Wall clock time and date at job start Sat Apr 11 2020 07:05:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50693 * 109.47083 * 2 1
4 4 C 1.38144 * 120.03410 * 264.99613 * 3 2 1
5 5 C 1.38261 * 120.06731 * 179.97438 * 4 3 2
6 6 C 1.38301 * 120.13155 * 359.97438 * 5 4 3
7 7 C 1.38107 * 120.06491 * 0.02562 * 6 5 4
8 8 C 1.38813 * 120.03597 * 84.72476 * 3 2 1
9 9 N 1.40228 * 120.06210 * 0.02562 * 8 3 2
10 10 C 1.35096 * 126.61007 * 179.71519 * 9 8 3
11 11 C 1.36685 * 106.78106 * 179.85556 * 10 9 8
12 12 C 1.47421 * 125.77777 * 180.16174 * 11 10 9
13 13 O 1.21627 * 119.99713 * 355.02251 * 12 11 10
14 14 N 1.34769 * 120.00388 * 175.02541 * 12 11 10
15 15 C 1.36953 * 120.00288 * 183.71228 * 14 12 11
16 16 H 1.08000 * 119.99960 * 22.55528 * 15 14 12
17 17 C 1.38991 * 120.00382 * 202.55605 * 15 14 12
18 18 N 1.31401 * 119.99834 * 24.25268 * 17 15 14
19 19 Si 1.86804 * 120.00207 * 204.25472 * 17 15 14
20 20 H 1.48490 * 109.47001 * 359.97438 * 19 17 15
21 21 H 1.48503 * 109.46786 * 120.00119 * 19 17 15
22 22 H 1.48504 * 109.46940 * 239.99767 * 19 17 15
23 23 C 1.46502 * 120.00436 * 3.71104 * 14 12 11
24 24 C 1.50695 * 109.46953 * 85.47419 * 23 14 12
25 25 O 1.20822 * 120.00390 * 0.02562 * 24 23 14
26 26 O 1.34231 * 120.00112 * 180.02562 * 24 23 14
27 27 N 1.34447 * 108.45113 * 0.41309 * 11 10 9
28 28 N 1.28747 * 109.58237 * 359.74332 * 27 11 10
29 29 H 1.08993 * 109.47242 * 300.00119 * 1 2 3
30 30 H 1.09007 * 109.47047 * 59.99899 * 1 2 3
31 31 H 1.08998 * 109.47102 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.46917 * 120.00325 * 2 1 3
33 33 H 1.08998 * 109.46854 * 240.00130 * 2 1 3
34 34 H 1.07997 * 119.96575 * 359.96308 * 4 3 2
35 35 H 1.08002 * 119.93226 * 180.02562 * 5 4 3
36 36 H 1.07992 * 119.96652 * 180.02562 * 6 5 4
37 37 H 1.08001 * 120.03061 * 179.97438 * 7 6 5
38 38 H 1.08001 * 126.60731 * 359.97438 * 10 9 8
39 39 H 0.97000 * 120.00172 * 179.97438 * 18 17 15
40 40 H 1.08996 * 109.47579 * 205.48361 * 23 14 12
41 41 H 1.09002 * 109.46508 * 325.48354 * 23 14 12
42 42 H 0.96701 * 117.00422 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4207 0.0000
4 6 2.3612 2.0379 -1.1914
5 6 2.8216 3.3416 -1.1922
6 6 2.9539 4.0319 -0.0012
7 6 2.6267 3.4202 1.1931
8 6 2.1598 2.1127 1.1966
9 7 1.8219 1.4907 2.4071
10 6 1.8991 2.0344 3.6414
11 6 1.4702 1.0799 4.5207
12 6 1.3811 1.2339 5.9842
13 8 1.7902 2.2489 6.5148
14 7 0.8464 0.2499 6.7340
15 6 0.6939 0.4236 8.0839
16 1 0.6466 1.4198 8.4983
17 6 0.6000 -0.6823 8.9207
18 7 1.1131 -1.8333 8.5484
19 14 -0.2556 -0.5323 10.5745
20 1 -0.7428 0.8587 10.7553
21 1 -1.4056 -1.4705 10.6236
22 1 0.7021 -0.8658 11.6593
23 6 0.4283 -1.0055 6.1052
24 6 1.6102 -1.9351 6.0051
25 8 2.6907 -1.5851 6.4171
26 8 1.4625 -3.1520 5.4582
27 7 1.1485 -0.0251 3.8257
28 7 1.3445 0.1824 2.5703
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8933 -0.5139 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 2.2586 1.5014 -2.1231
35 1 3.0776 3.8221 -2.1250
36 1 3.3134 5.0502 -0.0050
37 1 2.7307 3.9597 2.1229
38 1 2.2333 3.0319 3.8860
39 1 1.0479 -2.6049 9.1325
40 1 -0.3509 -1.4719 6.7080
41 1 0.0417 -0.8006 5.1069
42 1 2.2491 -3.7129 5.4162
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001610068104.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:09
Heat of formation + Delta-G solvation = 35.415813 kcal
Electronic energy + Delta-G solvation = -30502.077932 eV
Core-core repulsion = 26258.130848 eV
Total energy + Delta-G solvation = -4243.947084 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.132 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.17149 -39.75242 -39.05281 -37.83863 -35.13372 -34.67239 -34.37235 -34.20145
-31.85697 -30.55397 -30.14800 -29.31849 -27.55347 -25.47839 -24.52559 -23.87726
-22.56440 -21.56093 -21.21942 -20.82582 -19.46268 -18.06786 -17.03297 -16.76989
-16.36850 -16.01090 -15.93725 -15.43864 -15.32360 -15.12536 -14.60607 -14.44407
-14.23745 -13.99077 -13.92199 -13.77676 -13.54875 -13.06605 -12.87993 -12.54027
-12.13757 -12.04351 -11.81154 -11.76034 -11.64736 -11.60008 -11.13412 -11.10553
-11.02644 -10.70963 -10.54754 -10.38515 -10.26448 -9.99375 -9.46860 -9.22007
-9.05266 -8.99968 -8.75742 -8.45216 -7.86770 -6.48551 -3.92962 0.45092
0.98124 1.82352 2.13778 2.23671 3.15327 3.23452 3.30717 3.41944
3.78870 3.88893 4.11977 4.25600 4.41314 4.44973 4.54359 4.63407
4.71957 4.88683 4.95157 5.07082 5.14374 5.22594 5.27545 5.40082
5.42441 5.43596 5.50714 5.72564 5.87891 5.94164 5.97546 6.11757
6.15448 6.29545 6.33979 6.38196 6.45403 6.60673 6.70449 6.89037
7.48602 7.73635 7.94752 8.21339 8.35805 9.01470 9.17717 9.36205
9.79896 10.57526
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.019360 B = 0.003239 C = 0.002939
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1445.907624 B = 8643.424913 C = 9525.169921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.098 4.098
3 C -0.068 4.068
4 C -0.101 4.101
5 C -0.119 4.119
6 C -0.103 4.103
7 C -0.125 4.125
8 C 0.143 3.857
9 N -0.315 5.315
10 C 0.065 3.935
11 C -0.049 4.049
12 C 0.523 3.477
13 O -0.576 6.576
14 N -0.401 5.401
15 C -0.310 4.310
16 H 0.110 0.890
17 C 0.035 3.965
18 N -0.853 5.853
19 Si 0.928 3.072
20 H -0.265 1.265
21 H -0.278 1.278
22 H -0.281 1.281
23 C 0.135 3.865
24 C 0.502 3.498
25 O -0.501 6.501
26 O -0.535 6.535
27 N -0.213 5.213
28 N -0.066 5.066
29 H 0.055 0.945
30 H 0.046 0.954
31 H 0.061 0.939
32 H 0.106 0.894
33 H 0.069 0.931
34 H 0.132 0.868
35 H 0.129 0.871
36 H 0.134 0.866
37 H 0.135 0.865
38 H 0.201 0.799
39 H 0.271 0.729
40 H 0.108 0.892
41 H 0.113 0.887
42 H 0.389 0.611
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.461 4.688 -19.413 19.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.135 4.135
3 C -0.070 4.070
4 C -0.119 4.119
5 C -0.137 4.137
6 C -0.121 4.121
7 C -0.146 4.146
8 C 0.051 3.949
9 N -0.095 5.095
10 C -0.087 4.087
11 C -0.186 4.186
12 C 0.310 3.690
13 O -0.459 6.459
14 N -0.118 5.118
15 C -0.438 4.438
16 H 0.128 0.872
17 C -0.171 4.171
18 N -0.490 5.490
19 Si 0.754 3.246
20 H -0.189 1.189
21 H -0.204 1.204
22 H -0.207 1.207
23 C 0.008 3.992
24 C 0.342 3.658
25 O -0.386 6.386
26 O -0.346 6.346
27 N -0.086 5.086
28 N -0.043 5.043
29 H 0.074 0.926
30 H 0.065 0.935
31 H 0.080 0.920
32 H 0.123 0.877
33 H 0.087 0.913
34 H 0.150 0.850
35 H 0.147 0.853
36 H 0.152 0.848
37 H 0.153 0.847
38 H 0.218 0.782
39 H 0.082 0.918
40 H 0.126 0.874
41 H 0.130 0.870
42 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges -0.710 4.019 -19.513 19.935
hybrid contribution 0.700 0.354 1.265 1.488
sum -0.010 4.373 -18.247 18.764
Atomic orbital electron populations
1.21579 0.94168 1.02072 1.01256 1.20920 0.96963 0.91256 1.04385
1.19802 0.99004 0.97384 0.90818 1.20986 0.98925 0.95032 0.96999
1.21262 0.99411 0.94663 0.98400 1.20979 0.99578 1.00203 0.91385
1.20990 1.00843 0.92631 1.00124 1.17550 1.02116 0.92562 0.82719
1.47533 1.44777 1.12293 1.04895 1.23227 1.01282 1.01347 0.82856
1.22086 1.08770 0.90350 0.97412 1.16529 0.83197 0.86848 0.82417
1.90637 1.52540 1.30750 1.71993 1.43237 1.50354 1.10667 1.07528
1.19754 1.48449 0.95091 0.80494 0.87225 1.25397 0.96328 0.95301
1.00097 1.69939 1.38039 1.02119 1.38915 0.85845 0.78970 0.78895
0.80880 1.18886 1.20378 1.20715 1.20941 0.93533 0.84699 0.99981
1.23325 0.90930 0.79763 0.71813 1.90584 1.28906 1.75509 1.43566
1.84505 1.44043 1.29117 1.76893 1.74766 1.12646 1.22476 0.98715
1.81939 1.18566 0.92615 1.11179 0.92602 0.93463 0.91992 0.87658
0.91281 0.84980 0.85320 0.84838 0.84673 0.78197 0.91822 0.87432
0.86975 0.75551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.49 9.46 37.16 0.35 -1.13 16
2 C -0.10 -1.11 5.34 -27.88 -0.15 -1.26 16
3 C -0.07 -0.77 5.15 -104.45 -0.54 -1.30 16
4 C -0.10 -0.87 9.68 -39.61 -0.38 -1.25 16
5 C -0.12 -0.89 10.04 -39.55 -0.40 -1.28 16
6 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16
7 C -0.12 -1.29 9.47 -39.41 -0.37 -1.66 16
8 C 0.14 1.83 6.68 -83.58 -0.56 1.27 16
9 N -0.31 -4.95 3.81 -10.40 -0.04 -4.99 16
10 C 0.06 1.12 10.61 -16.68 -0.18 0.94 16
11 C -0.05 -1.04 6.71 -83.54 -0.56 -1.60 16
12 C 0.52 13.40 7.47 -12.52 -0.09 13.30 16
13 O -0.58 -15.97 16.58 5.25 0.09 -15.88 16
14 N -0.40 -10.58 2.14 -117.32 -0.25 -10.83 16
15 C -0.31 -8.60 9.17 -14.98 -0.14 -8.74 16
16 H 0.11 3.11 7.52 -52.49 -0.39 2.71 16
17 C 0.03 0.92 4.75 -17.46 -0.08 0.83 16
18 N -0.85 -23.01 9.17 55.50 0.51 -22.50 16
19 Si 0.93 20.25 29.62 -169.99 -5.03 15.21 16
20 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16
21 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16
22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16
23 C 0.14 3.19 4.81 -5.20 -0.02 3.17 16
24 C 0.50 12.18 5.66 36.00 0.20 12.38 16
25 O -0.50 -14.10 16.19 -18.75 -0.30 -14.41 16
26 O -0.53 -10.80 13.42 -39.26 -0.53 -11.32 16
27 N -0.21 -4.31 8.16 32.85 0.27 -4.04 16
28 N -0.07 -1.16 8.54 60.35 0.52 -0.64 16
29 H 0.05 0.74 7.17 -51.93 -0.37 0.37 16
30 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16
31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.11 1.47 5.42 -51.93 -0.28 1.19 16
33 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16
34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16
35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16
36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16
37 H 0.14 1.22 6.82 -52.49 -0.36 0.86 16
38 H 0.20 2.84 7.13 -52.49 -0.37 2.46 16
39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16
40 H 0.11 2.54 6.98 -51.93 -0.36 2.18 16
41 H 0.11 2.42 5.13 -51.93 -0.27 2.16 16
42 H 0.39 6.25 9.10 45.56 0.41 6.66 16
LS Contribution 356.07 15.07 5.37 5.37
Total: -1.00 -35.22 356.07 -6.39 -41.61
By element:
Atomic # 1 Polarization: 13.65 SS G_CDS: -3.66 Total: 9.99 kcal
Atomic # 6 Polarization: 15.76 SS G_CDS: -3.32 Total: 12.45 kcal
Atomic # 7 Polarization: -44.01 SS G_CDS: 1.00 Total: -43.01 kcal
Atomic # 8 Polarization: -40.87 SS G_CDS: -0.74 Total: -41.61 kcal
Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.21 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -35.22 -6.39 -41.61 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001610068104.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.025 kcal
(2) G-P(sol) polarization free energy of solvation -35.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.805 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.416 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds