Wall clock time and date at job start Sat Apr 11 2020 07:05:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86803 * 120.00125 * 2 1
4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1
5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1
6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1
7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1
9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1
10 10 C 1.47022 * 125.64600 * 179.97438 * 9 7 2
11 11 C 1.54327 * 107.27230 * 181.02426 * 10 9 7
12 12 H 1.08996 * 110.72854 * 140.55589 * 11 10 9
13 13 N 1.46505 * 110.71733 * 263.83086 * 11 10 9
14 14 C 1.34780 * 119.99778 * 273.54375 * 13 11 10
15 15 O 1.21488 * 119.99674 * 359.97438 * 14 13 11
16 16 C 1.48339 * 119.99871 * 180.02562 * 14 13 11
17 17 C 1.41969 * 126.84590 * 179.70557 * 16 14 13
18 18 C 1.36666 * 103.81384 * 179.91225 * 17 16 14
19 19 C 1.47890 * 126.81642 * 180.09091 * 18 17 16
20 20 C 1.39957 * 120.92448 * 0.02562 * 19 18 17
21 21 C 1.37965 * 118.99391 * 179.73030 * 20 19 18
22 22 N 1.31922 * 120.90162 * 0.55463 * 21 20 19
23 23 C 1.31920 * 122.05677 * 359.71264 * 22 21 20
24 24 C 1.37964 * 120.90240 * 0.02562 * 23 22 21
25 25 O 1.34472 * 106.37068 * 0.34850 * 18 17 16
26 26 N 1.20878 * 111.73928 * 359.76531 * 25 18 17
27 27 C 1.55158 * 102.94191 * 22.18789 * 11 10 9
28 28 H 1.09000 * 111.00300 * 82.61330 * 27 11 10
29 29 O 1.42895 * 111.00724 * 206.42780 * 27 11 10
30 30 C 1.47423 * 125.65107 * 359.68587 * 9 7 2
31 31 H 0.97000 * 120.00284 * 359.97438 * 1 2 3
32 32 H 1.09004 * 109.88354 * 300.43134 * 10 9 7
33 33 H 1.08998 * 109.88585 * 61.60709 * 10 9 7
34 34 H 0.97001 * 120.00193 * 93.53906 * 13 11 10
35 35 H 1.07998 * 128.09559 * 0.02562 * 17 16 14
36 36 H 1.07995 * 120.50458 * 359.97438 * 20 19 18
37 37 H 1.08002 * 119.54777 * 180.24845 * 21 20 19
38 38 H 1.08000 * 119.55259 * 179.97438 * 23 22 21
39 39 H 1.08003 * 120.50252 * 180.02562 * 24 23 22
40 40 H 0.96707 * 114.00561 * 179.97438 * 29 27 11
41 41 H 1.08999 * 110.36884 * 274.75120 * 30 9 7
42 42 H 1.09006 * 110.36212 * 37.07105 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4477 2.6526 0.7000
6 1 3.5478 1.4402 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 3.0903 -1.2021 -0.0040
9 7 1.3256 -2.3880 0.0005
10 6 1.9318 -3.7274 0.0005
11 6 0.7785 -4.7525 -0.0258
12 1 1.0236 -5.5924 -0.6758
13 7 0.4667 -5.2168 1.3283
14 6 1.1466 -6.2527 1.8586
15 8 2.0175 -6.8016 1.2136
16 6 0.8306 -6.7233 3.2295
17 6 1.4468 -7.7972 3.9241
18 6 0.8049 -7.8166 5.1305
19 6 1.0558 -8.7461 6.2530
20 6 2.0350 -9.7415 6.1575
21 6 2.2396 -10.5835 7.2311
22 7 1.5203 -10.4665 8.3307
23 6 0.5841 -9.5461 8.4602
24 6 0.3165 -8.6588 7.4382
25 8 -0.1040 -6.8263 5.0921
26 7 -0.0769 -6.2342 4.0386
27 6 -0.4020 -3.9324 -0.6101
28 1 -0.3534 -3.8988 -1.6985
29 8 -1.6568 -4.4573 -0.1721
30 6 -0.1415 -2.5332 0.0066
31 1 -0.4850 0.8400 0.0004
32 1 2.5577 -3.8511 -0.8833
33 1 2.5287 -3.8642 0.9022
34 1 -0.2289 -4.7787 1.8432
35 1 2.2388 -8.4460 3.5803
36 1 2.6242 -9.8463 5.2585
37 1 2.9957 -11.3522 7.1685
38 1 0.0188 -9.4868 9.3786
39 1 -0.4512 -7.9076 7.5514
40 1 -2.4243 -3.9768 -0.5116
41 1 -0.5229 -2.4889 1.0267
42 1 -0.6019 -1.7575 -0.6055
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001083739787.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:01
Heat of formation + Delta-G solvation = 55.368835 kcal
Electronic energy + Delta-G solvation = -28847.847688 eV
Core-core repulsion = 24604.765832 eV
Total energy + Delta-G solvation = -4243.081856 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.132 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-45.32359 -40.48377 -39.76538 -37.86745 -35.15507 -34.75405 -34.20367 -33.75845
-31.80296 -31.66731 -30.73013 -28.61183 -27.25877 -25.35140 -24.80432 -24.38916
-23.56572 -22.64087 -20.65692 -20.48337 -19.83072 -18.89167 -18.07489 -17.25657
-17.10111 -16.70098 -16.66791 -16.29015 -16.03172 -15.69117 -14.94605 -14.73475
-14.53610 -14.37727 -14.19777 -13.98824 -13.88531 -13.60560 -13.10039 -12.86019
-12.49692 -12.37939 -12.22454 -11.83093 -11.42055 -11.37029 -11.21477 -11.03597
-10.90876 -10.68159 -10.37302 -10.20270 -10.04097 -10.00819 -9.86448 -9.68863
-9.27494 -9.26810 -8.88028 -8.72279 -6.97829 -5.77085 -3.19513 0.03636
0.63338 1.11124 1.73418 2.40716 2.98746 3.18513 3.34331 3.36272
3.39717 3.41602 3.73917 3.97875 3.98811 4.32683 4.38510 4.44286
4.52807 4.60052 4.65724 4.84419 5.00870 5.09154 5.18738 5.28798
5.32278 5.40761 5.46454 5.54651 5.60744 5.65360 5.78188 6.03727
6.12053 6.13934 6.31781 6.54951 6.82412 7.21884 7.46361 7.47151
7.53743 7.66086 7.79792 7.99170 8.17848 8.24783 9.09062 9.69461
10.31623 11.27131
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.017072 B = 0.002224 C = 0.002138
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1639.681356 B =12588.413778 C =13092.140480
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.924 5.924
2 C -0.011 4.011
3 Si 0.918 3.082
4 H -0.287 1.287
5 H -0.290 1.290
6 H -0.281 1.281
7 C -0.223 4.223
8 H 0.080 0.920
9 N -0.600 5.600
10 C 0.126 3.874
11 C 0.142 3.858
12 H 0.095 0.905
13 N -0.678 5.678
14 C 0.595 3.405
15 O -0.530 6.530
16 C -0.017 4.017
17 C -0.148 4.148
18 C -0.011 4.011
19 C 0.031 3.969
20 C -0.147 4.147
21 C 0.106 3.894
22 N -0.481 5.481
23 C 0.105 3.895
24 C -0.150 4.150
25 O 0.136 5.864
26 N -0.315 5.315
27 C 0.064 3.936
28 H 0.075 0.925
29 O -0.566 6.566
30 C 0.126 3.874
31 H 0.253 0.747
32 H 0.040 0.960
33 H 0.032 0.968
34 H 0.413 0.587
35 H 0.186 0.814
36 H 0.144 0.856
37 H 0.164 0.836
38 H 0.163 0.837
39 H 0.147 0.853
40 H 0.380 0.620
41 H 0.021 0.979
42 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.459 -19.252 11.468 22.456
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.573 5.573
2 C -0.206 4.206
3 Si 0.748 3.252
4 H -0.215 1.215
5 H -0.216 1.216
6 H -0.207 1.207
7 C -0.351 4.351
8 H 0.098 0.902
9 N -0.328 5.328
10 C -0.001 4.001
11 C 0.037 3.963
12 H 0.113 0.887
13 N -0.328 5.328
14 C 0.378 3.622
15 O -0.406 6.406
16 C -0.175 4.175
17 C -0.170 4.170
18 C -0.074 4.074
19 C 0.022 3.978
20 C -0.167 4.167
21 C -0.051 4.051
22 N -0.190 5.190
23 C -0.051 4.051
24 C -0.170 4.170
25 O 0.056 5.944
26 N -0.012 5.012
27 C 0.003 3.997
28 H 0.093 0.907
29 O -0.371 6.371
30 C 0.001 3.999
31 H 0.064 0.936
32 H 0.058 0.942
33 H 0.050 0.950
34 H 0.249 0.751
35 H 0.204 0.796
36 H 0.162 0.838
37 H 0.181 0.819
38 H 0.181 0.819
39 H 0.164 0.836
40 H 0.227 0.773
41 H 0.039 0.961
42 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -1.199 -19.348 11.772 22.680
hybrid contribution 0.198 1.624 -0.842 1.840
sum -1.001 -17.724 10.930 20.847
Atomic orbital electron populations
1.69729 1.04932 1.24980 1.57626 1.24800 0.95796 0.97859 1.02179
0.86017 0.78542 0.82984 0.77633 1.21462 1.21589 1.20678 1.19099
0.90613 0.82131 1.43212 0.90211 1.44339 1.01445 0.99838 1.87143
1.21755 0.93562 0.85441 0.99312 1.22144 0.95421 0.96622 0.82087
0.88673 1.45580 1.38193 1.31926 1.17082 1.16785 0.82064 0.80549
0.82794 1.90782 1.31897 1.57562 1.60342 1.23512 0.97496 0.98286
0.98196 1.22650 1.02916 0.99634 0.91836 1.22234 0.94708 0.94071
0.96355 1.17878 0.96340 0.92908 0.90724 1.22192 0.97938 0.95185
1.01393 1.22747 0.97095 0.97320 0.87892 1.67660 1.05559 1.20633
1.25164 1.22773 0.93913 0.90006 0.98439 1.22360 1.00487 1.01067
0.93125 1.84900 1.45748 1.34289 1.29416 1.74218 1.18298 1.15602
0.93059 1.23760 0.82273 0.95948 0.97705 0.90722 1.86340 1.15584
1.58911 1.76266 1.22635 0.85596 0.92521 0.99156 0.93596 0.94196
0.94991 0.75114 0.79645 0.83781 0.81858 0.81946 0.83555 0.77262
0.96077 0.86928
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.05 10.08 55.49 0.56 -25.49 16
2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16
3 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16
4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16
5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
7 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16
8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16
9 N -0.60 -15.02 3.39 -169.94 -0.58 -15.60 16
10 C 0.13 2.70 6.98 -3.06 -0.02 2.68 16
11 C 0.14 2.65 3.13 -66.09 -0.21 2.44 16
12 H 0.10 1.69 7.70 -51.93 -0.40 1.29 16
13 N -0.68 -12.16 4.78 -52.81 -0.25 -12.41 16
14 C 0.60 10.37 7.85 -12.10 -0.09 10.28 16
15 O -0.53 -10.14 16.68 5.38 0.09 -10.05 16
16 C -0.02 -0.24 7.18 -82.62 -0.59 -0.84 16
17 C -0.15 -1.70 10.39 -38.72 -0.40 -2.10 16
18 C -0.01 -0.11 7.18 -36.20 -0.26 -0.37 16
19 C 0.03 0.25 5.91 -104.66 -0.62 -0.36 16
20 C -0.15 -0.99 9.67 -39.04 -0.38 -1.37 16
21 C 0.11 0.70 11.17 -17.61 -0.20 0.51 16
22 N -0.48 -3.95 10.34 -13.35 -0.14 -4.09 16
23 C 0.11 0.71 11.17 -17.61 -0.20 0.52 16
24 C -0.15 -1.06 9.84 -39.04 -0.38 -1.44 16
25 O 0.14 1.65 11.11 16.02 0.18 1.82 16
26 N -0.31 -4.58 11.81 33.35 0.39 -4.18 16
27 C 0.06 1.16 4.23 -24.47 -0.10 1.06 16
28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
29 O -0.57 -9.12 12.63 -35.23 -0.44 -9.56 16
30 C 0.13 2.91 5.62 -2.42 -0.01 2.89 16
31 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16
32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16
33 H 0.03 0.72 8.04 -51.93 -0.42 0.31 16
34 H 0.41 7.48 7.95 -40.82 -0.32 7.16 16
35 H 0.19 1.68 7.55 -52.49 -0.40 1.29 16
36 H 0.14 0.69 7.29 -52.49 -0.38 0.30 16
37 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16
38 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16
39 H 0.15 0.81 8.04 -52.48 -0.42 0.39 16
40 H 0.38 4.65 9.12 45.56 0.42 5.07 16
41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
42 H 0.11 2.87 5.86 -51.93 -0.30 2.57 16
LS Contribution 366.00 15.07 5.52 5.52
Total: -1.00 -33.28 366.00 -7.31 -40.59
By element:
Atomic # 1 Polarization: 13.37 SS G_CDS: -3.89 Total: 9.48 kcal
Atomic # 6 Polarization: 10.96 SS G_CDS: -3.72 Total: 7.24 kcal
Atomic # 7 Polarization: -61.77 SS G_CDS: -0.01 Total: -61.78 kcal
Atomic # 8 Polarization: -17.61 SS G_CDS: -0.18 Total: -17.79 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -33.28 -7.31 -40.59 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001083739787.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.964 kcal
(2) G-P(sol) polarization free energy of solvation -33.285 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.679 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.369 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds