Wall clock time and date at job start Sat Apr 11 2020 07:06:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09000 * 109.59101 * 2 1
4 4 C 1.53196 * 109.58516 * 120.28081 * 2 1 3
5 5 C 1.53039 * 109.31298 * 174.41982 * 4 2 1
6 6 H 1.09002 * 109.46023 * 58.64216 * 5 4 2
7 7 N 1.46497 * 109.46225 * 178.61896 * 5 4 2
8 8 C 1.36935 * 120.00070 * 205.00155 * 7 5 4
9 9 H 1.08005 * 120.00145 * 359.97438 * 8 7 5
10 10 C 1.38811 * 120.00354 * 179.97438 * 8 7 5
11 11 N 1.31613 * 119.99611 * 359.97438 * 10 8 7
12 12 Si 1.86795 * 120.00181 * 180.02562 * 10 8 7
13 13 H 1.48504 * 109.47107 * 179.97438 * 12 10 8
14 14 H 1.48502 * 109.47626 * 59.99504 * 12 10 8
15 15 H 1.48502 * 109.47023 * 299.99740 * 12 10 8
16 16 C 1.53042 * 109.53771 * 298.63677 * 5 4 2
17 17 C 1.53196 * 109.31430 * 61.36324 * 16 5 4
18 18 N 1.46923 * 109.58449 * 239.56728 * 2 1 3
19 19 C 1.34774 * 120.63180 * 6.58849 * 18 2 1
20 20 O 1.21282 * 120.00201 * 5.70468 * 19 18 2
21 21 C 1.50700 * 119.99975 * 185.70887 * 19 18 2
22 22 C 1.53002 * 109.47118 * 180.02562 * 21 19 18
23 23 F 1.39910 * 109.46756 * 300.00020 * 22 21 19
24 24 F 1.39901 * 109.47443 * 59.99588 * 22 21 19
25 25 C 1.53003 * 109.47259 * 180.02562 * 22 21 19
26 26 F 1.39897 * 109.47153 * 59.99786 * 25 22 21
27 27 F 1.39898 * 109.46846 * 179.97438 * 25 22 21
28 28 F 1.39899 * 109.46648 * 299.99757 * 25 22 21
29 29 H 1.09012 * 109.47156 * 294.19289 * 1 2 3
30 30 H 1.09004 * 109.47353 * 54.18660 * 1 2 3
31 31 H 1.09002 * 109.47678 * 174.19460 * 1 2 3
32 32 H 1.09000 * 109.49646 * 54.47365 * 4 2 1
33 33 H 1.08997 * 109.49677 * 294.37122 * 4 2 1
34 34 H 0.96997 * 120.00018 * 24.99230 * 7 5 4
35 35 H 0.97004 * 120.00547 * 0.02562 * 11 10 8
36 36 H 1.09001 * 109.49804 * 181.31684 * 16 5 4
37 37 H 1.08998 * 109.49919 * 301.41325 * 16 5 4
38 38 H 1.09002 * 109.58842 * 185.57351 * 17 16 5
39 39 H 1.09006 * 109.70263 * 65.22244 * 17 16 5
40 40 H 1.09000 * 109.47037 * 299.99419 * 21 19 18
41 41 H 1.09000 * 109.47418 * 59.99832 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0435 -0.7278 1.2464
5 6 3.5674 -0.8466 1.1713
6 1 4.0061 0.1487 1.0989
7 7 4.0651 -1.5128 2.3773
8 6 5.3496 -1.2953 2.7991
9 1 5.9959 -0.6329 2.2424
10 6 5.8211 -1.9262 3.9422
11 7 5.0333 -2.7331 4.6208
12 14 7.5730 -1.6289 4.5179
13 1 7.8280 -2.4131 5.7529
14 1 7.7624 -0.1836 4.8018
15 1 8.5215 -2.0533 3.4569
16 6 3.9568 -1.6659 -0.0613
17 6 3.4649 -0.9488 -1.3225
18 7 2.0224 -0.7012 -1.1935
19 6 1.1672 -1.1097 -2.1517
20 8 -0.0061 -0.8101 -2.0852
21 6 1.6689 -1.9390 -3.3057
22 6 0.5046 -2.2658 -4.2430
23 9 -0.4708 -2.9834 -3.5423
24 9 -0.0503 -1.0772 -4.7294
25 6 1.0138 -3.1083 -5.4143
26 9 1.5684 -4.2968 -4.9275
27 9 -0.0509 -3.4075 -6.2710
28 9 1.9895 -2.3911 -6.1150
29 1 -0.3634 0.4212 0.9375
30 1 -0.3634 0.6013 -0.8334
31 1 -0.3634 -1.0224 -0.1039
32 1 1.6029 -1.7237 1.2936
33 1 1.7660 -0.1640 2.1370
34 1 3.4847 -2.1080 2.8772
35 1 4.1233 -2.8872 4.3221
36 1 5.0411 -1.7699 -0.1013
37 1 3.4981 -2.6529 -0.0018
38 1 3.6517 -1.5747 -2.1951
39 1 3.9900 -0.0001 -1.4342
40 1 2.4285 -1.3797 -3.8518
41 1 2.1017 -2.8649 -2.9268
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754603711.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:25
Heat of formation + Delta-G solvation = -275.473922 kcal
Electronic energy + Delta-G solvation = -32091.142040 eV
Core-core repulsion = 26841.167839 eV
Total energy + Delta-G solvation = -5249.974201 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.126 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-51.83770 -50.30559 -49.37037 -49.07120 -48.31705 -41.68019 -38.92172 -36.48204
-34.88332 -33.84673 -33.06890 -30.83999 -28.95923 -28.15340 -25.87067 -24.65723
-24.29706 -22.90361 -21.79381 -20.77284 -20.28979 -20.10277 -19.66850 -19.28343
-18.59487 -17.96748 -17.72669 -17.05699 -16.88900 -16.31665 -16.10414 -15.91280
-15.84801 -15.83784 -15.45215 -15.40526 -15.34185 -15.20963 -15.15737 -15.08304
-14.88553 -14.86591 -14.57249 -14.39727 -13.83085 -13.60451 -13.39690 -13.25106
-13.15693 -12.76730 -12.63149 -12.51696 -12.41702 -12.08002 -11.97292 -11.87269
-11.63087 -11.18709 -10.87467 -10.33625 -9.71345 -9.10684 -8.35519 -5.30272
0.53001 1.37441 1.60668 1.66223 1.70166 1.85936 1.92989 2.16101
2.27536 2.35759 2.73552 3.06214 3.14400 3.27839 3.42926 3.59579
3.77060 3.93942 4.00027 4.02537 4.09062 4.17981 4.26406 4.50402
4.54040 4.60251 4.70171 4.76544 4.93620 4.98505 5.08305 5.18779
5.34596 5.45196 5.60146 5.63861 6.26898 6.51777 6.95007 7.11606
8.01529 8.14373 9.16232
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.018772 B = 0.002724 C = 0.002532
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1491.251020 B =10275.260650 C =11054.752574
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.154 3.846
3 H 0.088 0.912
4 C -0.124 4.124
5 C 0.176 3.824
6 H 0.047 0.953
7 N -0.751 5.751
8 C -0.324 4.324
9 H 0.071 0.929
10 C -0.107 4.107
11 N -0.980 5.980
12 Si 1.125 2.875
13 H -0.298 1.298
14 H -0.279 1.279
15 H -0.275 1.275
16 C -0.142 4.142
17 C 0.110 3.890
18 N -0.598 5.598
19 C 0.518 3.482
20 O -0.550 6.550
21 C -0.198 4.198
22 C 0.279 3.721
23 F -0.169 7.169
24 F -0.164 7.164
25 C 0.437 3.563
26 F -0.153 7.153
27 F -0.167 7.167
28 F -0.149 7.149
29 H 0.053 0.947
30 H 0.071 0.929
31 H 0.046 0.954
32 H 0.051 0.949
33 H 0.067 0.933
34 H 0.356 0.644
35 H 0.243 0.757
36 H 0.067 0.933
37 H 0.049 0.951
38 H 0.118 0.882
39 H 0.092 0.908
40 H 0.173 0.827
41 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.299 2.778 -23.442 24.432
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.051 3.949
3 H 0.106 0.894
4 C -0.163 4.163
5 C 0.068 3.932
6 H 0.065 0.935
7 N -0.392 5.392
8 C -0.455 4.455
9 H 0.089 0.911
10 C -0.298 4.298
11 N -0.628 5.628
12 Si 0.951 3.049
13 H -0.225 1.225
14 H -0.205 1.205
15 H -0.201 1.201
16 C -0.183 4.183
17 C -0.012 4.012
18 N -0.331 5.331
19 C 0.306 3.694
20 O -0.429 6.429
21 C -0.238 4.238
22 C 0.241 3.759
23 F -0.149 7.149
24 F -0.145 7.145
25 C 0.381 3.619
26 F -0.134 7.134
27 F -0.148 7.148
28 F -0.130 7.130
29 H 0.072 0.928
30 H 0.090 0.910
31 H 0.065 0.935
32 H 0.070 0.930
33 H 0.086 0.914
34 H 0.188 0.812
35 H 0.053 0.947
36 H 0.086 0.914
37 H 0.068 0.932
38 H 0.136 0.864
39 H 0.110 0.890
40 H 0.191 0.809
41 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -5.662 2.730 -22.384 23.250
hybrid contribution -1.593 -0.251 -0.706 1.760
sum -7.254 2.479 -23.090 24.329
Atomic orbital electron populations
1.22060 0.92736 1.02375 1.01232 1.21222 0.95340 0.95551 0.82762
0.89400 1.22169 0.95851 1.00534 0.97795 1.20382 0.92023 0.94762
0.86035 0.93512 1.42688 1.12168 1.55217 1.29121 1.20370 0.90662
1.24979 1.09519 0.91073 1.27129 1.09387 0.97781 0.95527 1.70994
1.08074 1.40928 1.42826 0.82651 0.70604 0.76042 0.75639 1.22493
1.20475 1.20080 1.22447 1.01288 0.99304 0.95262 1.22044 0.78220
1.02226 0.98742 1.48160 1.08226 1.56905 1.19772 1.20091 0.85857
0.80048 0.83413 1.90846 1.17881 1.57236 1.76912 1.23152 0.97530
1.06855 0.96232 1.21589 0.87267 0.78775 0.88315 1.93168 1.64902
1.77651 1.79200 1.93163 1.86883 1.46208 1.88228 1.20697 0.77064
0.80071 0.84044 1.93306 1.85447 1.47254 1.87402 1.93283 1.55993
1.93497 1.72035 1.93301 1.62592 1.77293 1.79858 0.92777 0.90998
0.93517 0.93018 0.91438 0.81242 0.94668 0.91404 0.93242 0.86443
0.88955 0.80911 0.82087
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.31 7.61 71.98 0.55 -2.76 16
2 C 0.15 3.85 3.49 44.98 0.16 4.01 16
3 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16
4 C -0.12 -3.80 4.84 30.67 0.15 -3.66 16
5 C 0.18 6.18 2.73 45.02 0.12 6.31 16
6 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16
7 N -0.75 -35.63 5.12 -322.81 -1.65 -37.29 16
8 C -0.32 -17.20 9.93 84.03 0.83 -16.37 16
9 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16
10 C -0.11 -6.04 5.50 84.86 0.47 -5.57 16
11 N -0.98 -60.43 13.70 21.65 0.30 -60.13 16
12 Si 1.13 50.19 29.92 68.60 2.05 52.24 16
13 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16
14 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16
15 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16
16 C -0.14 -4.01 5.66 30.67 0.17 -3.84 16
17 C 0.11 1.97 6.35 86.36 0.55 2.51 16
18 N -0.60 -12.91 2.97 -795.02 -2.36 -15.28 16
19 C 0.52 11.36 7.27 87.66 0.64 11.99 16
20 O -0.55 -15.74 10.40 -3.04 -0.03 -15.77 16
21 C -0.20 -2.74 3.41 29.85 0.10 -2.63 16
22 C 0.28 5.06 1.20 30.60 0.04 5.09 16
23 F -0.17 -3.93 16.10 44.97 0.72 -3.21 16
24 F -0.16 -3.54 16.11 44.97 0.72 -2.82 16
25 C 0.44 6.62 2.65 71.98 0.19 6.81 16
26 F -0.15 -2.22 16.78 44.97 0.75 -1.47 16
27 F -0.17 -2.98 17.28 44.97 0.78 -2.21 16
28 F -0.15 -1.92 16.78 44.97 0.75 -1.16 16
29 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16
30 H 0.07 1.97 6.58 -2.39 -0.02 1.95 16
31 H 0.05 1.38 6.92 -2.39 -0.02 1.36 16
32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
34 H 0.36 18.19 6.63 -92.71 -0.61 17.57 16
35 H 0.24 14.97 6.78 -92.71 -0.63 14.34 16
36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
38 H 0.12 1.21 5.93 -2.39 -0.01 1.19 16
39 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16
40 H 0.17 1.12 7.37 -2.39 -0.02 1.10 16
41 H 0.16 1.55 7.58 -2.39 -0.02 1.53 16
Total: -1.00 -69.98 347.79 6.62 -63.36
By element:
Atomic # 1 Polarization: 21.21 SS G_CDS: 0.62 Total: 21.83 kcal
Atomic # 6 Polarization: -2.06 SS G_CDS: 3.97 Total: 1.90 kcal
Atomic # 7 Polarization: -108.98 SS G_CDS: -3.72 Total: -112.70 kcal
Atomic # 8 Polarization: -15.74 SS G_CDS: -0.03 Total: -15.77 kcal
Atomic # 9 Polarization: -14.60 SS G_CDS: 3.73 Total: -10.86 kcal
Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.24 kcal
Total: -69.98 6.62 -63.36 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754603711.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -212.116 kcal
(2) G-P(sol) polarization free energy of solvation -69.978 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.358 kcal
(6) G-S(sol) free energy of system = (1) + (5) -275.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds