Wall clock time and date at job start Sat Apr 11 2020 07:06:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31633 * 1
3 3 Si 1.86800 * 120.00036 * 2 1
4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1
5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1
6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1
7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3
8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1
9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1
10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2
11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7
12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9
13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9
14 14 C 1.47019 * 125.64724 * 0.02562 * 13 11 10
15 15 C 1.54323 * 107.27046 * 178.90656 * 14 13 11
16 16 C 1.55152 * 102.94507 * 337.80871 * 15 14 13
17 17 H 1.09003 * 111.00681 * 277.43236 * 16 15 14
18 18 C 1.52997 * 111.00506 * 153.57338 * 16 15 14
19 19 N 1.46904 * 109.47066 * 175.00188 * 18 16 15
20 20 C 1.46898 * 111.00289 * 180.02562 * 19 18 16
21 21 C 1.50698 * 109.47330 * 180.02562 * 20 19 18
22 22 O 1.21238 * 119.99827 * 359.97438 * 21 20 19
23 23 N 1.34773 * 119.99914 * 180.02562 * 21 20 19
24 24 C 1.34781 * 120.00190 * 179.97438 * 23 21 20
25 25 N 1.34771 * 120.00191 * 179.97438 * 24 23 21
26 26 O 1.21538 * 119.99465 * 359.97438 * 24 23 21
27 27 C 1.47419 * 125.64747 * 179.71629 * 13 11 10
28 28 H 0.97001 * 119.99662 * 179.97438 * 1 2 3
29 29 H 1.09005 * 109.47183 * 299.99528 * 10 9 7
30 30 H 1.08991 * 109.47038 * 60.00359 * 10 9 7
31 31 H 1.08999 * 109.88880 * 298.32450 * 14 13 11
32 32 H 1.09008 * 109.88386 * 59.33842 * 14 13 11
33 33 H 1.09001 * 110.71918 * 96.17125 * 15 14 13
34 34 H 1.08999 * 110.72134 * 219.44434 * 15 14 13
35 35 H 1.08998 * 109.47217 * 295.00055 * 18 16 15
36 36 H 1.08996 * 109.47008 * 55.00709 * 18 16 15
37 37 H 1.00900 * 110.99850 * 303.95956 * 19 18 16
38 38 H 1.09003 * 109.46814 * 300.00284 * 20 19 18
39 39 H 1.09000 * 109.46975 * 59.99860 * 20 19 18
40 40 H 0.97002 * 120.00326 * 359.97438 * 23 21 20
41 41 H 0.97002 * 120.00324 * 0.02562 * 25 24 23
42 42 H 0.97003 * 120.00143 * 179.97438 * 25 24 23
43 43 H 1.08999 * 110.36921 * 322.99701 * 27 13 11
44 44 H 1.08996 * 110.36854 * 85.32123 * 27 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 1.2853 2.7465 0.0006
5 1 3.1041 1.6964 1.2126
6 1 3.1041 1.6965 -1.2124
7 6 2.0104 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0001
9 16 1.1294 -2.7279 -0.0019
10 6 2.5160 -3.8913 -0.0013
11 6 1.9875 -5.3027 -0.0030
12 8 0.7911 -5.5022 -0.0040
13 7 2.8442 -6.3431 -0.0024
14 6 4.3111 -6.2450 0.0004
15 6 4.8665 -7.6846 0.0282
16 6 3.6835 -8.5023 0.6105
17 1 3.6666 -8.4441 1.6989
18 6 3.7396 -9.9577 0.1421
19 7 2.6783 -10.7269 0.8054
20 6 2.7019 -12.1325 0.3793
21 6 1.6013 -12.8880 1.0785
22 8 0.8698 -12.3125 1.8553
23 7 1.4308 -14.2036 0.8409
24 6 0.4468 -14.8795 1.4666
25 7 0.2760 -16.1950 1.2287
26 8 -0.2865 -14.3025 2.2454
27 6 2.4656 -7.7678 0.0021
28 1 -0.4850 -0.8401 -0.0004
29 1 3.1252 -3.7309 -0.8909
30 1 3.1238 -3.7317 0.8891
31 1 4.6503 -5.7342 -0.9008
32 1 4.6446 -5.6995 0.8832
33 1 5.1107 -8.0233 -0.9787
34 1 5.7378 -7.7493 0.6799
35 1 3.5966 -9.9976 -0.9377
36 1 4.7101 -10.3840 0.3961
37 1 2.7510 -10.6523 1.8090
38 1 2.5520 -12.1879 -0.6990
39 1 3.6653 -12.5736 0.6352
40 1 2.0163 -14.6642 0.2196
41 1 0.8615 -16.6556 0.6074
42 1 -0.4320 -16.6815 1.6793
43 1 1.5810 -7.9234 0.6195
44 1 2.2853 -8.1156 -1.0151
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001491786277.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:40
Heat of formation + Delta-G solvation = -136.988316 kcal
Electronic energy + Delta-G solvation = -26449.710684 eV
Core-core repulsion = 22333.731548 eV
Total energy + Delta-G solvation = -4115.979136 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 344.135 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.14278 -41.12630 -39.55689 -38.81838 -36.55586 -35.82819 -34.75746 -34.33506
-33.35096 -30.98329 -30.42872 -28.27088 -27.10208 -25.58986 -23.94253 -23.13151
-21.68974 -21.39096 -20.87172 -20.08843 -19.73959 -18.68106 -18.16878 -17.60673
-17.42188 -17.05514 -16.95725 -16.55108 -16.26444 -15.86614 -15.74301 -15.62338
-15.35508 -15.16106 -14.86845 -14.61538 -14.41834 -14.27114 -14.03139 -13.86872
-13.55951 -13.43729 -13.04667 -12.73379 -12.66412 -12.22068 -12.10624 -11.94808
-11.93365 -11.57948 -11.56571 -11.29065 -11.10176 -11.08493 -10.84005 -10.75813
-10.34354 -9.74045 -9.34901 -8.93978 -8.90837 -6.29998 1.02795 1.13972
1.45479 1.46889 1.51352 1.61068 1.81256 2.02687 2.22921 2.33948
3.00417 3.01606 3.10263 3.31021 3.53903 3.62612 3.74853 3.81963
3.92881 4.08294 4.28051 4.29635 4.33392 4.40614 4.45148 4.52598
4.67827 4.76456 4.80919 4.91797 5.00305 5.03041 5.10639 5.29182
5.41385 5.46294 5.62289 5.83343 5.99936 6.12482 6.29090 6.34298
6.56489 7.02129 7.05800 7.13846 7.42973 8.49228
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.024243 B = 0.001619 C = 0.001533
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1154.678178 B =17290.485340 C =18255.845079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C -0.019 4.019
3 Si 1.139 2.861
4 H -0.280 1.280
5 H -0.262 1.262
6 H -0.261 1.261
7 C -0.613 4.613
8 H 0.077 0.923
9 S -0.201 6.201
10 C -0.097 4.097
11 C 0.539 3.461
12 O -0.573 6.573
13 N -0.618 5.618
14 C 0.085 3.915
15 C -0.106 4.106
16 C -0.090 4.090
17 H 0.080 0.920
18 C 0.083 3.917
19 N -0.709 5.709
20 C 0.056 3.944
21 C 0.507 3.493
22 O -0.519 6.519
23 N -0.671 5.671
24 C 0.687 3.313
25 N -0.829 5.829
26 O -0.606 6.606
27 C 0.116 3.884
28 H 0.259 0.741
29 H 0.110 0.890
30 H 0.107 0.893
31 H 0.080 0.920
32 H 0.073 0.927
33 H 0.102 0.898
34 H 0.112 0.888
35 H 0.091 0.909
36 H 0.075 0.925
37 H 0.346 0.654
38 H 0.136 0.864
39 H 0.110 0.890
40 H 0.437 0.563
41 H 0.422 0.578
42 H 0.424 0.576
43 H 0.044 0.956
44 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.638 -37.505 -3.968 42.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.222 4.222
3 Si 0.956 3.044
4 H -0.205 1.205
5 H -0.187 1.187
6 H -0.186 1.186
7 C -0.761 4.761
8 H 0.095 0.905
9 S 0.026 5.974
10 C -0.248 4.248
11 C 0.327 3.673
12 O -0.452 6.452
13 N -0.353 5.353
14 C -0.037 4.037
15 C -0.144 4.144
16 C -0.109 4.109
17 H 0.098 0.902
18 C -0.046 4.046
19 N -0.342 5.342
20 C -0.076 4.076
21 C 0.295 3.705
22 O -0.389 6.389
23 N -0.341 5.341
24 C 0.386 3.614
25 N -0.401 5.401
26 O -0.483 6.483
27 C -0.006 4.006
28 H 0.070 0.930
29 H 0.128 0.872
30 H 0.125 0.875
31 H 0.098 0.902
32 H 0.092 0.908
33 H 0.120 0.880
34 H 0.131 0.869
35 H 0.109 0.891
36 H 0.093 0.907
37 H 0.165 0.835
38 H 0.154 0.846
39 H 0.128 0.872
40 H 0.277 0.723
41 H 0.255 0.745
42 H 0.258 0.742
43 H 0.063 0.937
44 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 17.212 -35.001 -3.363 39.149
hybrid contribution 1.517 -2.184 0.303 2.676
sum 18.729 -37.185 -3.060 41.747
Atomic orbital electron populations
1.70918 1.08076 1.29929 1.45854 1.27924 0.96291 1.06470 0.91555
0.82703 0.73918 0.69252 0.78532 1.20521 1.18718 1.18551 1.24022
0.96518 0.92545 1.62976 0.90524 1.85146 1.13401 1.01403 1.97470
1.23136 1.01869 0.93204 1.06597 1.19805 0.85560 0.86189 0.75731
1.90695 1.17344 1.85849 1.51339 1.48528 1.08181 1.05907 1.72640
1.22447 0.77554 1.00768 1.02944 1.22674 0.97384 0.90334 1.04021
1.22303 0.93232 0.94873 1.00518 0.90170 1.21911 0.92882 0.89868
0.99892 1.60066 1.51117 1.09703 1.13328 1.21928 0.95467 0.88088
1.02107 1.21810 0.86059 0.81114 0.81528 1.90882 1.45541 1.67937
1.34583 1.43881 1.33511 1.10926 1.45815 1.16557 0.80953 0.83329
0.80602 1.42867 1.39783 1.06708 1.50729 1.91118 1.48111 1.69344
1.39684 1.22270 0.98873 0.78592 1.00890 0.93000 0.87189 0.87457
0.90198 0.90820 0.87991 0.86926 0.89083 0.90725 0.83496 0.84618
0.87208 0.72252 0.74534 0.74198 0.93749 0.91191
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -59.68 13.67 21.65 0.30 -59.38 16
2 C -0.02 -1.16 5.49 84.86 0.47 -0.69 16
3 Si 1.14 50.15 29.92 68.60 2.05 52.20 16
4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
5 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16
6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16
7 C -0.61 -36.48 9.50 67.95 0.65 -35.83 16
8 H 0.08 4.24 7.80 -2.92 -0.02 4.22 16
9 S -0.20 -11.71 19.60 -56.49 -1.11 -12.82 16
10 C -0.10 -4.18 5.35 71.24 0.38 -3.79 16
11 C 0.54 22.63 7.87 87.66 0.69 23.32 16
12 O -0.57 -30.00 16.12 -3.04 -0.05 -30.05 16
13 N -0.62 -18.38 3.33 -812.24 -2.70 -21.08 16
14 C 0.08 1.56 6.49 86.73 0.56 2.12 16
15 C -0.11 -0.97 6.42 31.78 0.20 -0.77 16
16 C -0.09 -1.21 3.18 -9.48 -0.03 -1.24 16
17 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
18 C 0.08 0.60 5.14 86.30 0.44 1.05 16
19 N -0.71 -9.10 6.07 -517.94 -3.14 -12.24 16
20 C 0.06 0.31 6.17 85.56 0.53 0.84 16
21 C 0.51 7.91 7.81 87.66 0.68 8.60 16
22 O -0.52 -16.03 14.60 19.86 0.29 -15.74 16
23 N -0.67 -5.34 5.24 -440.53 -2.31 -7.64 16
24 C 0.69 10.67 8.78 179.05 1.57 12.25 16
25 N -0.83 -2.81 8.88 -184.79 -1.64 -4.45 16
26 O -0.61 -18.87 15.58 18.93 0.29 -18.58 16
27 C 0.12 2.93 6.32 86.78 0.55 3.48 16
28 H 0.26 17.74 7.12 -92.71 -0.66 17.07 16
29 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16
30 H 0.11 4.24 8.14 -2.40 -0.02 4.22 16
31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16
33 H 0.10 0.55 8.04 -2.39 -0.02 0.53 16
34 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16
35 H 0.09 0.52 7.96 -2.39 -0.02 0.50 16
36 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16
37 H 0.35 5.38 8.43 -89.69 -0.76 4.62 16
38 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16
39 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16
40 H 0.44 -2.00 8.71 -92.71 -0.81 -2.81 16
41 H 0.42 -2.51 8.84 -92.71 -0.82 -3.33 16
42 H 0.42 1.30 8.93 -92.71 -0.83 0.48 16
43 H 0.04 1.47 8.04 -2.39 -0.02 1.45 16
44 H 0.07 1.69 7.90 -2.39 -0.02 1.67 16
Total: -1.00 -111.22 387.89 -3.35 -114.57
By element:
Atomic # 1 Polarization: 7.92 SS G_CDS: -2.03 Total: 5.90 kcal
Atomic # 6 Polarization: 2.62 SS G_CDS: 6.69 Total: 9.31 kcal
Atomic # 7 Polarization: -95.30 SS G_CDS: -9.50 Total: -104.80 kcal
Atomic # 8 Polarization: -64.90 SS G_CDS: 0.54 Total: -64.36 kcal
Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal
Atomic # 16 Polarization: -11.71 SS G_CDS: -1.11 Total: -12.82 kcal
Total: -111.22 -3.35 -114.57 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001491786277.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.416 kcal
(2) G-P(sol) polarization free energy of solvation -111.222 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.638 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.350 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.572 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.988 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds