Wall clock time and date at job start Sat Apr 11 2020 07:04:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86801 * 119.99980 * 2 1
4 4 H 1.48499 * 109.47522 * 270.00386 * 3 2 1
5 5 H 1.48504 * 109.47006 * 30.00333 * 3 2 1
6 6 H 1.48498 * 109.47233 * 150.00089 * 3 2 1
7 7 C 1.37877 * 120.00309 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00026 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99887 * 359.97438 * 7 2 1
10 10 N 1.46492 * 109.47331 * 179.97438 * 9 7 2
11 11 C 1.34961 * 125.97210 * 124.99805 * 10 9 7
12 12 C 1.35245 * 107.86421 * 180.02562 * 11 10 9
13 13 C 1.40427 * 107.86130 * 359.97438 * 12 11 10
14 14 N 1.39995 * 125.97635 * 179.97438 * 13 12 11
15 15 C 1.46497 * 120.00057 * 359.97438 * 14 13 12
16 16 H 1.09012 * 110.42926 * 36.09047 * 15 14 13
17 17 C 1.54625 * 110.48774 * 158.77327 * 15 14 13
18 18 C 1.54658 * 101.68373 * 93.67022 * 17 15 14
19 19 N 1.46758 * 105.38113 * 25.76864 * 18 17 15
20 20 C 1.40049 * 124.34780 * 162.85861 * 19 18 17
21 21 C 1.38811 * 120.07677 * 269.72435 * 20 19 18
22 22 C 1.38137 * 119.95663 * 180.02562 * 21 20 19
23 23 C 1.38285 * 120.11231 * 359.95261 * 22 21 20
24 24 C 1.38266 * 120.15512 * 0.02562 * 23 22 21
25 25 C 1.38315 * 120.04663 * 359.97438 * 24 23 22
26 26 F 1.35101 * 120.05830 * 179.72783 * 25 24 23
27 27 C 1.34419 * 111.30146 * 342.58593 * 19 18 17
28 28 O 1.21295 * 124.93737 * 180.69221 * 27 19 18
29 29 N 1.31223 * 108.04865 * 0.24821 * 13 12 11
30 30 H 0.97002 * 120.00026 * 359.97438 * 1 2 3
31 31 H 1.08998 * 109.46909 * 59.99745 * 9 7 2
32 32 H 1.09003 * 109.46678 * 300.00086 * 9 7 2
33 33 H 1.08004 * 126.06811 * 0.02562 * 11 10 9
34 34 H 1.07999 * 126.07184 * 179.97438 * 12 11 10
35 35 H 0.96998 * 120.00054 * 180.02562 * 14 13 12
36 36 H 1.09002 * 110.97056 * 212.00434 * 17 15 14
37 37 H 1.08998 * 110.96891 * 335.72735 * 17 15 14
38 38 H 1.08997 * 110.39483 * 266.74008 * 18 17 15
39 39 H 1.09000 * 110.17807 * 144.68579 * 18 17 15
40 40 H 1.08006 * 120.02101 * 0.03689 * 21 20 19
41 41 H 1.08001 * 119.94854 * 179.97438 * 22 21 20
42 42 H 1.07998 * 119.92464 * 180.02562 * 23 22 21
43 43 H 1.08002 * 119.97869 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0466 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 7 2.2031 -3.6126 -0.0018
11 6 2.2427 -4.6227 0.8925
12 6 3.2614 -5.4426 0.5473
13 6 3.8686 -4.9142 -0.6034
14 7 4.9632 -5.4635 -1.2816
15 6 5.5785 -6.7018 -0.7977
16 1 4.8186 -7.3732 -0.3975
17 6 6.3709 -7.3917 -1.9322
18 6 7.7948 -6.8324 -1.7046
19 7 7.8543 -6.4875 -0.2794
20 6 9.0409 -6.2727 0.4328
21 6 9.6701 -7.3321 1.0720
22 6 10.8402 -7.1174 1.7741
23 6 11.3865 -5.8488 1.8406
24 6 10.7639 -4.7902 1.2053
25 6 9.5921 -4.9979 0.5004
26 9 8.9806 -3.9628 -0.1158
27 6 6.6234 -6.3984 0.2533
28 8 6.3852 -6.1156 1.4085
29 7 3.2343 -3.8124 -0.9283
30 1 -0.4850 0.8401 0.0004
31 1 0.6241 -2.5567 -0.8903
32 1 0.6248 -2.5570 0.8897
33 1 1.5788 -4.7530 1.7343
34 1 3.5557 -6.3437 1.0648
35 1 5.3147 -5.0238 -2.0715
36 1 6.3506 -8.4756 -1.8190
37 1 5.9897 -7.0964 -2.9097
38 1 7.9559 -5.9437 -2.3148
39 1 8.5395 -7.5927 -1.9402
40 1 9.2452 -8.3237 1.0202
41 1 11.3294 -7.9417 2.2718
42 1 12.3016 -5.6844 2.3901
43 1 11.1928 -3.8005 1.2595
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000086154393.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:53
Heat of formation + Delta-G solvation = 50.056768 kcal
Electronic energy + Delta-G solvation = -29262.521849 eV
Core-core repulsion = 25031.582434 eV
Total energy + Delta-G solvation = -4230.939415 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.139 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-49.05180 -41.06103 -40.05267 -38.92256 -36.63647 -35.32445 -33.44627 -32.30536
-30.99243 -30.46804 -29.30591 -28.83840 -27.06864 -26.16530 -23.66596 -23.07388
-22.84720 -22.10763 -20.38831 -19.90900 -19.49579 -18.05273 -17.34746 -17.09190
-16.55206 -16.47495 -16.21298 -15.71068 -15.51563 -15.27964 -15.07962 -14.53873
-14.44363 -14.20802 -13.92837 -13.78400 -13.67319 -13.34713 -13.05517 -12.71157
-12.60459 -12.30782 -12.26782 -12.11371 -11.87696 -11.68806 -11.62097 -11.53654
-10.95303 -10.80084 -10.52289 -10.16035 -9.84102 -9.57002 -9.37834 -9.20195
-9.16731 -8.96081 -8.54201 -7.84492 -7.02333 -6.15587 -4.19937 0.69025
0.81908 2.30271 2.61729 2.99744 3.14568 3.29847 3.33170 3.34971
3.42726 3.77655 3.92832 4.11011 4.21705 4.31847 4.40657 4.41839
4.53272 4.57837 4.71835 4.85031 4.94417 5.04215 5.19040 5.22538
5.33490 5.48752 5.52594 5.61931 5.62912 5.72302 5.86121 5.96347
6.04609 6.19099 6.36928 6.57141 6.63248 6.81685 6.87135 7.07575
7.21365 7.60534 7.79990 7.95849 8.06360 8.16986 8.21584 8.84400
8.96826 9.45290 10.92744
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.012911 B = 0.002803 C = 0.002482
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2168.135621 B = 9986.377332 C =11280.152021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.061 3.939
3 Si 0.906 3.094
4 H -0.278 1.278
5 H -0.285 1.285
6 H -0.273 1.273
7 C -0.524 4.524
8 H 0.068 0.932
9 C 0.261 3.739
10 N -0.327 5.327
11 C 0.065 3.935
12 C -0.317 4.317
13 C 0.300 3.700
14 N -0.706 5.706
15 C 0.152 3.848
16 H 0.115 0.885
17 C -0.139 4.139
18 C 0.106 3.894
19 N -0.584 5.584
20 C 0.113 3.887
21 C -0.083 4.083
22 C -0.126 4.126
23 C -0.087 4.087
24 C -0.150 4.150
25 C 0.108 3.892
26 F -0.128 7.128
27 C 0.505 3.495
28 O -0.496 6.496
29 N -0.327 5.327
30 H 0.266 0.734
31 H 0.043 0.957
32 H 0.054 0.946
33 H 0.163 0.837
34 H 0.131 0.869
35 H 0.403 0.597
36 H 0.099 0.901
37 H 0.104 0.896
38 H 0.075 0.925
39 H 0.083 0.917
40 H 0.135 0.865
41 H 0.134 0.866
42 H 0.136 0.864
43 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.673 -20.014 -1.503 29.538
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.141 4.141
3 Si 0.734 3.266
4 H -0.204 1.204
5 H -0.210 1.210
6 H -0.197 1.197
7 C -0.562 4.562
8 H 0.086 0.914
9 C 0.143 3.857
10 N -0.107 5.107
11 C -0.087 4.087
12 C -0.350 4.350
13 C 0.045 3.955
14 N -0.350 5.350
15 C 0.040 3.960
16 H 0.132 0.868
17 C -0.177 4.177
18 C -0.016 4.016
19 N -0.317 5.317
20 C 0.022 3.978
21 C -0.102 4.102
22 C -0.144 4.144
23 C -0.105 4.105
24 C -0.170 4.170
25 C 0.088 3.912
26 F -0.106 7.106
27 C 0.290 3.710
28 O -0.366 6.366
29 N -0.158 5.158
30 H 0.076 0.924
31 H 0.061 0.939
32 H 0.072 0.928
33 H 0.180 0.820
34 H 0.149 0.851
35 H 0.239 0.761
36 H 0.118 0.882
37 H 0.122 0.878
38 H 0.094 0.906
39 H 0.102 0.898
40 H 0.153 0.847
41 H 0.152 0.848
42 H 0.154 0.846
43 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 21.130 -18.691 -1.543 28.253
hybrid contribution 0.577 0.776 0.298 1.012
sum 21.707 -17.915 -1.245 28.172
Atomic orbital electron populations
1.69922 1.06004 1.27461 1.50236 1.24935 0.94966 0.99476 0.94754
0.86349 0.79724 0.82235 0.78330 1.20372 1.21021 1.19740 1.21290
0.94043 0.89476 1.51429 0.91363 1.19648 0.85675 0.81441 0.98957
1.48969 1.23655 1.19573 1.18548 1.22320 0.99832 0.90216 0.96301
1.20729 1.04336 1.06832 1.03067 1.19093 0.90296 0.92999 0.93134
1.42928 1.33030 1.26755 1.32282 1.21205 0.93718 0.87981 0.93073
0.86760 1.22963 0.93398 1.01373 0.99952 1.22239 0.98393 1.00729
0.80253 1.45629 1.03882 1.71368 1.10863 1.17441 0.89005 0.91812
0.99580 1.21259 0.94899 0.98457 0.95613 1.21118 0.95918 0.97618
0.99774 1.21099 0.99708 0.92003 0.97666 1.21166 0.95042 1.01280
0.99472 1.18144 0.92985 0.83991 0.96127 1.91558 1.82306 1.56444
1.80306 1.22066 0.83610 0.76001 0.89280 1.90758 1.82621 1.45076
1.18174 1.77385 1.04553 1.16748 1.17118 0.92449 0.93939 0.92839
0.81964 0.85099 0.76146 0.88233 0.87786 0.90642 0.89843 0.84723
0.84783 0.84635 0.84220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16
2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16
3 Si 0.91 22.37 29.54 -169.99 -5.02 17.35 16
4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
6 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16
7 C -0.52 -15.34 9.23 -34.44 -0.32 -15.66 16
8 H 0.07 2.10 7.81 -52.49 -0.41 1.69 16
9 C 0.26 6.95 6.26 -5.20 -0.03 6.91 16
10 N -0.33 -8.02 3.67 -62.56 -0.23 -8.25 16
11 C 0.06 1.35 11.44 -17.24 -0.20 1.15 16
12 C -0.32 -6.28 9.94 -39.82 -0.40 -6.68 16
13 C 0.30 6.17 8.16 -154.54 -1.26 4.91 16
14 N -0.71 -10.97 5.34 -53.58 -0.29 -11.25 16
15 C 0.15 1.82 3.22 -67.95 -0.22 1.60 16
16 H 0.11 1.32 7.26 -51.92 -0.38 0.94 16
17 C -0.14 -0.93 6.78 -25.01 -0.17 -1.10 16
18 C 0.11 0.80 7.29 -3.03 -0.02 0.78 16
19 N -0.58 -6.85 2.78 -112.10 -0.31 -7.16 16
20 C 0.11 1.32 5.39 -83.59 -0.45 0.87 16
21 C -0.08 -0.74 9.97 -39.41 -0.39 -1.13 16
22 C -0.13 -0.89 10.04 -39.60 -0.40 -1.28 16
23 C -0.09 -0.63 10.04 -39.55 -0.40 -1.02 16
24 C -0.15 -1.44 10.02 -39.54 -0.40 -1.83 16
25 C 0.11 1.37 7.31 -39.25 -0.29 1.08 16
26 F -0.13 -1.97 17.08 2.25 0.04 -1.93 16
27 C 0.51 7.50 7.62 -10.86 -0.08 7.42 16
28 O -0.50 -9.71 17.71 5.54 0.10 -9.61 16
29 N -0.33 -7.96 12.42 31.41 0.39 -7.57 16
30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
31 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16
32 H 0.05 1.40 8.07 -51.93 -0.42 0.98 16
33 H 0.16 2.80 8.06 -52.48 -0.42 2.38 16
34 H 0.13 2.32 7.49 -52.49 -0.39 1.93 16
35 H 0.40 5.73 8.70 -40.82 -0.36 5.38 16
36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16
38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
40 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16
41 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16
42 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16
43 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16
LS Contribution 379.82 15.07 5.72 5.72
Total: -1.00 -37.53 379.82 -9.29 -46.82
By element:
Atomic # 1 Polarization: 9.07 SS G_CDS: -5.31 Total: 3.76 kcal
Atomic # 6 Polarization: 2.78 SS G_CDS: -5.12 Total: -2.34 kcal
Atomic # 7 Polarization: -60.06 SS G_CDS: 0.30 Total: -59.76 kcal
Atomic # 8 Polarization: -9.71 SS G_CDS: 0.10 Total: -9.61 kcal
Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal
Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -37.53 -9.29 -46.82 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000086154393.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.873 kcal
(2) G-P(sol) polarization free energy of solvation -37.528 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.345 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.057 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds