Wall clock time and date at job start Sat Apr 11 2020 07:04:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.42897 * 113.99811 * 2 1
4 4 C 1.52997 * 109.47094 * 179.97438 * 3 2 1
5 5 N 1.46501 * 109.47110 * 65.00136 * 4 3 2
6 6 C 1.46493 * 120.00419 * 270.00250 * 5 4 3
7 7 C 1.50697 * 109.47301 * 269.99843 * 6 5 4
8 8 H 1.08004 * 120.00041 * 359.97438 * 7 6 5
9 9 C 1.37879 * 120.00310 * 180.02562 * 7 6 5
10 10 N 1.31521 * 119.99855 * 359.97438 * 9 7 6
11 11 Si 1.86803 * 120.00047 * 180.02562 * 9 7 6
12 12 H 1.48494 * 109.47064 * 59.99837 * 11 9 7
13 13 H 1.48503 * 109.46832 * 179.97438 * 11 9 7
14 14 H 1.48495 * 109.46923 * 299.99298 * 11 9 7
15 15 C 1.34783 * 119.99555 * 89.99640 * 5 4 3
16 16 O 1.21594 * 119.99748 * 179.97438 * 15 5 4
17 17 N 1.34769 * 120.00093 * 0.28081 * 15 5 4
18 18 C 1.40143 * 120.00005 * 174.35988 * 17 15 5
19 19 C 1.38828 * 119.99641 * 326.56181 * 18 17 15
20 20 C 1.38322 * 119.99552 * 179.72024 * 19 18 17
21 21 F 1.35095 * 120.00193 * 180.27067 * 20 19 18
22 22 C 1.38829 * 119.99948 * 0.55368 * 20 19 18
23 23 O 1.36080 * 119.99978 * 179.70319 * 22 20 19
24 24 C 1.42904 * 117.00037 * 270.01352 * 23 22 20
25 25 C 1.38830 * 119.99746 * 359.71604 * 22 20 19
26 26 F 1.35102 * 119.99463 * 179.97438 * 25 22 20
27 27 C 1.38313 * 120.00151 * 0.02562 * 25 22 20
28 28 H 1.08992 * 109.46750 * 179.97438 * 1 2 3
29 29 H 1.08993 * 109.46770 * 299.99768 * 1 2 3
30 30 H 1.08999 * 109.46661 * 59.99929 * 1 2 3
31 31 H 1.09003 * 109.47214 * 60.00144 * 3 2 1
32 32 H 1.09001 * 109.47641 * 300.00195 * 3 2 1
33 33 H 1.09003 * 109.47427 * 305.00723 * 4 3 2
34 34 H 1.09002 * 109.47747 * 185.00129 * 4 3 2
35 35 H 1.09005 * 109.47271 * 29.99725 * 6 5 4
36 36 H 1.09006 * 109.47650 * 149.99326 * 6 5 4
37 37 H 0.96996 * 119.99454 * 180.02562 * 10 9 7
38 38 H 0.96997 * 120.00219 * 354.36455 * 17 15 5
39 39 H 1.08000 * 120.00348 * 359.97438 * 19 18 17
40 40 H 1.09000 * 109.47152 * 179.97438 * 24 23 22
41 41 H 1.08992 * 109.47465 * 300.00401 * 24 23 22
42 42 H 1.09005 * 109.46466 * 60.00179 * 24 23 22
43 43 H 1.08000 * 120.00065 * 179.97438 * 27 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5354 1.1847 0.0006
5 7 3.9767 0.5640 -1.2509
6 6 4.1063 -0.8924 -1.3404
7 6 5.5017 -1.2981 -0.9414
8 1 6.2203 -0.5461 -0.6506
9 6 5.8614 -2.6291 -0.9486
10 7 4.9865 -3.5448 -1.3032
11 14 7.5909 -3.1319 -0.4532
12 1 7.8522 -2.6971 0.9424
13 1 7.7223 -4.6083 -0.5441
14 1 8.5729 -2.4901 -1.3638
15 6 4.2633 1.3331 -2.3200
16 8 4.6300 0.8181 -3.3587
17 7 4.1494 2.6734 -2.2360
18 6 4.5592 3.4799 -3.3062
19 6 5.6379 3.0961 -4.0913
20 6 6.0388 3.8893 -5.1512
21 9 7.0851 3.5131 -5.9186
22 6 5.3696 5.0749 -5.4229
23 8 5.7677 5.8582 -6.4619
24 6 6.7509 6.8568 -6.1820
25 6 4.2943 5.4614 -4.6343
26 9 3.6434 6.6155 -4.8984
27 6 3.8902 4.6656 -3.5778
28 1 -0.3632 -1.0276 -0.0005
29 1 -0.3632 0.5138 0.8900
30 1 -0.3632 0.5139 -0.8900
31 1 1.6886 1.8464 0.8900
32 1 1.6886 1.8464 -0.8899
33 1 3.8508 0.5684 0.8426
34 1 3.9785 2.1765 0.0902
35 1 3.3858 -1.3632 -0.6715
36 1 3.9138 -1.2121 -2.3646
37 1 5.2395 -4.4812 -1.3078
38 1 3.7838 3.0797 -1.4347
39 1 6.1616 2.1761 -3.8770
40 1 6.9784 7.4085 -7.0942
41 1 6.3668 7.5436 -5.4279
42 1 7.6578 6.3796 -5.8106
43 1 3.0540 4.9665 -2.9641
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000078501245.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:50
Heat of formation + Delta-G solvation = -153.901244 kcal
Electronic energy + Delta-G solvation = -30580.968879 eV
Core-core repulsion = 25878.123205 eV
Total energy + Delta-G solvation = -4702.845674 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.138 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-49.14326 -48.96728 -40.55375 -39.28741 -37.95191 -37.33465 -35.04504 -34.24415
-32.59367 -30.49827 -29.73854 -29.47171 -27.34295 -26.57350 -26.00025 -23.60662
-23.23672 -22.86725 -22.06472 -19.81521 -18.75891 -18.10432 -17.72776 -17.34158
-16.56202 -16.49627 -16.31188 -16.05980 -15.76079 -15.47974 -15.38378 -15.13593
-15.01685 -14.85686 -14.76141 -14.65397 -14.19283 -14.04527 -13.47534 -13.07568
-12.91085 -12.53309 -12.38692 -12.29445 -12.03911 -11.99705 -11.78457 -11.71681
-11.30310 -10.97209 -10.91843 -10.47063 -10.28772 -10.17130 -10.08688 -9.70118
-9.55697 -9.46733 -8.87724 -8.39684 -8.24303 -7.74208 -6.01328 -4.06102
0.71239 0.84481 2.75712 2.97525 3.32999 3.37944 3.40458 3.44458
3.69130 3.78917 3.93308 4.15582 4.27022 4.47357 4.65232 4.89269
5.00772 5.04734 5.10262 5.15375 5.26255 5.31030 5.31802 5.33357
5.40589 5.44993 5.45457 5.47376 5.67800 5.75065 5.79260 6.00119
6.07438 6.25224 6.65028 6.69441 7.17839 7.29282 7.41458 7.48635
7.58323 7.95437 8.25258 8.42093 8.90389 9.06370 9.58098 11.06558
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.010498 B = 0.003398 C = 0.002685
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2666.421542 B = 8238.862529 C =10424.619404
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.369 6.369
3 C 0.041 3.959
4 C 0.108 3.892
5 N -0.593 5.593
6 C 0.264 3.736
7 C -0.530 4.530
8 H 0.055 0.945
9 C 0.063 3.937
10 N -0.892 5.892
11 Si 0.896 3.104
12 H -0.278 1.278
13 H -0.286 1.286
14 H -0.277 1.277
15 C 0.694 3.306
16 O -0.559 6.559
17 N -0.693 5.693
18 C 0.242 3.758
19 C -0.157 4.157
20 C 0.138 3.862
21 F -0.120 7.120
22 C -0.007 4.007
23 O -0.318 6.318
24 C 0.030 3.970
25 C 0.134 3.866
26 F -0.125 7.125
27 C -0.194 4.194
28 H 0.085 0.915
29 H 0.035 0.965
30 H 0.036 0.964
31 H 0.054 0.946
32 H 0.044 0.956
33 H 0.100 0.900
34 H 0.076 0.924
35 H 0.050 0.950
36 H 0.042 0.958
37 H 0.263 0.737
38 H 0.405 0.595
39 H 0.166 0.834
40 H 0.097 0.903
41 H 0.048 0.952
42 H 0.049 0.951
43 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.675 20.014 0.434 20.558
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.287 6.287
3 C -0.037 4.037
4 C -0.017 4.017
5 N -0.326 5.326
6 C 0.145 3.855
7 C -0.569 4.569
8 H 0.074 0.926
9 C -0.139 4.139
10 N -0.531 5.531
11 Si 0.724 3.276
12 H -0.203 1.203
13 H -0.212 1.212
14 H -0.202 1.202
15 C 0.396 3.604
16 O -0.434 6.434
17 N -0.343 5.343
18 C 0.144 3.856
19 C -0.178 4.178
20 C 0.118 3.882
21 F -0.099 7.099
22 C -0.053 4.053
23 O -0.234 6.234
24 C -0.065 4.065
25 C 0.113 3.887
26 F -0.103 7.103
27 C -0.216 4.216
28 H 0.104 0.896
29 H 0.054 0.946
30 H 0.055 0.945
31 H 0.072 0.928
32 H 0.062 0.938
33 H 0.118 0.882
34 H 0.094 0.906
35 H 0.067 0.933
36 H 0.060 0.940
37 H 0.073 0.927
38 H 0.243 0.757
39 H 0.184 0.816
40 H 0.116 0.884
41 H 0.066 0.934
42 H 0.068 0.932
43 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -4.372 19.110 -0.480 19.610
hybrid contribution 0.636 0.329 0.740 1.029
sum -3.737 19.439 0.260 19.797
Atomic orbital electron populations
1.22715 0.81826 1.02768 0.99160 1.88108 1.18884 1.26548 1.95134
1.23131 0.95140 0.85834 0.99610 1.21533 0.91348 0.98719 0.90070
1.47607 1.67019 1.09669 1.08336 1.19331 0.96871 0.70118 0.99196
1.21418 0.97441 0.92243 1.45820 0.92641 1.24901 0.97364 0.96375
0.95276 1.69931 1.34373 1.01079 1.47685 0.86592 0.84741 0.77365
0.78884 1.20327 1.21207 1.20247 1.15997 0.79543 0.79717 0.85133
1.90949 1.52177 1.71598 1.28685 1.43132 1.67306 1.05918 1.17897
1.16815 0.90764 0.89329 0.88729 1.21323 0.97992 1.02561 0.95960
1.17433 0.86318 0.93554 0.90933 1.91533 1.54091 1.90831 1.73398
1.18403 0.98346 0.93563 0.95031 1.86186 1.59358 1.47621 1.30268
1.23110 0.90582 0.90119 1.02659 1.17172 0.92989 0.83686 0.94831
1.91513 1.79574 1.45892 1.93317 1.20661 1.03585 0.96974 1.00406
0.89625 0.94600 0.94546 0.92825 0.93794 0.88188 0.90603 0.93255
0.94008 0.92691 0.75721 0.81614 0.88438 0.93376 0.93238 0.83431
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 11.01 101.05 1.11 1.49 16
2 O -0.37 -5.86 9.53 -35.23 -0.34 -6.20 16
3 C 0.04 0.51 6.28 37.16 0.23 0.75 16
4 C 0.11 1.55 5.54 -4.04 -0.02 1.52 16
5 N -0.59 -11.71 2.42 -180.80 -0.44 -12.15 16
6 C 0.26 6.70 4.98 -5.20 -0.03 6.68 16
7 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16
8 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16
9 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16
10 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16
11 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16
12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
15 C 0.69 13.56 8.02 -86.92 -0.70 12.86 16
16 O -0.56 -13.44 13.62 5.28 0.07 -13.37 16
17 N -0.69 -9.71 5.18 -14.19 -0.07 -9.79 16
18 C 0.24 3.35 6.28 -83.62 -0.53 2.83 16
19 C -0.16 -2.47 8.63 -39.33 -0.34 -2.81 16
20 C 0.14 2.07 7.30 -39.33 -0.29 1.78 16
21 F -0.12 -1.89 17.11 2.25 0.04 -1.85 16
22 C -0.01 -0.09 5.74 -39.14 -0.22 -0.32 16
23 O -0.32 -4.27 10.14 -19.99 -0.20 -4.47 16
24 C 0.03 0.28 11.13 101.05 1.13 1.40 16
25 C 0.13 1.66 7.30 -39.34 -0.29 1.37 16
26 F -0.12 -1.51 17.11 2.25 0.04 -1.47 16
27 C -0.19 -2.19 9.93 -39.34 -0.39 -2.58 16
28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16
29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
30 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16
31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16
33 H 0.10 1.55 8.07 -51.93 -0.42 1.13 16
34 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16
35 H 0.05 1.31 7.12 -51.93 -0.37 0.94 16
36 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16
37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
38 H 0.41 4.12 6.63 -40.82 -0.27 3.85 16
39 H 0.17 3.06 6.42 -52.49 -0.34 2.73 16
40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16
LS Contribution 377.63 15.07 5.69 5.69
Total: -1.00 -34.28 377.63 -5.71 -39.99
By element:
Atomic # 1 Polarization: 6.37 SS G_CDS: -5.47 Total: 0.90 kcal
Atomic # 6 Polarization: 12.44 SS G_CDS: -0.75 Total: 11.69 kcal
Atomic # 7 Polarization: -47.77 SS G_CDS: 0.23 Total: -47.54 kcal
Atomic # 8 Polarization: -23.57 SS G_CDS: -0.47 Total: -24.03 kcal
Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.32 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -34.28 -5.71 -39.99 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000078501245.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -113.914 kcal
(2) G-P(sol) polarization free energy of solvation -34.279 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal
(6) G-S(sol) free energy of system = (1) + (5) -153.901 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds