Wall clock time and date at job start Sat Apr 11 2020 07:06:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09000 * 109.59101 * 2 1
4 4 C 1.53196 * 109.58516 * 120.28081 * 2 1 3
5 5 C 1.53039 * 109.31298 * 174.41982 * 4 2 1
6 6 H 1.09002 * 109.46023 * 58.64216 * 5 4 2
7 7 N 1.46497 * 109.46225 * 178.61896 * 5 4 2
8 8 C 1.36935 * 120.00070 * 205.00155 * 7 5 4
9 9 H 1.08005 * 120.00145 * 359.97438 * 8 7 5
10 10 C 1.38811 * 120.00354 * 179.97438 * 8 7 5
11 11 N 1.31613 * 119.99611 * 359.97438 * 10 8 7
12 12 Si 1.86795 * 120.00181 * 180.02562 * 10 8 7
13 13 H 1.48504 * 109.47107 * 179.97438 * 12 10 8
14 14 H 1.48502 * 109.47626 * 59.99504 * 12 10 8
15 15 H 1.48502 * 109.47023 * 299.99740 * 12 10 8
16 16 C 1.53042 * 109.53771 * 298.63677 * 5 4 2
17 17 C 1.53196 * 109.31430 * 61.36324 * 16 5 4
18 18 N 1.46923 * 109.58449 * 239.56728 * 2 1 3
19 19 C 1.34774 * 120.63180 * 6.58849 * 18 2 1
20 20 O 1.21282 * 120.00201 * 5.70468 * 19 18 2
21 21 C 1.50700 * 119.99975 * 185.70887 * 19 18 2
22 22 C 1.53002 * 109.47118 * 180.02562 * 21 19 18
23 23 F 1.39910 * 109.46756 * 300.00020 * 22 21 19
24 24 F 1.39901 * 109.47443 * 59.99588 * 22 21 19
25 25 C 1.53003 * 109.47259 * 180.02562 * 22 21 19
26 26 F 1.39897 * 109.47153 * 59.99786 * 25 22 21
27 27 F 1.39898 * 109.46846 * 179.97438 * 25 22 21
28 28 F 1.39899 * 109.46648 * 299.99757 * 25 22 21
29 29 H 1.09012 * 109.47156 * 294.19289 * 1 2 3
30 30 H 1.09004 * 109.47353 * 54.18660 * 1 2 3
31 31 H 1.09002 * 109.47678 * 174.19460 * 1 2 3
32 32 H 1.09000 * 109.49646 * 54.47365 * 4 2 1
33 33 H 1.08997 * 109.49677 * 294.37122 * 4 2 1
34 34 H 0.96997 * 120.00018 * 24.99230 * 7 5 4
35 35 H 0.97004 * 120.00547 * 0.02562 * 11 10 8
36 36 H 1.09001 * 109.49804 * 181.31684 * 16 5 4
37 37 H 1.08998 * 109.49919 * 301.41325 * 16 5 4
38 38 H 1.09002 * 109.58842 * 185.57351 * 17 16 5
39 39 H 1.09006 * 109.70263 * 65.22244 * 17 16 5
40 40 H 1.09000 * 109.47037 * 299.99419 * 21 19 18
41 41 H 1.09000 * 109.47418 * 59.99832 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0435 -0.7278 1.2464
5 6 3.5674 -0.8466 1.1713
6 1 4.0061 0.1487 1.0989
7 7 4.0651 -1.5128 2.3773
8 6 5.3496 -1.2953 2.7991
9 1 5.9959 -0.6329 2.2424
10 6 5.8211 -1.9262 3.9422
11 7 5.0333 -2.7331 4.6208
12 14 7.5730 -1.6289 4.5179
13 1 7.8280 -2.4131 5.7529
14 1 7.7624 -0.1836 4.8018
15 1 8.5215 -2.0533 3.4569
16 6 3.9568 -1.6659 -0.0613
17 6 3.4649 -0.9488 -1.3225
18 7 2.0224 -0.7012 -1.1935
19 6 1.1672 -1.1097 -2.1517
20 8 -0.0061 -0.8101 -2.0852
21 6 1.6689 -1.9390 -3.3057
22 6 0.5046 -2.2658 -4.2430
23 9 -0.4708 -2.9834 -3.5423
24 9 -0.0503 -1.0772 -4.7294
25 6 1.0138 -3.1083 -5.4143
26 9 1.5684 -4.2968 -4.9275
27 9 -0.0509 -3.4075 -6.2710
28 9 1.9895 -2.3911 -6.1150
29 1 -0.3634 0.4212 0.9375
30 1 -0.3634 0.6013 -0.8334
31 1 -0.3634 -1.0224 -0.1039
32 1 1.6029 -1.7237 1.2936
33 1 1.7660 -0.1640 2.1370
34 1 3.4847 -2.1080 2.8772
35 1 4.1233 -2.8872 4.3221
36 1 5.0411 -1.7699 -0.1013
37 1 3.4981 -2.6529 -0.0018
38 1 3.6517 -1.5747 -2.1951
39 1 3.9900 -0.0001 -1.4342
40 1 2.4285 -1.3797 -3.8518
41 1 2.1017 -2.8649 -2.9268
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001754603711.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:25
Heat of formation + Delta-G solvation = -256.444404 kcal
Electronic energy + Delta-G solvation = -32090.316858 eV
Core-core repulsion = 26841.167839 eV
Total energy + Delta-G solvation = -5249.149019 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.126 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-51.12968 -49.50974 -48.66596 -48.35915 -47.52004 -40.66151 -37.69174 -34.87709
-33.94994 -32.20265 -32.12904 -29.28070 -28.02856 -26.99876 -24.28436 -23.45118
-23.14563 -21.86567 -20.52155 -19.86520 -19.58196 -19.27896 -18.78713 -17.82139
-17.36910 -17.11469 -16.79279 -16.06689 -15.55699 -15.32430 -15.19599 -15.14485
-14.94149 -14.76949 -14.51147 -14.49124 -14.47652 -14.22309 -14.03127 -14.00916
-13.82587 -13.62085 -13.44818 -13.16857 -12.98359 -12.65693 -12.26988 -12.11557
-11.80745 -11.75979 -11.53892 -10.95433 -10.91791 -10.66277 -10.55007 -10.20451
-10.04139 -9.38609 -9.20413 -8.99690 -8.65950 -7.13659 -6.17299 -3.18549
1.26363 2.28361 2.51099 2.62932 2.92833 2.98737 3.12113 3.46506
3.49552 3.67419 3.80469 3.84600 4.11686 4.58476 4.62168 4.66435
4.83127 4.98218 5.06595 5.15458 5.31443 5.39023 5.53840 5.63294
5.71838 5.85269 5.95786 6.03705 6.15171 6.24165 6.29052 6.33909
6.57021 6.70388 6.85210 7.22087 7.72026 7.89140 8.68008 9.13947
10.00509 10.15138 11.30744
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.018772 B = 0.002724 C = 0.002532
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1491.251020 B =10275.260650 C =11054.752574
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.149 3.851
3 H 0.075 0.925
4 C -0.137 4.137
5 C 0.184 3.816
6 H 0.050 0.950
7 N -0.735 5.735
8 C -0.334 4.334
9 H 0.065 0.935
10 C -0.043 4.043
11 N -0.942 5.942
12 Si 1.079 2.921
13 H -0.285 1.285
14 H -0.295 1.295
15 H -0.295 1.295
16 C -0.152 4.152
17 C 0.103 3.897
18 N -0.596 5.596
19 C 0.522 3.478
20 O -0.519 6.519
21 C -0.201 4.201
22 C 0.287 3.713
23 F -0.152 7.152
24 F -0.153 7.153
25 C 0.426 3.574
26 F -0.156 7.156
27 F -0.160 7.160
28 F -0.158 7.158
29 H 0.047 0.953
30 H 0.076 0.924
31 H 0.064 0.936
32 H 0.063 0.937
33 H 0.077 0.923
34 H 0.367 0.633
35 H 0.255 0.745
36 H 0.078 0.922
37 H 0.059 0.941
38 H 0.076 0.924
39 H 0.074 0.926
40 H 0.137 0.863
41 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.606 2.019 -21.230 22.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.047 3.953
3 H 0.093 0.907
4 C -0.176 4.176
5 C 0.074 3.926
6 H 0.068 0.932
7 N -0.376 5.376
8 C -0.465 4.465
9 H 0.083 0.917
10 C -0.241 4.241
11 N -0.587 5.587
12 Si 0.910 3.090
13 H -0.210 1.210
14 H -0.222 1.222
15 H -0.222 1.222
16 C -0.193 4.193
17 C -0.020 4.020
18 N -0.329 5.329
19 C 0.308 3.692
20 O -0.396 6.396
21 C -0.242 4.242
22 C 0.248 3.752
23 F -0.133 7.133
24 F -0.134 7.134
25 C 0.370 3.630
26 F -0.138 7.138
27 F -0.141 7.141
28 F -0.139 7.139
29 H 0.066 0.934
30 H 0.095 0.905
31 H 0.083 0.917
32 H 0.082 0.918
33 H 0.095 0.905
34 H 0.200 0.800
35 H 0.067 0.933
36 H 0.097 0.903
37 H 0.078 0.922
38 H 0.095 0.905
39 H 0.092 0.908
40 H 0.155 0.845
41 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -6.963 1.943 -20.098 21.359
hybrid contribution -1.112 -0.057 -1.341 1.743
sum -8.075 1.886 -21.439 22.987
Atomic orbital electron populations
1.22210 0.92645 1.03607 1.01108 1.21347 0.95567 0.95177 0.83247
0.90706 1.22332 0.97597 1.00984 0.96656 1.20096 0.90721 0.95048
0.86778 0.93225 1.42432 1.13059 1.54899 1.27251 1.20015 0.89564
1.26626 1.10323 0.91730 1.25775 1.06271 0.97507 0.94567 1.70883
1.08132 1.38332 1.41340 0.83256 0.74084 0.75518 0.76172 1.21026
1.22238 1.22240 1.22684 1.02029 0.99941 0.94652 1.21969 0.79232
1.01045 0.99754 1.48135 1.07602 1.57035 1.20160 1.19576 0.86332
0.80395 0.82867 1.90850 1.16496 1.56197 1.76036 1.23034 0.97513
1.06021 0.97584 1.21279 0.87261 0.79065 0.87613 1.93201 1.64030
1.77296 1.78730 1.93187 1.86602 1.45545 1.88050 1.20997 0.77156
0.80213 0.84614 1.93293 1.85572 1.47455 1.87446 1.93293 1.55482
1.93456 1.71885 1.93279 1.63057 1.77476 1.80114 0.93432 0.90547
0.91735 0.91818 0.90475 0.79986 0.93335 0.90298 0.92180 0.90525
0.90752 0.84518 0.84327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 23.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.85 7.61 37.16 0.28 -1.57 16
2 C 0.15 1.97 3.49 -67.60 -0.24 1.74 16
3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
4 C -0.14 -2.11 4.84 -26.61 -0.13 -2.24 16
5 C 0.18 3.30 2.73 -67.89 -0.19 3.11 16
6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16
7 N -0.73 -17.27 5.12 -53.39 -0.27 -17.55 16
8 C -0.33 -8.91 9.93 -15.06 -0.15 -9.06 16
9 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16
10 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16
11 N -0.94 -28.39 13.70 55.49 0.76 -27.63 16
12 Si 1.08 25.02 29.92 -169.99 -5.09 19.93 16
13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16
15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16
16 C -0.15 -2.29 5.66 -26.61 -0.15 -2.44 16
17 C 0.10 1.12 6.35 -3.71 -0.02 1.09 16
18 N -0.60 -7.23 2.97 -165.22 -0.49 -7.72 16
19 C 0.52 6.36 7.27 -10.99 -0.08 6.28 16
20 O -0.52 -7.73 10.40 5.56 0.06 -7.67 16
21 C -0.20 -1.75 3.41 -27.88 -0.10 -1.84 16
22 C 0.29 2.90 1.20 -26.73 -0.03 2.87 16
23 F -0.15 -1.85 16.10 2.25 0.04 -1.82 16
24 F -0.15 -1.78 16.11 2.25 0.04 -1.74 16
25 C 0.43 3.74 2.65 37.16 0.10 3.84 16
26 F -0.16 -1.34 16.78 2.25 0.04 -1.31 16
27 F -0.16 -1.56 17.28 2.25 0.04 -1.52 16
28 F -0.16 -1.27 16.78 2.25 0.04 -1.23 16
29 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16
30 H 0.08 1.07 6.58 -51.93 -0.34 0.73 16
31 H 0.06 0.96 6.92 -51.93 -0.36 0.60 16
32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
34 H 0.37 9.07 6.63 -40.82 -0.27 8.80 16
35 H 0.26 7.58 6.78 -40.82 -0.28 7.30 16
36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16
37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
38 H 0.08 0.60 5.93 -51.93 -0.31 0.30 16
39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
40 H 0.14 0.80 7.37 -51.93 -0.38 0.42 16
41 H 0.14 0.96 7.58 -51.93 -0.39 0.57 16
LS Contribution 347.79 15.07 5.24 5.24
Total: -1.00 -31.51 347.79 -5.32 -36.82
By element:
Atomic # 1 Polarization: 10.61 SS G_CDS: -4.92 Total: 5.69 kcal
Atomic # 6 Polarization: 1.28 SS G_CDS: -0.80 Total: 0.49 kcal
Atomic # 7 Polarization: -52.89 SS G_CDS: 0.00 Total: -52.90 kcal
Atomic # 8 Polarization: -7.73 SS G_CDS: 0.06 Total: -7.67 kcal
Atomic # 9 Polarization: -7.80 SS G_CDS: 0.19 Total: -7.61 kcal
Atomic # 14 Polarization: 25.02 SS G_CDS: -5.09 Total: 19.93 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -31.51 -5.32 -36.82 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754603711.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -219.622 kcal
(2) G-P(sol) polarization free energy of solvation -31.506 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.127 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal
(6) G-S(sol) free energy of system = (1) + (5) -256.444 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds