Wall clock time and date at job start Sat Apr 11 2020 07:06:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35827 * 116.99857 * 2 1
4 4 C 1.39946 * 119.61413 * 359.97438 * 3 2 1
5 5 C 1.35868 * 121.01794 * 180.02562 * 4 3 2
6 6 C 1.40902 * 119.80818 * 359.97438 * 5 4 3
7 7 N 1.33242 * 120.90761 * 179.97438 * 6 5 4
8 8 C 1.32002 * 121.30672 * 179.97438 * 7 6 5
9 9 C 1.47992 * 119.25011 * 180.02562 * 8 7 6
10 10 O 1.21571 * 119.99745 * 174.17276 * 9 8 7
11 11 N 1.34769 * 119.99993 * 354.17756 * 9 8 7
12 12 C 1.36716 * 119.99979 * 4.79381 * 11 9 8
13 13 H 1.08004 * 120.00003 * 311.86816 * 12 11 9
14 14 C 1.39155 * 120.00327 * 131.87163 * 12 11 9
15 15 N 1.31292 * 119.99837 * 3.29516 * 14 12 11
16 16 Si 1.86802 * 120.00062 * 183.30362 * 14 12 11
17 17 H 1.48496 * 109.47023 * 89.99557 * 16 14 12
18 18 H 1.48498 * 109.47012 * 209.99602 * 16 14 12
19 19 H 1.48501 * 109.47115 * 329.99316 * 16 14 12
20 20 C 1.46498 * 120.00384 * 184.79009 * 11 9 8
21 21 C 1.52999 * 109.47135 * 84.46678 * 20 11 9
22 22 C 1.50692 * 109.47419 * 180.02562 * 21 20 11
23 23 O 1.20821 * 119.99984 * 0.02562 * 22 21 20
24 24 O 1.34233 * 120.00126 * 180.02562 * 22 21 20
25 25 C 1.40426 * 121.50112 * 0.04877 * 8 7 6
26 26 C 1.36398 * 119.80823 * 359.97338 * 25 8 7
27 27 C 1.40874 * 118.26478 * 0.02562 * 26 25 8
28 28 C 1.36675 * 119.60316 * 180.02562 * 3 2 1
29 29 H 1.09008 * 109.47047 * 300.00557 * 1 2 3
30 30 H 1.09001 * 109.46854 * 59.99934 * 1 2 3
31 31 H 1.09001 * 109.47786 * 180.02562 * 1 2 3
32 32 H 1.08001 * 119.48948 * 359.97438 * 4 3 2
33 33 H 1.08003 * 120.09625 * 179.97438 * 5 4 3
34 34 H 0.97001 * 120.00127 * 179.97438 * 15 14 12
35 35 H 1.08996 * 109.47671 * 204.46855 * 20 11 9
36 36 H 1.09000 * 109.46822 * 324.47529 * 20 11 9
37 37 H 1.09000 * 109.47427 * 300.00780 * 21 20 11
38 38 H 1.09009 * 109.46733 * 60.00104 * 21 20 11
39 39 H 0.96700 * 117.00246 * 180.02562 * 24 22 21
40 40 H 1.07998 * 120.09673 * 180.24788 * 25 8 7
41 41 H 1.08001 * 120.87095 * 179.97438 * 26 25 8
42 42 H 1.07998 * 120.18526 * 359.97438 * 28 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0456 1.2102 0.0000
4 6 1.2755 2.3788 -0.0005
5 6 1.8625 3.6041 -0.0011
6 6 3.2677 3.7076 -0.0005
7 7 3.8663 4.8980 -0.0016
8 6 5.1820 5.0042 -0.0006
9 6 5.7989 6.3494 -0.0012
10 8 7.0043 6.4653 0.1066
11 7 5.0245 7.4458 -0.1212
12 6 3.6632 7.3221 -0.1436
13 1 3.1980 6.5904 -0.7877
14 6 2.8768 8.1388 0.6632
15 7 3.4375 9.0717 1.3974
16 14 1.0235 7.9077 0.7018
17 1 0.6681 6.9353 1.7663
18 1 0.3680 9.2103 0.9822
19 1 0.5613 7.3938 -0.6126
20 6 5.6414 8.7703 -0.2274
21 6 6.0179 9.0422 -1.6852
22 6 6.6530 10.4043 -1.7945
23 8 6.7909 11.0875 -0.8075
24 8 7.0656 10.8587 -2.9883
25 6 6.0097 3.8698 0.0006
26 6 5.4532 2.6245 0.0012
27 6 4.0482 2.5216 0.0002
28 6 3.4110 1.2724 -0.0005
29 1 -0.3633 0.5140 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3635 -1.0276 0.0005
32 1 0.1980 2.3053 -0.0014
33 1 1.2537 4.4962 -0.0019
34 1 2.8893 9.6413 1.9596
35 1 4.9359 9.5282 0.1130
36 1 6.5379 8.8043 0.3917
37 1 6.7235 8.2843 -2.0257
38 1 5.1214 9.0081 -2.3044
39 1 7.4673 11.7381 -3.0084
40 1 7.0837 3.9830 0.0054
41 1 6.0734 1.7403 0.0017
42 1 3.9959 0.3645 -0.0005
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001599634745.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:05
Heat of formation + Delta-G solvation = -106.243879 kcal
Electronic energy + Delta-G solvation = -29656.061604 eV
Core-core repulsion = 25373.678944 eV
Total energy + Delta-G solvation = -4282.382660 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.125 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-41.99449 -41.30518 -40.63504 -39.68960 -37.27054 -36.88008 -36.68674 -34.49091
-33.80279 -32.41615 -31.35945 -30.73532 -28.02781 -27.04838 -26.47669 -25.06353
-23.99549 -23.12598 -22.19215 -21.26901 -19.95207 -19.24829 -18.97738 -18.76423
-17.75829 -17.56111 -17.22633 -16.95862 -16.67078 -16.62148 -16.21823 -15.94307
-15.86046 -15.35693 -15.24410 -14.86596 -14.59147 -14.30847 -14.13624 -14.12432
-13.94133 -13.61672 -13.37858 -13.07749 -12.93800 -12.87103 -12.77952 -12.57132
-12.53277 -12.10356 -11.97133 -11.89317 -11.64254 -11.63958 -11.36966 -11.00216
-10.88640 -10.03697 -9.66617 -9.30345 -8.83635 -8.18630 -6.01837 -0.62930
-0.26646 1.04727 1.20584 1.42335 1.45392 1.57917 1.59512 2.01524
2.32054 2.33650 2.46009 2.83288 3.13105 3.24787 3.42791 3.66064
3.82832 3.89571 3.99956 4.08045 4.13393 4.21693 4.23444 4.42450
4.45908 4.50393 4.55639 4.71707 4.74426 4.82105 4.87116 4.98292
5.03935 5.10226 5.22734 5.28230 5.42362 5.50430 5.59550 5.68205
5.80842 6.04451 6.36580 6.57173 6.95789 7.02191 7.20462 7.50191
7.92273 8.81379
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.013746 B = 0.003406 C = 0.002908
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2036.423203 B = 8217.708298 C = 9624.857510
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.324 6.324
3 C 0.131 3.869
4 C -0.168 4.168
5 C -0.060 4.060
6 C 0.059 3.941
7 N -0.411 5.411
8 C 0.096 3.904
9 C 0.500 3.500
10 O -0.623 6.623
11 N -0.423 5.423
12 C -0.301 4.301
13 H 0.119 0.881
14 C -0.004 4.004
15 N -0.908 5.908
16 Si 0.977 3.023
17 H -0.275 1.275
18 H -0.288 1.288
19 H -0.247 1.247
20 C 0.125 3.875
21 C -0.116 4.116
22 C 0.497 3.503
23 O -0.548 6.548
24 O -0.507 6.507
25 C -0.128 4.128
26 C -0.067 4.067
27 C -0.065 4.065
28 C -0.150 4.150
29 H 0.065 0.935
30 H 0.067 0.933
31 H 0.122 0.878
32 H 0.166 0.834
33 H 0.135 0.865
34 H 0.268 0.732
35 H 0.107 0.893
36 H 0.034 0.966
37 H 0.101 0.899
38 H 0.117 0.883
39 H 0.427 0.573
40 H 0.146 0.854
41 H 0.182 0.818
42 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.376 -14.641 -6.868 17.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 O -0.238 6.238
3 C 0.086 3.914
4 C -0.188 4.188
5 C -0.079 4.079
6 C -0.065 4.065
7 N -0.122 5.122
8 C -0.056 4.056
9 C 0.289 3.711
10 O -0.510 6.510
11 N -0.139 5.139
12 C -0.431 4.431
13 H 0.136 0.864
14 C -0.205 4.205
15 N -0.547 5.547
16 Si 0.800 3.200
17 H -0.201 1.201
18 H -0.214 1.214
19 H -0.170 1.170
20 C 0.001 3.999
21 C -0.155 4.155
22 C 0.340 3.660
23 O -0.438 6.438
24 O -0.320 6.320
25 C -0.149 4.149
26 C -0.093 4.093
27 C -0.067 4.067
28 C -0.169 4.169
29 H 0.083 0.917
30 H 0.086 0.914
31 H 0.141 0.859
32 H 0.183 0.817
33 H 0.153 0.847
34 H 0.078 0.922
35 H 0.125 0.875
36 H 0.052 0.948
37 H 0.119 0.881
38 H 0.135 0.865
39 H 0.289 0.711
40 H 0.164 0.836
41 H 0.199 0.801
42 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -6.524 -14.060 -6.433 16.781
hybrid contribution 0.005 0.702 0.527 0.878
sum -6.519 -13.357 -5.906 15.993
Atomic orbital electron populations
1.23429 0.76275 1.05903 1.02499 1.86068 1.23600 1.25809 1.88324
1.18792 0.92278 0.84691 0.95674 1.21324 1.02001 0.90842 1.04583
1.20858 0.91805 0.98749 0.96443 1.19631 0.95473 0.88753 1.02627
1.68930 1.10567 1.24699 1.07995 1.21243 0.89946 0.94102 1.00330
1.18726 0.86010 0.85254 0.81064 1.90586 1.15381 1.87191 1.57867
1.43541 1.06940 1.03781 1.59624 1.20178 0.79583 1.20248 1.23044
0.86414 1.26399 1.04511 0.95210 0.94400 1.69820 1.37741 1.19828
1.27299 0.85168 0.77723 0.77343 0.79721 1.20079 1.21423 1.17038
1.21214 0.98056 0.87925 0.92678 1.21606 1.02365 0.91033 1.00499
1.23273 0.73968 0.88467 0.80266 1.90708 1.54212 1.59363 1.39562
1.84500 1.73022 1.41170 1.33353 1.21816 1.01869 0.92044 0.99167
1.21636 0.93063 0.98078 0.96478 1.18857 0.94777 0.93599 0.99472
1.20217 0.92250 0.96988 1.07476 0.91655 0.91410 0.85935 0.81652
0.84724 0.92234 0.87536 0.94762 0.88109 0.86500 0.71132 0.83580
0.80055 0.82311
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.14 9.80 113.37 1.11 1.25 16
2 O -0.32 -6.11 10.47 -91.61 -0.96 -7.07 16
3 C 0.13 2.98 6.64 22.32 0.15 3.12 16
4 C -0.17 -3.81 8.93 22.13 0.20 -3.61 16
5 C -0.06 -1.81 9.98 22.37 0.22 -1.59 16
6 C 0.06 2.12 6.61 40.51 0.27 2.39 16
7 N -0.41 -17.81 6.28 -177.75 -1.12 -18.93 16
8 C 0.10 4.29 6.67 42.24 0.28 4.57 16
9 C 0.50 25.67 7.57 86.83 0.66 26.32 16
10 O -0.62 -33.69 15.94 -3.94 -0.06 -33.76 16
11 N -0.42 -22.09 2.50 -638.71 -1.60 -23.69 16
12 C -0.30 -15.46 7.45 84.15 0.63 -14.83 16
13 H 0.12 5.88 5.97 -2.91 -0.02 5.86 16
14 C 0.00 -0.22 5.35 84.99 0.45 0.23 16
15 N -0.91 -50.55 10.99 21.70 0.24 -50.31 16
16 Si 0.98 40.46 29.56 68.60 2.03 42.49 16
17 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16
18 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16
19 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16
20 C 0.12 6.33 4.17 86.38 0.36 6.69 16
21 C -0.12 -4.69 6.10 29.85 0.18 -4.51 16
22 C 0.50 18.36 8.33 71.23 0.59 18.95 16
23 O -0.55 -24.12 16.74 21.98 0.37 -23.75 16
24 O -0.51 -13.63 13.42 -51.45 -0.69 -14.32 16
25 C -0.13 -4.59 9.54 22.37 0.21 -4.38 16
26 C -0.07 -1.88 9.88 22.49 0.22 -1.66 16
27 C -0.06 -1.94 5.75 -21.22 -0.12 -2.06 16
28 C -0.15 -3.59 9.68 22.39 0.22 -3.38 16
29 H 0.06 0.60 7.64 -2.38 -0.02 0.58 16
30 H 0.07 0.59 7.63 -2.39 -0.02 0.57 16
31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16
32 H 0.17 2.56 6.22 -2.91 -0.02 2.54 16
33 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16
34 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16
35 H 0.11 5.91 5.48 -2.39 -0.01 5.89 16
36 H 0.03 1.89 7.49 -2.39 -0.02 1.87 16
37 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16
38 H 0.12 4.38 8.14 -2.38 -0.02 4.36 16
39 H 0.43 7.07 9.10 -74.06 -0.67 6.40 16
40 H 0.15 5.00 7.61 -2.91 -0.02 4.97 16
41 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16
42 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16
Total: -1.00 -75.02 363.69 4.26 -70.76
By element:
Atomic # 1 Polarization: 30.63 SS G_CDS: 0.42 Total: 31.05 kcal
Atomic # 6 Polarization: 21.89 SS G_CDS: 5.63 Total: 27.52 kcal
Atomic # 7 Polarization: -90.46 SS G_CDS: -2.48 Total: -92.94 kcal
Atomic # 8 Polarization: -77.55 SS G_CDS: -1.34 Total: -78.89 kcal
Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal
Total: -75.02 4.26 -70.76 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001599634745.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.481 kcal
(2) G-P(sol) polarization free energy of solvation -75.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds