Wall clock time and date at job start Sat Apr 11 2020 07:04:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.42897 * 113.99811 * 2 1
4 4 C 1.52997 * 109.47094 * 179.97438 * 3 2 1
5 5 N 1.46501 * 109.47110 * 65.00136 * 4 3 2
6 6 C 1.46493 * 120.00419 * 270.00250 * 5 4 3
7 7 C 1.50697 * 109.47301 * 269.99843 * 6 5 4
8 8 H 1.08004 * 120.00041 * 359.97438 * 7 6 5
9 9 C 1.37879 * 120.00310 * 180.02562 * 7 6 5
10 10 N 1.31521 * 119.99855 * 359.97438 * 9 7 6
11 11 Si 1.86803 * 120.00047 * 180.02562 * 9 7 6
12 12 H 1.48494 * 109.47064 * 59.99837 * 11 9 7
13 13 H 1.48503 * 109.46832 * 179.97438 * 11 9 7
14 14 H 1.48495 * 109.46923 * 299.99298 * 11 9 7
15 15 C 1.34783 * 119.99555 * 89.99640 * 5 4 3
16 16 O 1.21594 * 119.99748 * 179.97438 * 15 5 4
17 17 N 1.34769 * 120.00093 * 0.28081 * 15 5 4
18 18 C 1.40143 * 120.00005 * 174.35988 * 17 15 5
19 19 C 1.38828 * 119.99641 * 326.56181 * 18 17 15
20 20 C 1.38322 * 119.99552 * 179.72024 * 19 18 17
21 21 F 1.35095 * 120.00193 * 180.27067 * 20 19 18
22 22 C 1.38829 * 119.99948 * 0.55368 * 20 19 18
23 23 O 1.36080 * 119.99978 * 179.70319 * 22 20 19
24 24 C 1.42904 * 117.00037 * 270.01352 * 23 22 20
25 25 C 1.38830 * 119.99746 * 359.71604 * 22 20 19
26 26 F 1.35102 * 119.99463 * 179.97438 * 25 22 20
27 27 C 1.38313 * 120.00151 * 0.02562 * 25 22 20
28 28 H 1.08992 * 109.46750 * 179.97438 * 1 2 3
29 29 H 1.08993 * 109.46770 * 299.99768 * 1 2 3
30 30 H 1.08999 * 109.46661 * 59.99929 * 1 2 3
31 31 H 1.09003 * 109.47214 * 60.00144 * 3 2 1
32 32 H 1.09001 * 109.47641 * 300.00195 * 3 2 1
33 33 H 1.09003 * 109.47427 * 305.00723 * 4 3 2
34 34 H 1.09002 * 109.47747 * 185.00129 * 4 3 2
35 35 H 1.09005 * 109.47271 * 29.99725 * 6 5 4
36 36 H 1.09006 * 109.47650 * 149.99326 * 6 5 4
37 37 H 0.96996 * 119.99454 * 180.02562 * 10 9 7
38 38 H 0.96997 * 120.00219 * 354.36455 * 17 15 5
39 39 H 1.08000 * 120.00348 * 359.97438 * 19 18 17
40 40 H 1.09000 * 109.47152 * 179.97438 * 24 23 22
41 41 H 1.08992 * 109.47465 * 300.00401 * 24 23 22
42 42 H 1.09005 * 109.46466 * 60.00179 * 24 23 22
43 43 H 1.08000 * 120.00065 * 179.97438 * 27 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5354 1.1847 0.0006
5 7 3.9767 0.5640 -1.2509
6 6 4.1063 -0.8924 -1.3404
7 6 5.5017 -1.2981 -0.9414
8 1 6.2203 -0.5461 -0.6506
9 6 5.8614 -2.6291 -0.9486
10 7 4.9865 -3.5448 -1.3032
11 14 7.5909 -3.1319 -0.4532
12 1 7.8522 -2.6971 0.9424
13 1 7.7223 -4.6083 -0.5441
14 1 8.5729 -2.4901 -1.3638
15 6 4.2633 1.3331 -2.3200
16 8 4.6300 0.8181 -3.3587
17 7 4.1494 2.6734 -2.2360
18 6 4.5592 3.4799 -3.3062
19 6 5.6379 3.0961 -4.0913
20 6 6.0388 3.8893 -5.1512
21 9 7.0851 3.5131 -5.9186
22 6 5.3696 5.0749 -5.4229
23 8 5.7677 5.8582 -6.4619
24 6 6.7509 6.8568 -6.1820
25 6 4.2943 5.4614 -4.6343
26 9 3.6434 6.6155 -4.8984
27 6 3.8902 4.6656 -3.5778
28 1 -0.3632 -1.0276 -0.0005
29 1 -0.3632 0.5138 0.8900
30 1 -0.3632 0.5139 -0.8900
31 1 1.6886 1.8464 0.8900
32 1 1.6886 1.8464 -0.8899
33 1 3.8508 0.5684 0.8426
34 1 3.9785 2.1765 0.0902
35 1 3.3858 -1.3632 -0.6715
36 1 3.9138 -1.2121 -2.3646
37 1 5.2395 -4.4812 -1.3078
38 1 3.7838 3.0797 -1.4347
39 1 6.1616 2.1761 -3.8770
40 1 6.9784 7.4085 -7.0942
41 1 6.3668 7.5436 -5.4279
42 1 7.6578 6.3796 -5.8106
43 1 3.0540 4.9665 -2.9641
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000078501245.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:49
Heat of formation + Delta-G solvation = -177.491951 kcal
Electronic energy + Delta-G solvation = -30581.991848 eV
Core-core repulsion = 25878.123205 eV
Total energy + Delta-G solvation = -4703.868643 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.138 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-50.16332 -50.10892 -41.88899 -40.42090 -39.03610 -38.49086 -36.60015 -35.62902
-34.57232 -31.58365 -31.11858 -30.59762 -28.86112 -27.64041 -27.08621 -25.21584
-24.40373 -24.10551 -23.37971 -21.19873 -19.95200 -19.20547 -18.93947 -18.65343
-18.40584 -17.59669 -17.50934 -17.15668 -16.97831 -16.63183 -16.54258 -16.45934
-16.23116 -16.14311 -15.90155 -15.68162 -15.55098 -15.42885 -14.88921 -14.39423
-14.11497 -13.92858 -13.68252 -13.42238 -13.34324 -13.12769 -13.05654 -12.85957
-12.74652 -12.64677 -12.53039 -12.15564 -11.95381 -11.69946 -11.33076 -11.25202
-11.09878 -10.59326 -10.51375 -9.96725 -9.60601 -9.19871 -8.16622 -6.30876
-0.36815 -0.22878 1.37935 1.42341 1.44570 1.50961 1.84211 2.26214
2.38710 2.47597 2.69235 2.92789 2.97865 3.13772 3.18321 3.65657
3.82763 3.92682 4.14843 4.25875 4.34189 4.35315 4.36867 4.40122
4.46860 4.56005 4.58447 4.60417 4.69113 4.70858 4.89631 4.92911
4.95842 5.06475 5.13833 5.32568 5.52887 5.56920 5.80758 6.01284
6.11827 6.20115 6.38068 6.78603 6.98565 7.34230 7.54917 8.89980
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.010498 B = 0.003398 C = 0.002685
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2666.421542 B = 8238.862529 C =10424.619404
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.416 6.416
3 C 0.041 3.959
4 C 0.100 3.900
5 N -0.599 5.599
6 C 0.288 3.712
7 C -0.543 4.543
8 H 0.055 0.945
9 C 0.008 3.992
10 N -0.928 5.928
11 Si 0.964 3.036
12 H -0.259 1.259
13 H -0.281 1.281
14 H -0.279 1.279
15 C 0.694 3.306
16 O -0.614 6.614
17 N -0.668 5.668
18 C 0.229 3.771
19 C -0.171 4.171
20 C 0.121 3.879
21 F -0.132 7.132
22 C 0.000 4.000
23 O -0.338 6.338
24 C 0.023 3.977
25 C 0.137 3.863
26 F -0.117 7.117
27 C -0.158 4.158
28 H 0.078 0.922
29 H 0.063 0.937
30 H 0.043 0.957
31 H 0.097 0.903
32 H 0.054 0.946
33 H 0.085 0.915
34 H 0.123 0.877
35 H 0.034 0.966
36 H -0.009 1.009
37 H 0.265 0.735
38 H 0.428 0.572
39 H 0.131 0.869
40 H 0.121 0.879
41 H 0.062 0.938
42 H 0.049 0.951
43 H 0.191 0.809
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.289 23.262 1.991 23.939
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.336 6.336
3 C -0.036 4.036
4 C -0.022 4.022
5 N -0.332 5.332
6 C 0.167 3.833
7 C -0.581 4.581
8 H 0.073 0.927
9 C -0.191 4.191
10 N -0.567 5.567
11 Si 0.788 3.212
12 H -0.184 1.184
13 H -0.206 1.206
14 H -0.205 1.205
15 C 0.396 3.604
16 O -0.494 6.494
17 N -0.319 5.319
18 C 0.131 3.869
19 C -0.193 4.193
20 C 0.100 3.900
21 F -0.111 7.111
22 C -0.047 4.047
23 O -0.255 6.255
24 C -0.070 4.070
25 C 0.116 3.884
26 F -0.095 7.095
27 C -0.180 4.180
28 H 0.097 0.903
29 H 0.082 0.918
30 H 0.062 0.938
31 H 0.115 0.885
32 H 0.072 0.928
33 H 0.103 0.897
34 H 0.140 0.860
35 H 0.052 0.948
36 H 0.009 0.991
37 H 0.074 0.926
38 H 0.269 0.731
39 H 0.149 0.851
40 H 0.139 0.861
41 H 0.080 0.920
42 H 0.068 0.932
43 H 0.208 0.792
Dipole moment (debyes) X Y Z Total
from point charges -5.011 22.450 1.131 23.031
hybrid contribution 0.796 -0.555 0.190 0.989
sum -4.215 21.895 1.320 22.336
Atomic orbital electron populations
1.22840 0.80060 1.03014 1.00808 1.88049 1.21075 1.28907 1.95531
1.23242 0.93205 0.85050 1.02092 1.21936 0.93403 1.00160 0.86745
1.47365 1.67452 1.07805 1.10563 1.18605 0.95502 0.73792 0.95443
1.21749 0.98381 0.92539 1.45468 0.92676 1.25812 1.01549 0.96480
0.95216 1.70065 1.36501 1.01404 1.48773 0.85530 0.79363 0.77077
0.79190 1.18392 1.20621 1.20503 1.16094 0.78910 0.81286 0.84144
1.90920 1.54402 1.73206 1.30824 1.42593 1.66711 1.03666 1.18949
1.16848 0.90887 0.90308 0.88820 1.21128 0.99175 1.01710 0.97278
1.17491 0.86858 0.94413 0.91218 1.91492 1.54733 1.91097 1.73748
1.18498 0.98325 0.93042 0.94798 1.86138 1.60384 1.48333 1.30639
1.23376 0.89712 0.89476 1.04482 1.17125 0.92495 0.83998 0.94783
1.91540 1.79281 1.45447 1.93279 1.20881 1.03064 0.94570 0.99459
0.90309 0.91824 0.93841 0.88498 0.92757 0.89701 0.85971 0.94804
0.99090 0.92583 0.73052 0.85148 0.86107 0.91969 0.93228 0.79153
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.64 11.01 113.37 1.25 1.89 16
2 O -0.42 -12.98 9.53 -148.98 -1.42 -14.40 16
3 C 0.04 0.92 6.28 71.98 0.45 1.37 16
4 C 0.10 2.69 5.54 86.38 0.48 3.17 16
5 N -0.60 -24.02 2.42 -844.19 -2.04 -26.07 16
6 C 0.29 15.42 4.98 85.63 0.43 15.85 16
7 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16
8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16
9 C 0.01 0.48 5.46 84.65 0.46 0.95 16
10 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16
11 Si 0.96 45.13 29.54 68.60 2.03 47.15 16
12 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16
13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
15 C 0.69 27.49 8.02 179.05 1.44 28.93 16
16 O -0.61 -31.19 13.62 -4.01 -0.05 -31.25 16
17 N -0.67 -17.52 5.18 -317.08 -1.64 -19.16 16
18 C 0.23 5.99 6.28 38.09 0.24 6.23 16
19 C -0.17 -5.55 8.63 22.43 0.19 -5.36 16
20 C 0.12 3.68 7.30 22.43 0.16 3.84 16
21 F -0.13 -4.35 17.11 44.97 0.77 -3.58 16
22 C 0.00 0.00 5.74 22.55 0.13 0.13 16
23 O -0.34 -8.60 10.14 -94.45 -0.96 -9.56 16
24 C 0.02 0.39 11.13 113.37 1.26 1.65 16
25 C 0.14 2.99 7.30 22.43 0.16 3.15 16
26 F -0.12 -2.41 17.11 44.97 0.77 -1.64 16
27 C -0.16 -2.99 9.93 22.43 0.22 -2.76 16
28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16
31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
33 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16
34 H 0.12 2.07 6.44 -2.39 -0.02 2.05 16
35 H 0.03 1.90 7.12 -2.38 -0.02 1.88 16
36 H -0.01 -0.57 7.42 -2.38 -0.02 -0.59 16
37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16
38 H 0.43 7.04 6.63 -92.71 -0.61 6.42 16
39 H 0.13 5.22 6.42 -2.91 -0.02 5.20 16
40 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16
41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
42 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16
43 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16
Total: -1.00 -80.93 377.63 5.30 -75.63
By element:
Atomic # 1 Polarization: 10.62 SS G_CDS: 0.45 Total: 11.07 kcal
Atomic # 6 Polarization: 21.15 SS G_CDS: 7.12 Total: 28.27 kcal
Atomic # 7 Polarization: -98.30 SS G_CDS: -3.40 Total: -101.70 kcal
Atomic # 8 Polarization: -52.78 SS G_CDS: -2.43 Total: -55.21 kcal
Atomic # 9 Polarization: -6.75 SS G_CDS: 1.54 Total: -5.22 kcal
Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal
Total: -80.93 5.30 -75.63 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000078501245.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -101.859 kcal
(2) G-P(sol) polarization free energy of solvation -80.929 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.789 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) -177.492 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds