Wall clock time and date at job start Sat Apr 11 2020 07:04:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86801 * 119.99980 * 2 1
4 4 H 1.48499 * 109.47522 * 270.00386 * 3 2 1
5 5 H 1.48504 * 109.47006 * 30.00333 * 3 2 1
6 6 H 1.48498 * 109.47233 * 150.00089 * 3 2 1
7 7 C 1.37877 * 120.00309 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00026 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99887 * 359.97438 * 7 2 1
10 10 N 1.46492 * 109.47331 * 179.97438 * 9 7 2
11 11 C 1.34961 * 125.97210 * 124.99805 * 10 9 7
12 12 C 1.35245 * 107.86421 * 180.02562 * 11 10 9
13 13 C 1.40427 * 107.86130 * 359.97438 * 12 11 10
14 14 N 1.39995 * 125.97635 * 179.97438 * 13 12 11
15 15 C 1.46497 * 120.00057 * 359.97438 * 14 13 12
16 16 H 1.09012 * 110.42926 * 36.09047 * 15 14 13
17 17 C 1.54625 * 110.48774 * 158.77327 * 15 14 13
18 18 C 1.54658 * 101.68373 * 93.67022 * 17 15 14
19 19 N 1.46758 * 105.38113 * 25.76864 * 18 17 15
20 20 C 1.40049 * 124.34780 * 162.85861 * 19 18 17
21 21 C 1.38811 * 120.07677 * 269.72435 * 20 19 18
22 22 C 1.38137 * 119.95663 * 180.02562 * 21 20 19
23 23 C 1.38285 * 120.11231 * 359.95261 * 22 21 20
24 24 C 1.38266 * 120.15512 * 0.02562 * 23 22 21
25 25 C 1.38315 * 120.04663 * 359.97438 * 24 23 22
26 26 F 1.35101 * 120.05830 * 179.72783 * 25 24 23
27 27 C 1.34419 * 111.30146 * 342.58593 * 19 18 17
28 28 O 1.21295 * 124.93737 * 180.69221 * 27 19 18
29 29 N 1.31223 * 108.04865 * 0.24821 * 13 12 11
30 30 H 0.97002 * 120.00026 * 359.97438 * 1 2 3
31 31 H 1.08998 * 109.46909 * 59.99745 * 9 7 2
32 32 H 1.09003 * 109.46678 * 300.00086 * 9 7 2
33 33 H 1.08004 * 126.06811 * 0.02562 * 11 10 9
34 34 H 1.07999 * 126.07184 * 179.97438 * 12 11 10
35 35 H 0.96998 * 120.00054 * 180.02562 * 14 13 12
36 36 H 1.09002 * 110.97056 * 212.00434 * 17 15 14
37 37 H 1.08998 * 110.96891 * 335.72735 * 17 15 14
38 38 H 1.08997 * 110.39483 * 266.74008 * 18 17 15
39 39 H 1.09000 * 110.17807 * 144.68579 * 18 17 15
40 40 H 1.08006 * 120.02101 * 0.03689 * 21 20 19
41 41 H 1.08001 * 119.94854 * 179.97438 * 22 21 20
42 42 H 1.07998 * 119.92464 * 180.02562 * 23 22 21
43 43 H 1.08002 * 119.97869 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0466 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 7 2.2031 -3.6126 -0.0018
11 6 2.2427 -4.6227 0.8925
12 6 3.2614 -5.4426 0.5473
13 6 3.8686 -4.9142 -0.6034
14 7 4.9632 -5.4635 -1.2816
15 6 5.5785 -6.7018 -0.7977
16 1 4.8186 -7.3732 -0.3975
17 6 6.3709 -7.3917 -1.9322
18 6 7.7948 -6.8324 -1.7046
19 7 7.8543 -6.4875 -0.2794
20 6 9.0409 -6.2727 0.4328
21 6 9.6701 -7.3321 1.0720
22 6 10.8402 -7.1174 1.7741
23 6 11.3865 -5.8488 1.8406
24 6 10.7639 -4.7902 1.2053
25 6 9.5921 -4.9979 0.5004
26 9 8.9806 -3.9628 -0.1158
27 6 6.6234 -6.3984 0.2533
28 8 6.3852 -6.1156 1.4085
29 7 3.2343 -3.8124 -0.9283
30 1 -0.4850 0.8401 0.0004
31 1 0.6241 -2.5567 -0.8903
32 1 0.6248 -2.5570 0.8897
33 1 1.5788 -4.7530 1.7343
34 1 3.5557 -6.3437 1.0648
35 1 5.3147 -5.0238 -2.0715
36 1 6.3506 -8.4756 -1.8190
37 1 5.9897 -7.0964 -2.9097
38 1 7.9559 -5.9437 -2.3148
39 1 8.5395 -7.5927 -1.9402
40 1 9.2452 -8.3237 1.0202
41 1 11.3294 -7.9417 2.2718
42 1 12.3016 -5.6844 2.3901
43 1 11.1928 -3.8005 1.2595
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000086154393.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:52
Heat of formation + Delta-G solvation = 25.763458 kcal
Electronic energy + Delta-G solvation = -29263.575286 eV
Core-core repulsion = 25031.582434 eV
Total energy + Delta-G solvation = -4231.992852 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.139 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-50.05794 -42.11728 -41.59330 -39.68769 -37.74990 -36.57028 -35.39632 -33.57780
-32.09599 -31.63414 -30.86758 -29.72738 -28.53604 -27.67200 -24.88344 -24.34853
-23.80144 -23.02848 -21.66139 -21.45185 -20.73928 -18.95303 -18.68028 -18.29414
-18.17723 -17.72094 -17.31038 -16.93661 -16.71684 -16.39608 -16.09671 -16.02601
-15.75467 -15.26300 -15.13248 -14.88742 -14.71202 -14.51002 -14.28790 -14.21700
-13.72470 -13.64840 -13.62782 -13.34442 -12.98824 -12.90702 -12.74268 -12.60351
-12.39232 -12.31492 -12.24175 -11.98282 -11.60914 -11.23222 -10.86807 -10.70362
-10.06527 -10.05346 -9.76829 -9.52420 -8.64630 -8.31295 -6.48840 -0.02856
0.12224 1.11958 1.29820 1.33472 1.35348 1.46458 1.78276 1.85125
2.21897 2.31617 2.48141 2.79114 2.95511 3.15788 3.36126 3.45248
3.73185 3.85196 3.99016 4.00693 4.12734 4.25663 4.28589 4.32672
4.41925 4.51020 4.68205 4.81433 4.89292 4.92653 4.95404 4.99479
5.03753 5.06254 5.10195 5.20846 5.33502 5.48411 5.51626 5.55418
5.81139 5.84265 5.92664 6.23802 6.35090 6.63252 6.70179 7.03227
7.20963 7.29191 8.72399
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.012911 B = 0.002803 C = 0.002482
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2168.135621 B = 9986.377332 C =11280.152021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C 0.019 3.981
3 Si 0.969 3.031
4 H -0.271 1.271
5 H -0.266 1.266
6 H -0.279 1.279
7 C -0.547 4.547
8 H 0.044 0.956
9 C 0.276 3.724
10 N -0.356 5.356
11 C 0.061 3.939
12 C -0.314 4.314
13 C 0.307 3.693
14 N -0.698 5.698
15 C 0.145 3.855
16 H 0.121 0.879
17 C -0.117 4.117
18 C 0.098 3.902
19 N -0.577 5.577
20 C 0.085 3.915
21 C -0.086 4.086
22 C -0.113 4.113
23 C -0.080 4.080
24 C -0.157 4.157
25 C 0.062 3.938
26 F -0.157 7.157
27 C 0.494 3.506
28 O -0.558 6.558
29 N -0.381 5.381
30 H 0.273 0.727
31 H 0.019 0.981
32 H 0.054 0.946
33 H 0.195 0.805
34 H 0.154 0.846
35 H 0.407 0.593
36 H 0.136 0.864
37 H 0.122 0.878
38 H 0.070 0.930
39 H 0.118 0.882
40 H 0.153 0.847
41 H 0.172 0.828
42 H 0.172 0.828
43 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.138 -22.259 -1.393 32.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.181 4.181
3 Si 0.794 3.206
4 H -0.196 1.196
5 H -0.191 1.191
6 H -0.204 1.204
7 C -0.586 4.586
8 H 0.062 0.938
9 C 0.157 3.843
10 N -0.137 5.137
11 C -0.088 4.088
12 C -0.346 4.346
13 C 0.050 3.950
14 N -0.341 5.341
15 C 0.035 3.965
16 H 0.139 0.861
17 C -0.155 4.155
18 C -0.023 4.023
19 N -0.308 5.308
20 C -0.006 4.006
21 C -0.105 4.105
22 C -0.131 4.131
23 C -0.097 4.097
24 C -0.176 4.176
25 C 0.041 3.959
26 F -0.136 7.136
27 C 0.280 3.720
28 O -0.433 6.433
29 N -0.213 5.213
30 H 0.082 0.918
31 H 0.037 0.963
32 H 0.072 0.928
33 H 0.212 0.788
34 H 0.172 0.828
35 H 0.244 0.756
36 H 0.154 0.846
37 H 0.140 0.860
38 H 0.089 0.911
39 H 0.136 0.864
40 H 0.171 0.829
41 H 0.190 0.810
42 H 0.189 0.811
43 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 23.644 -20.988 -1.481 31.650
hybrid contribution -0.001 1.329 0.298 1.362
sum 23.644 -19.659 -1.182 30.772
Atomic orbital electron populations
1.69986 1.07040 1.28736 1.50034 1.25712 0.95891 1.02573 0.93919
0.85391 0.78225 0.78376 0.78656 1.19594 1.19088 1.20407 1.21389
0.93068 0.91393 1.52704 0.93791 1.19200 0.85739 0.81633 0.97708
1.48697 1.24437 1.20311 1.20228 1.22969 1.00425 0.89096 0.96347
1.21020 1.03627 1.07236 1.02726 1.19519 0.90602 0.91809 0.93111
1.43197 1.31505 1.27647 1.31796 1.21557 0.93664 0.86637 0.94660
0.86114 1.23052 0.91133 1.02793 0.98505 1.22574 1.00109 1.01689
0.77885 1.45745 1.03227 1.69582 1.12253 1.17816 0.89370 0.92396
1.00992 1.21540 0.95450 0.98417 0.95127 1.21612 0.94799 0.98618
0.98088 1.21558 1.00373 0.91302 0.96484 1.21439 0.94270 1.02752
0.99156 1.18670 0.94845 0.83932 0.98440 1.91470 1.83127 1.57795
1.81236 1.22560 0.85189 0.75304 0.88915 1.90708 1.83770 1.48159
1.20698 1.77276 1.06055 1.19187 1.18796 0.91763 0.96262 0.92773
0.78841 0.82849 0.75603 0.84558 0.86001 0.91150 0.86352 0.82890
0.81037 0.81090 0.83401
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.44 13.29 21.45 0.28 -54.15 16
2 C 0.02 1.13 5.46 84.66 0.46 1.59 16
3 Si 0.97 46.50 29.54 68.60 2.03 48.53 16
4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16
5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
6 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16
7 C -0.55 -33.32 9.23 25.60 0.24 -33.08 16
8 H 0.04 2.83 7.81 -2.91 -0.02 2.81 16
9 C 0.28 15.41 6.26 85.64 0.54 15.95 16
10 N -0.36 -18.13 3.67 -351.85 -1.29 -19.43 16
11 C 0.06 2.57 11.44 83.52 0.96 3.52 16
12 C -0.31 -12.48 9.94 22.11 0.22 -12.26 16
13 C 0.31 12.85 8.16 133.38 1.09 13.94 16
14 N -0.70 -21.66 5.34 -323.44 -1.73 -23.38 16
15 C 0.14 3.29 3.22 44.98 0.14 3.44 16
16 H 0.12 2.59 7.26 -2.38 -0.02 2.58 16
17 C -0.12 -1.20 6.78 31.71 0.22 -0.99 16
18 C 0.10 1.27 7.29 86.90 0.63 1.90 16
19 N -0.58 -13.14 2.78 -627.15 -1.74 -14.89 16
20 C 0.08 1.96 5.39 38.16 0.21 2.16 16
21 C -0.09 -1.34 9.97 22.38 0.22 -1.12 16
22 C -0.11 -1.20 10.04 22.26 0.22 -0.98 16
23 C -0.08 -0.92 10.04 22.29 0.22 -0.70 16
24 C -0.16 -2.92 10.02 22.29 0.22 -2.70 16
25 C 0.06 1.60 7.31 22.48 0.16 1.77 16
26 F -0.16 -5.21 17.08 44.97 0.77 -4.45 16
27 C 0.49 14.66 7.62 87.90 0.67 15.33 16
28 O -0.56 -22.53 17.71 -3.08 -0.05 -22.59 16
29 N -0.38 -19.33 12.42 -54.54 -0.68 -20.01 16
30 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16
31 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16
32 H 0.05 2.95 8.07 -2.39 -0.02 2.93 16
33 H 0.19 6.61 8.06 -2.91 -0.02 6.59 16
34 H 0.15 5.33 7.49 -2.91 -0.02 5.31 16
35 H 0.41 11.65 8.70 -92.71 -0.81 10.84 16
36 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16
37 H 0.12 0.92 8.03 -2.39 -0.02 0.90 16
38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16
40 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16
41 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16
42 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16
43 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16
Total: -1.00 -87.98 379.82 4.26 -83.72
By element:
Atomic # 1 Polarization: 18.61 SS G_CDS: 0.25 Total: 18.86 kcal
Atomic # 6 Polarization: 1.36 SS G_CDS: 6.42 Total: 7.78 kcal
Atomic # 7 Polarization: -126.70 SS G_CDS: -5.15 Total: -131.86 kcal
Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.59 kcal
Atomic # 9 Polarization: -5.21 SS G_CDS: 0.77 Total: -4.45 kcal
Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal
Total: -87.98 4.26 -83.72 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000086154393.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.483 kcal
(2) G-P(sol) polarization free energy of solvation -87.979 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.504 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds