38 H 0.122 0.878
39 H 0.259 0.741
40 H 0.161 0.839
41 H 0.154 0.846
42 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -4.553 -10.438 -5.074 12.467
hybrid contribution -0.512 -0.099 0.176 0.550
sum -5.065 -10.537 -4.898 12.676
Atomic orbital electron populations
1.23043 0.78641 1.03702 1.01460 1.86047 1.21218 1.27023 1.89024
1.18651 0.92139 0.83952 0.97608 1.20991 1.00198 0.92063 1.07614
1.20778 0.92700 0.97532 0.94686 1.19292 0.94243 0.88823 1.01292
1.69211 1.10528 1.22345 1.07626 1.21518 0.89051 0.94742 0.97269
1.18155 0.86137 0.83945 0.82096 1.90642 1.14402 1.86382 1.57009
1.43366 1.06596 1.03543 1.58836 1.20053 0.79593 1.20428 1.22818
0.86655 1.25622 1.00466 0.95538 0.94758 1.69656 1.36479 1.18423
1.25726 0.86058 0.82628 0.77759 0.79029 1.20058 1.21121 1.19077
1.21482 1.00230 0.88319 0.90446 1.21858 1.01524 0.89751 1.03290
1.23715 0.74601 0.89270 0.79816 1.90709 1.52627 1.58541 1.38070
1.84589 1.73633 1.39340 1.36131 1.21822 1.02035 0.91938 0.97455
1.21192 0.92964 0.97853 0.99785 1.18644 0.94343 0.93378 1.00081
1.19986 0.91511 0.97148 1.08089 0.92623 0.92614 0.88449 0.85072
0.84336 0.91775 0.85322 0.91616 0.88547 0.87769 0.74128 0.83896
0.84592 0.85034
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 9.80 101.05 0.99 1.20 16
2 O -0.32 -3.78 10.47 -19.20 -0.20 -3.98 16
3 C 0.12 1.63 6.64 -39.51 -0.26 1.37 16
4 C -0.19 -2.49 8.93 -39.79 -0.36 -2.84 16
5 C -0.04 -0.61 9.98 -39.42 -0.39 -1.00 16
6 C 0.09 1.59 6.61 -84.81 -0.56 1.03 16
7 N -0.39 -8.19 6.28 -7.53 -0.05 -8.24 16
8 C 0.13 2.75 6.67 -82.97 -0.55 2.19 16
9 C 0.51 12.34 7.57 -12.27 -0.09 12.24 16
10 O -0.60 -15.30 15.94 5.30 0.08 -15.22 16
11 N -0.41 -10.05 2.50 -115.85 -0.29 -10.34 16
12 C -0.30 -7.35 7.45 -15.03 -0.11 -7.46 16
13 H 0.12 2.78 5.97 -52.48 -0.31 2.46 16
14 C 0.04 1.04 5.35 -17.44 -0.09 0.94 16
15 N -0.87 -22.77 10.99 55.51 0.61 -22.16 16
16 Si 0.92 19.32 29.56 -169.99 -5.02 14.30 16
17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
18 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16
19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16
20 C 0.12 2.81 4.17 -4.04 -0.02 2.79 16
21 C -0.13 -2.43 6.10 -27.89 -0.17 -2.60 16
22 C 0.48 8.79 8.33 36.00 0.30 9.09 16
23 O -0.51 -10.87 16.74 -18.75 -0.31 -11.18 16
24 O -0.53 -7.41 13.42 -39.27 -0.53 -7.94 16
25 C -0.11 -2.00 9.54 -39.42 -0.38 -2.37 16
26 C -0.09 -1.40 9.88 -39.25 -0.39 -1.79 16
27 C -0.06 -1.00 5.75 -106.72 -0.61 -1.61 16
28 C -0.15 -2.07 9.68 -39.40 -0.38 -2.45 16
29 H 0.06 0.39 7.64 -51.92 -0.40 0.00 16
30 H 0.06 0.38 7.63 -51.93 -0.40 -0.01 16
31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.13 1.33 6.22 -52.49 -0.33 1.01 16
33 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16
34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
35 H 0.13 3.32 5.48 -51.93 -0.28 3.03 16
36 H 0.07 1.67 7.49 -51.93 -0.39 1.28 16
37 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16
38 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16
39 H 0.40 3.72 9.10 45.56 0.41 4.13 16
40 H 0.14 2.41 7.61 -52.49 -0.40 2.01 16
41 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16
42 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16
LS Contribution 363.69 15.07 5.48 5.48
Total: -1.00 -32.01 363.69 -7.07 -39.08
By element:
Atomic # 1 Polarization: 15.23 SS G_CDS: -3.76 Total: 11.46 kcal
Atomic # 6 Polarization: 11.81 SS G_CDS: -3.08 Total: 8.74 kcal
Atomic # 7 Polarization: -41.01 SS G_CDS: 0.27 Total: -40.74 kcal
Atomic # 8 Polarization: -37.36 SS G_CDS: -0.96 Total: -38.31 kcal
Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -32.01 -7.07 -39.08 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001599634745.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.259 kcal
(2) G-P(sol) polarization free energy of solvation -32.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.335 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds