Wall clock time and date at job start Sat Apr 11 2020 07:05:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50693 * 109.47083 * 2 1
4 4 C 1.38144 * 120.03410 * 264.99613 * 3 2 1
5 5 C 1.38261 * 120.06731 * 179.97438 * 4 3 2
6 6 C 1.38301 * 120.13155 * 359.97438 * 5 4 3
7 7 C 1.38107 * 120.06491 * 0.02562 * 6 5 4
8 8 C 1.38813 * 120.03597 * 84.72476 * 3 2 1
9 9 N 1.40228 * 120.06210 * 0.02562 * 8 3 2
10 10 C 1.35096 * 126.61007 * 179.71519 * 9 8 3
11 11 C 1.36685 * 106.78106 * 179.85556 * 10 9 8
12 12 C 1.47421 * 125.77777 * 180.16174 * 11 10 9
13 13 O 1.21627 * 119.99713 * 355.02251 * 12 11 10
14 14 N 1.34769 * 120.00388 * 175.02541 * 12 11 10
15 15 C 1.36953 * 120.00288 * 183.71228 * 14 12 11
16 16 H 1.08000 * 119.99960 * 22.55528 * 15 14 12
17 17 C 1.38991 * 120.00382 * 202.55605 * 15 14 12
18 18 N 1.31401 * 119.99834 * 24.25268 * 17 15 14
19 19 Si 1.86804 * 120.00207 * 204.25472 * 17 15 14
20 20 H 1.48490 * 109.47001 * 359.97438 * 19 17 15
21 21 H 1.48503 * 109.46786 * 120.00119 * 19 17 15
22 22 H 1.48504 * 109.46940 * 239.99767 * 19 17 15
23 23 C 1.46502 * 120.00436 * 3.71104 * 14 12 11
24 24 C 1.50695 * 109.46953 * 85.47419 * 23 14 12
25 25 O 1.20822 * 120.00390 * 0.02562 * 24 23 14
26 26 O 1.34231 * 120.00112 * 180.02562 * 24 23 14
27 27 N 1.34447 * 108.45113 * 0.41309 * 11 10 9
28 28 N 1.28747 * 109.58237 * 359.74332 * 27 11 10
29 29 H 1.08993 * 109.47242 * 300.00119 * 1 2 3
30 30 H 1.09007 * 109.47047 * 59.99899 * 1 2 3
31 31 H 1.08998 * 109.47102 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.46917 * 120.00325 * 2 1 3
33 33 H 1.08998 * 109.46854 * 240.00130 * 2 1 3
34 34 H 1.07997 * 119.96575 * 359.96308 * 4 3 2
35 35 H 1.08002 * 119.93226 * 180.02562 * 5 4 3
36 36 H 1.07992 * 119.96652 * 180.02562 * 6 5 4
37 37 H 1.08001 * 120.03061 * 179.97438 * 7 6 5
38 38 H 1.08001 * 126.60731 * 359.97438 * 10 9 8
39 39 H 0.97000 * 120.00172 * 179.97438 * 18 17 15
40 40 H 1.08996 * 109.47579 * 205.48361 * 23 14 12
41 41 H 1.09002 * 109.46508 * 325.48354 * 23 14 12
42 42 H 0.96701 * 117.00422 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4207 0.0000
4 6 2.3612 2.0379 -1.1914
5 6 2.8216 3.3416 -1.1922
6 6 2.9539 4.0319 -0.0012
7 6 2.6267 3.4202 1.1931
8 6 2.1598 2.1127 1.1966
9 7 1.8219 1.4907 2.4071
10 6 1.8991 2.0344 3.6414
11 6 1.4702 1.0799 4.5207
12 6 1.3811 1.2339 5.9842
13 8 1.7902 2.2489 6.5148
14 7 0.8464 0.2499 6.7340
15 6 0.6939 0.4236 8.0839
16 1 0.6466 1.4198 8.4983
17 6 0.6000 -0.6823 8.9207
18 7 1.1131 -1.8333 8.5484
19 14 -0.2556 -0.5323 10.5745
20 1 -0.7428 0.8587 10.7553
21 1 -1.4056 -1.4705 10.6236
22 1 0.7021 -0.8658 11.6593
23 6 0.4283 -1.0055 6.1052
24 6 1.6102 -1.9351 6.0051
25 8 2.6907 -1.5851 6.4171
26 8 1.4625 -3.1520 5.4582
27 7 1.1485 -0.0251 3.8257
28 7 1.3445 0.1824 2.5703
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8933 -0.5139 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 2.2586 1.5014 -2.1231
35 1 3.0776 3.8221 -2.1250
36 1 3.3134 5.0502 -0.0050
37 1 2.7307 3.9597 2.1229
38 1 2.2333 3.0319 3.8860
39 1 1.0479 -2.6049 9.1325
40 1 -0.3509 -1.4719 6.7080
41 1 0.0417 -0.8006 5.1069
42 1 2.2491 -3.7129 5.4162
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001610068104.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:08
Heat of formation + Delta-G solvation = 12.240316 kcal
Electronic energy + Delta-G solvation = -30503.082897 eV
Core-core repulsion = 26258.130848 eV
Total energy + Delta-G solvation = -4244.952049 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.132 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-43.53820 -41.10996 -40.46677 -39.72611 -37.04064 -36.29683 -35.71880 -35.19916
-33.82507 -31.94118 -31.08800 -30.25301 -29.44765 -27.30444 -25.54488 -25.06995
-23.94248 -22.83710 -22.56400 -22.20282 -20.90205 -19.39448 -18.95301 -18.61914
-17.79041 -17.54118 -17.18444 -16.82564 -16.67018 -16.52189 -16.11806 -16.02657
-15.75037 -15.25239 -15.17693 -14.95423 -14.64871 -14.61199 -14.27583 -13.71289
-13.61162 -13.55333 -13.32286 -13.17850 -12.88559 -12.73464 -12.52602 -12.50449
-12.23188 -12.13938 -12.09714 -11.91354 -11.75266 -11.57906 -11.44280 -10.97947
-10.75295 -10.48241 -9.88243 -9.85852 -9.45510 -8.46864 -6.01884 -0.58357
0.27847 0.60460 0.77266 0.94277 1.42443 1.44029 1.60071 1.88019
2.10250 2.30434 2.59425 2.68565 2.79463 3.09693 3.19400 3.32906
3.64142 3.78187 3.85018 3.93875 4.12628 4.25131 4.31542 4.42316
4.46645 4.50340 4.53312 4.56670 4.70947 4.80670 4.93280 4.95085
5.07010 5.22687 5.30552 5.37819 5.41970 5.46197 5.47129 5.58115
5.94029 5.97788 6.00321 6.30249 6.80922 7.00765 7.21455 7.51786
7.82278 8.58839
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.019360 B = 0.003239 C = 0.002939
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1445.907624 B = 8643.424913 C = 9525.169921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.098 4.098
3 C -0.078 4.078
4 C -0.101 4.101
5 C -0.101 4.101
6 C -0.100 4.100
7 C -0.129 4.129
8 C 0.094 3.906
9 N -0.296 5.296
10 C 0.083 3.917
11 C -0.085 4.085
12 C 0.518 3.482
13 O -0.611 6.611
14 N -0.417 5.417
15 C -0.350 4.350
16 H 0.090 0.910
17 C 0.001 3.999
18 N -0.877 5.877
19 Si 1.000 3.000
20 H -0.264 1.264
21 H -0.260 1.260
22 H -0.282 1.282
23 C 0.140 3.860
24 C 0.511 3.489
25 O -0.546 6.546
26 O -0.521 6.521
27 N -0.236 5.236
28 N -0.060 5.060
29 H 0.027 0.973
30 H 0.066 0.934
31 H 0.063 0.937
32 H 0.075 0.925
33 H 0.093 0.907
34 H 0.160 0.840
35 H 0.166 0.834
36 H 0.165 0.835
37 H 0.142 0.858
38 H 0.227 0.773
39 H 0.275 0.725
40 H 0.104 0.896
41 H 0.131 0.869
42 H 0.409 0.591
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.364 5.581 -22.553 23.236
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.136 4.136
3 C -0.080 4.080
4 C -0.119 4.119
5 C -0.120 4.120
6 C -0.119 4.119
7 C -0.150 4.150
8 C 0.004 3.996
9 N -0.075 5.075
10 C -0.071 4.071
11 C -0.223 4.223
12 C 0.306 3.694
13 O -0.497 6.497
14 N -0.133 5.133
15 C -0.477 4.477
16 H 0.107 0.893
17 C -0.203 4.203
18 N -0.513 5.513
19 Si 0.822 3.178
20 H -0.188 1.188
21 H -0.185 1.185
22 H -0.208 1.208
23 C 0.014 3.986
24 C 0.353 3.647
25 O -0.434 6.434
26 O -0.333 6.333
27 N -0.108 5.108
28 N -0.038 5.038
29 H 0.046 0.954
30 H 0.085 0.915
31 H 0.082 0.918
32 H 0.094 0.906
33 H 0.112 0.888
34 H 0.177 0.823
35 H 0.183 0.817
36 H 0.182 0.818
37 H 0.160 0.840
38 H 0.244 0.756
39 H 0.085 0.915
40 H 0.122 0.878
41 H 0.148 0.852
42 H 0.268 0.732
Dipole moment (debyes) X Y Z Total
from point charges -0.624 4.868 -22.723 23.247
hybrid contribution 0.784 0.166 1.867 2.032
sum 0.160 5.033 -20.856 21.455
Atomic orbital electron populations
1.21535 0.94205 1.02109 1.00757 1.20880 0.96921 0.91696 1.04060
1.19983 0.99360 0.97281 0.91365 1.21340 0.98030 0.95739 0.96821
1.21768 0.96572 0.93946 0.99678 1.21411 0.98373 1.01503 0.90569
1.21270 1.00289 0.91683 1.01732 1.18056 1.05690 0.94066 0.81814
1.47673 1.42783 1.11379 1.05638 1.23489 0.99330 1.01529 0.82725
1.21577 1.12562 0.92420 0.95786 1.17081 0.81957 0.86060 0.84258
1.90573 1.53841 1.31841 1.73447 1.43378 1.50861 1.11645 1.07425
1.19781 1.51187 0.94898 0.81822 0.89264 1.26268 0.95952 0.94546
1.03530 1.70017 1.38335 1.02676 1.40275 0.84811 0.78012 0.79100
0.75906 1.18796 1.18496 1.20777 1.20984 0.93204 0.83883 1.00573
1.23341 0.90221 0.80404 0.70755 1.90559 1.30468 1.76614 1.45782
1.84434 1.45143 1.27909 1.75811 1.74637 1.13861 1.22739 0.99577
1.81926 1.18383 0.93690 1.09762 0.95351 0.91536 0.91754 0.90644
0.88829 0.82268 0.81650 0.81767 0.83977 0.75622 0.91479 0.87841
0.85212 0.73201
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.74 9.46 71.98 0.68 -2.06 16
2 C -0.10 -2.09 5.34 29.85 0.16 -1.93 16
3 C -0.08 -1.59 5.15 -19.75 -0.10 -1.69 16
4 C -0.10 -1.32 9.68 22.25 0.22 -1.11 16
5 C -0.10 -1.00 10.04 22.29 0.22 -0.77 16
6 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16
7 C -0.13 -2.35 9.47 22.38 0.21 -2.14 16
8 C 0.09 2.29 6.68 38.08 0.25 2.55 16
9 N -0.30 -9.32 3.81 -186.82 -0.71 -10.03 16
10 C 0.08 2.90 10.61 83.83 0.89 3.79 16
11 C -0.09 -3.79 6.71 40.80 0.27 -3.52 16
12 C 0.52 27.99 7.47 86.66 0.65 28.64 16
13 O -0.61 -35.77 16.58 -4.12 -0.07 -35.84 16
14 N -0.42 -23.12 2.14 -643.33 -1.38 -24.50 16
15 C -0.35 -20.35 9.17 84.07 0.77 -19.58 16
16 H 0.09 5.40 7.52 -2.91 -0.02 5.38 16
17 C 0.00 0.05 4.75 84.94 0.40 0.45 16
18 N -0.88 -48.33 9.17 21.67 0.20 -48.13 16
19 Si 1.00 42.39 29.62 68.60 2.03 44.43 16
20 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16
21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16
22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16
23 C 0.14 6.87 4.81 85.63 0.41 7.28 16
24 C 0.51 25.49 5.66 71.23 0.40 25.90 16
25 O -0.55 -31.84 16.19 21.98 0.36 -31.49 16
26 O -0.52 -21.08 13.42 -51.43 -0.69 -21.77 16
27 N -0.24 -9.87 8.16 -49.99 -0.41 -10.28 16
28 N -0.06 -2.16 8.54 37.02 0.32 -1.84 16
29 H 0.03 0.75 7.17 -2.39 -0.02 0.73 16
30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16
31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
32 H 0.08 2.10 5.42 -2.39 -0.01 2.09 16
33 H 0.09 1.49 8.05 -2.39 -0.02 1.47 16
34 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16
35 H 0.17 0.50 8.06 -2.91 -0.02 0.47 16
36 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16
37 H 0.14 2.29 6.82 -2.91 -0.02 2.27 16
38 H 0.23 6.41 7.13 -2.91 -0.02 6.39 16
39 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16
40 H 0.10 5.08 6.98 -2.39 -0.02 5.06 16
41 H 0.13 5.86 5.13 -2.39 -0.01 5.85 16
42 H 0.41 12.97 9.10 -74.06 -0.67 12.30 16
Total: -1.00 -81.50 356.07 5.74 -75.76
By element:
Atomic # 1 Polarization: 28.40 SS G_CDS: 0.43 Total: 28.83 kcal
Atomic # 6 Polarization: 29.19 SS G_CDS: 5.67 Total: 34.86 kcal
Atomic # 7 Polarization: -92.80 SS G_CDS: -1.98 Total: -94.78 kcal
Atomic # 8 Polarization: -88.69 SS G_CDS: -0.40 Total: -89.10 kcal
Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.43 kcal
Total: -81.50 5.74 -75.76 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001610068104.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.002 kcal
(2) G-P(sol) polarization free energy of solvation -81.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds