Wall clock time and date at job start Sat Apr 11 2020 07:05:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86803 * 120.00125 * 2 1
4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1
5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1
6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1
7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1
9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1
10 10 C 1.47022 * 125.64600 * 179.97438 * 9 7 2
11 11 C 1.54327 * 107.27230 * 181.02426 * 10 9 7
12 12 H 1.08996 * 110.72854 * 140.55589 * 11 10 9
13 13 N 1.46505 * 110.71733 * 263.83086 * 11 10 9
14 14 C 1.34780 * 119.99778 * 273.54375 * 13 11 10
15 15 O 1.21488 * 119.99674 * 359.97438 * 14 13 11
16 16 C 1.48339 * 119.99871 * 180.02562 * 14 13 11
17 17 C 1.41969 * 126.84590 * 179.70557 * 16 14 13
18 18 C 1.36666 * 103.81384 * 179.91225 * 17 16 14
19 19 C 1.47890 * 126.81642 * 180.09091 * 18 17 16
20 20 C 1.39957 * 120.92448 * 0.02562 * 19 18 17
21 21 C 1.37965 * 118.99391 * 179.73030 * 20 19 18
22 22 N 1.31922 * 120.90162 * 0.55463 * 21 20 19
23 23 C 1.31920 * 122.05677 * 359.71264 * 22 21 20
24 24 C 1.37964 * 120.90240 * 0.02562 * 23 22 21
25 25 O 1.34472 * 106.37068 * 0.34850 * 18 17 16
26 26 N 1.20878 * 111.73928 * 359.76531 * 25 18 17
27 27 C 1.55158 * 102.94191 * 22.18789 * 11 10 9
28 28 H 1.09000 * 111.00300 * 82.61330 * 27 11 10
29 29 O 1.42895 * 111.00724 * 206.42780 * 27 11 10
30 30 C 1.47423 * 125.65107 * 359.68587 * 9 7 2
31 31 H 0.97000 * 120.00284 * 359.97438 * 1 2 3
32 32 H 1.09004 * 109.88354 * 300.43134 * 10 9 7
33 33 H 1.08998 * 109.88585 * 61.60709 * 10 9 7
34 34 H 0.97001 * 120.00193 * 93.53906 * 13 11 10
35 35 H 1.07998 * 128.09559 * 0.02562 * 17 16 14
36 36 H 1.07995 * 120.50458 * 359.97438 * 20 19 18
37 37 H 1.08002 * 119.54777 * 180.24845 * 21 20 19
38 38 H 1.08000 * 119.55259 * 179.97438 * 23 22 21
39 39 H 1.08003 * 120.50252 * 180.02562 * 24 23 22
40 40 H 0.96707 * 114.00561 * 179.97438 * 29 27 11
41 41 H 1.08999 * 110.36884 * 274.75120 * 30 9 7
42 42 H 1.09006 * 110.36212 * 37.07105 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4477 2.6526 0.7000
6 1 3.5478 1.4402 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 3.0903 -1.2021 -0.0040
9 7 1.3256 -2.3880 0.0005
10 6 1.9318 -3.7274 0.0005
11 6 0.7785 -4.7525 -0.0258
12 1 1.0236 -5.5924 -0.6758
13 7 0.4667 -5.2168 1.3283
14 6 1.1466 -6.2527 1.8586
15 8 2.0175 -6.8016 1.2136
16 6 0.8306 -6.7233 3.2295
17 6 1.4468 -7.7972 3.9241
18 6 0.8049 -7.8166 5.1305
19 6 1.0558 -8.7461 6.2530
20 6 2.0350 -9.7415 6.1575
21 6 2.2396 -10.5835 7.2311
22 7 1.5203 -10.4665 8.3307
23 6 0.5841 -9.5461 8.4602
24 6 0.3165 -8.6588 7.4382
25 8 -0.1040 -6.8263 5.0921
26 7 -0.0769 -6.2342 4.0386
27 6 -0.4020 -3.9324 -0.6101
28 1 -0.3534 -3.8988 -1.6985
29 8 -1.6568 -4.4573 -0.1721
30 6 -0.1415 -2.5332 0.0066
31 1 -0.4850 0.8400 0.0004
32 1 2.5577 -3.8511 -0.8833
33 1 2.5287 -3.8642 0.9022
34 1 -0.2289 -4.7787 1.8432
35 1 2.2388 -8.4460 3.5803
36 1 2.6242 -9.8463 5.2585
37 1 2.9957 -11.3522 7.1685
38 1 0.0188 -9.4868 9.3786
39 1 -0.4512 -7.9076 7.5514
40 1 -2.4243 -3.9768 -0.5116
41 1 -0.5229 -2.4889 1.0267
42 1 -0.6019 -1.7575 -0.6055
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001083739787.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:00
Heat of formation + Delta-G solvation = 30.251309 kcal
Electronic energy + Delta-G solvation = -28848.936865 eV
Core-core repulsion = 24604.765832 eV
Total energy + Delta-G solvation = -4244.171033 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.132 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-46.33548 -41.21715 -41.00806 -39.41214 -36.70849 -35.61341 -35.54867 -34.93818
-33.54498 -32.25079 -31.56143 -30.36044 -28.96364 -26.81024 -25.92096 -25.45781
-24.35722 -23.51555 -22.37275 -21.81442 -21.28920 -19.79625 -19.09882 -19.02118
-18.48826 -18.01965 -17.40636 -17.21249 -16.92992 -16.72299 -16.63410 -16.17549
-15.79761 -15.55598 -15.09036 -14.93060 -14.81009 -14.67253 -14.57022 -14.31589
-14.18484 -13.95438 -13.24181 -12.99735 -12.93289 -12.82342 -12.76047 -12.56229
-12.10112 -12.09527 -12.01074 -11.79856 -11.74433 -11.46051 -10.89301 -10.80685
-10.56725 -10.30097 -10.16936 -10.02881 -8.99040 -7.84335 -5.29859 -0.66969
0.02196 0.15017 0.97356 1.45236 1.46366 1.54498 1.55166 1.74234
1.90571 2.43411 2.67108 2.83909 2.99730 3.15522 3.26897 3.56467
3.58319 3.61382 3.71770 3.82697 3.93547 3.94216 3.95623 4.07436
4.18537 4.25600 4.44796 4.55260 4.57534 4.66715 4.75033 4.81832
4.87336 4.90580 5.11950 5.28497 5.35767 5.42457 5.64681 5.67115
6.18177 6.20908 6.71406 6.80905 6.88571 6.96402 7.03387 7.67267
8.29341 9.17082
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.017072 B = 0.002224 C = 0.002138
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1639.681356 B =12588.413778 C =13092.140480
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.945 5.945
2 C -0.062 4.062
3 Si 0.982 3.018
4 H -0.281 1.281
5 H -0.293 1.293
6 H -0.275 1.275
7 C -0.242 4.242
8 H 0.079 0.921
9 N -0.618 5.618
10 C 0.126 3.874
11 C 0.149 3.851
12 H 0.111 0.889
13 N -0.681 5.681
14 C 0.596 3.404
15 O -0.550 6.550
16 C -0.041 4.041
17 C -0.150 4.150
18 C 0.009 3.991
19 C 0.010 3.990
20 C -0.141 4.141
21 C 0.101 3.899
22 N -0.502 5.502
23 C 0.100 3.900
24 C -0.150 4.150
25 O 0.145 5.855
26 N -0.337 5.337
27 C 0.087 3.913
28 H 0.093 0.907
29 O -0.564 6.564
30 C 0.134 3.866
31 H 0.250 0.750
32 H 0.049 0.951
33 H 0.016 0.984
34 H 0.411 0.589
35 H 0.209 0.791
36 H 0.164 0.836
37 H 0.190 0.810
38 H 0.186 0.814
39 H 0.159 0.841
40 H 0.399 0.601
41 H -0.007 1.007
42 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.071 -20.781 12.170 24.106
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.255 4.255
3 Si 0.810 3.190
4 H -0.208 1.208
5 H -0.219 1.219
6 H -0.200 1.200
7 C -0.371 4.371
8 H 0.097 0.903
9 N -0.346 5.346
10 C 0.000 4.000
11 C 0.044 3.956
12 H 0.129 0.871
13 N -0.331 5.331
14 C 0.380 3.620
15 O -0.427 6.427
16 C -0.198 4.198
17 C -0.173 4.173
18 C -0.054 4.054
19 C 0.001 3.999
20 C -0.162 4.162
21 C -0.055 4.055
22 N -0.212 5.212
23 C -0.056 4.056
24 C -0.170 4.170
25 O 0.063 5.937
26 N -0.033 5.033
27 C 0.026 3.974
28 H 0.110 0.890
29 O -0.371 6.371
30 C 0.008 3.992
31 H 0.059 0.941
32 H 0.067 0.933
33 H 0.034 0.966
34 H 0.246 0.754
35 H 0.226 0.774
36 H 0.182 0.818
37 H 0.206 0.794
38 H 0.203 0.797
39 H 0.176 0.824
40 H 0.249 0.751
41 H 0.011 0.989
42 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -0.824 -20.891 12.459 24.338
hybrid contribution 0.065 2.014 -0.920 2.215
sum -0.759 -18.877 11.539 22.137
Atomic orbital electron populations
1.69956 1.06004 1.25279 1.58181 1.25602 0.96736 1.00846 1.02271
0.85035 0.77427 0.78909 0.77666 1.20796 1.21907 1.19997 1.19410
0.90997 0.83458 1.43189 0.90285 1.44578 1.02455 1.00539 1.87029
1.21831 0.94600 0.84783 0.98789 1.22025 0.94414 0.96235 0.82938
0.87144 1.45590 1.38346 1.32256 1.16902 1.17065 0.81365 0.79916
0.83619 1.90754 1.32614 1.58115 1.61241 1.23332 0.99031 0.99979
0.97448 1.22882 1.03529 0.99159 0.91712 1.22546 0.93204 0.93115
0.96550 1.18001 0.97881 0.93478 0.90580 1.22446 0.97285 0.94255
1.02177 1.23202 0.97264 0.97708 0.87323 1.67704 1.06188 1.21258
1.26032 1.23166 0.93759 0.89451 0.99209 1.22554 1.00438 1.01286
0.92762 1.84861 1.45940 1.34472 1.28430 1.74210 1.18842 1.16497
0.93737 1.23389 0.83232 0.92646 0.98103 0.88952 1.86321 1.15517
1.58773 1.76507 1.22422 0.84497 0.94865 0.97385 0.94055 0.93344
0.96557 0.75358 0.77448 0.81824 0.79350 0.79664 0.82371 0.75083
0.98867 0.89487
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -54.33 10.08 21.65 0.22 -54.11 16
2 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16
3 Si 0.98 45.07 29.55 68.60 2.03 47.10 16
4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
7 C -0.24 -13.46 10.27 84.04 0.86 -12.60 16
8 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16
9 N -0.62 -31.51 3.39 -691.57 -2.35 -33.86 16
10 C 0.13 5.45 6.98 86.73 0.61 6.06 16
11 C 0.15 5.48 3.13 46.18 0.14 5.62 16
12 H 0.11 3.78 7.70 -2.39 -0.02 3.76 16
13 N -0.68 -24.48 4.78 -439.30 -2.10 -26.58 16
14 C 0.60 20.70 7.85 86.93 0.68 21.38 16
15 O -0.55 -20.80 16.68 -3.68 -0.06 -20.86 16
16 C -0.04 -1.21 7.18 42.88 0.31 -0.90 16
17 C -0.15 -3.26 10.39 22.83 0.24 -3.02 16
18 C 0.01 0.17 7.18 24.46 0.18 0.34 16
19 C 0.01 0.14 5.91 -19.89 -0.12 0.03 16
20 C -0.14 -1.57 9.67 22.62 0.22 -1.35 16
21 C 0.10 1.10 11.17 84.61 0.95 2.05 16
22 N -0.50 -7.23 10.34 -196.15 -2.03 -9.26 16
23 C 0.10 1.16 11.17 84.61 0.95 2.10 16
24 C -0.15 -1.85 9.84 22.62 0.22 -1.62 16
25 O 0.14 3.39 11.11 67.52 0.75 4.14 16
26 N -0.34 -9.76 11.81 -49.01 -0.58 -10.34 16
27 C 0.09 3.12 4.23 32.06 0.14 3.25 16
28 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16
29 O -0.56 -17.45 12.63 -148.98 -1.88 -19.33 16
30 C 0.13 6.28 5.62 86.93 0.49 6.77 16
31 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16
32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
33 H 0.02 0.76 8.04 -2.39 -0.02 0.74 16
34 H 0.41 15.09 7.95 -92.71 -0.74 14.36 16
35 H 0.21 3.35 7.55 -2.91 -0.02 3.33 16
36 H 0.16 1.08 7.29 -2.91 -0.02 1.06 16
37 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16
38 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16
39 H 0.16 1.47 8.04 -2.91 -0.02 1.44 16
40 H 0.40 9.15 9.12 -74.05 -0.68 8.47 16
41 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16
42 H 0.09 4.56 5.86 -2.38 -0.01 4.54 16
Total: -1.00 -72.38 366.00 0.01 -72.37
By element:
Atomic # 1 Polarization: 25.90 SS G_CDS: -0.31 Total: 25.59 kcal
Atomic # 6 Polarization: 18.82 SS G_CDS: 6.32 Total: 25.14 kcal
Atomic # 7 Polarization: -127.31 SS G_CDS: -6.83 Total: -134.14 kcal
Atomic # 8 Polarization: -34.86 SS G_CDS: -1.19 Total: -36.06 kcal
Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal
Total: -72.38 0.01 -72.37 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001083739787.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.624 kcal
(2) G-P(sol) polarization free energy of solvation -72.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.241 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds