Wall clock time and date at job start Sat Apr 11 2020 07:05:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46496 * 120.00273 * 2 1
4 4 C 1.34783 * 120.00075 * 180.02562 * 2 1 3
5 5 O 1.21622 * 119.99633 * 3.29772 * 4 2 1
6 6 C 1.47286 * 120.00297 * 183.29459 * 4 2 1
7 7 C 1.37968 * 126.80512 * 330.91333 * 6 4 2
8 8 N 1.34165 * 107.88243 * 180.15499 * 7 6 4
9 9 C 1.46497 * 125.15716 * 179.84003 * 8 7 6
10 10 C 1.50700 * 109.46964 * 124.73133 * 9 8 7
11 11 H 1.08004 * 119.99981 * 359.97438 * 10 9 8
12 12 C 1.37871 * 120.00324 * 179.97438 * 10 9 8
13 13 N 1.31514 * 120.00322 * 179.97438 * 12 10 9
14 14 Si 1.86808 * 119.99969 * 359.97438 * 12 10 9
15 15 H 1.48504 * 109.46865 * 89.99706 * 14 12 10
16 16 H 1.48493 * 109.47060 * 210.00110 * 14 12 10
17 17 H 1.48500 * 109.47023 * 330.00263 * 14 12 10
18 18 N 1.39769 * 109.67611 * 359.58380 * 8 7 6
19 19 C 1.31368 * 109.07807 * 0.25841 * 18 8 7
20 20 C 1.48291 * 126.51351 * 179.97438 * 19 18 8
21 21 C 1.39381 * 120.12396 * 144.69837 * 20 19 18
22 22 C 1.38013 * 119.86886 * 179.72385 * 21 20 19
23 23 C 1.38324 * 120.12645 * 0.57905 * 22 21 20
24 24 N 1.48021 * 119.87585 * 179.69981 * 23 22 21
25 25 O 1.21800 * 120.00279 * 179.97438 * 24 23 22
26 26 O 1.21797 * 120.00178 * 359.97438 * 24 23 22
27 27 C 1.38328 * 120.25298 * 359.67591 * 23 22 21
28 28 C 1.38002 * 120.12756 * 0.04609 * 27 23 22
29 29 H 1.09001 * 109.46681 * 269.99934 * 1 2 3
30 30 H 1.08998 * 109.46911 * 29.99355 * 1 2 3
31 31 H 1.09003 * 109.47237 * 149.99812 * 1 2 3
32 32 H 1.08997 * 109.47758 * 276.16431 * 3 2 1
33 33 H 1.09001 * 109.46970 * 36.16714 * 3 2 1
34 34 H 1.09002 * 109.47529 * 156.16140 * 3 2 1
35 35 H 1.07995 * 126.05970 * 0.02991 * 7 6 4
36 36 H 1.09004 * 109.46928 * 244.72655 * 9 8 7
37 37 H 1.08994 * 109.47745 * 4.72627 * 9 8 7
38 38 H 0.97004 * 120.00105 * 180.02562 * 13 12 10
39 39 H 1.07992 * 120.06702 * 359.97438 * 21 20 19
40 40 H 1.07996 * 119.93549 * 180.28104 * 22 21 20
41 41 H 1.08004 * 119.93837 * 180.02562 * 27 23 22
42 42 H 1.08005 * 120.07032 * 180.02562 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1389 -1.1672 -0.0005
5 8 1.5323 -2.2196 -0.0616
6 6 3.6099 -1.1684 0.0728
7 6 4.4616 -0.1884 -0.3940
8 7 5.7190 -0.5772 -0.1339
9 6 6.9244 0.1827 -0.4740
10 6 7.7490 0.3993 0.7686
11 1 7.4089 0.0101 1.7170
12 6 8.9375 1.0941 0.6949
13 7 9.6569 1.2836 1.7795
14 14 9.5261 1.7666 -0.9455
15 1 8.9976 3.1414 -1.1352
16 1 11.0106 1.8001 -0.9628
17 1 9.0379 0.8929 -2.0425
18 7 5.7041 -1.8145 0.5161
19 6 4.4592 -2.2081 0.6616
20 6 4.0003 -3.4656 1.2996
21 6 2.8189 -3.4842 2.0390
22 6 2.3937 -4.6587 2.6258
23 6 3.1437 -5.8132 2.4913
24 7 2.6859 -7.0683 3.1286
25 8 3.3443 -8.0863 3.0113
26 8 1.6508 -7.0831 3.7703
27 6 4.3198 -5.7993 1.7632
28 6 4.7518 -4.6320 1.1672
29 1 -0.3633 0.0000 1.0277
30 1 -0.3633 0.8900 -0.5137
31 1 -0.3634 -0.8900 -0.5139
32 1 2.2837 1.6386 -1.0217
33 1 1.6607 1.9981 0.6065
34 1 3.1933 1.1133 0.4153
35 1 4.1681 0.7282 -0.8840
36 1 7.5099 -0.3734 -1.2062
37 1 6.6395 1.1474 -0.8937
38 1 10.4929 1.7728 1.7277
39 1 2.2352 -2.5822 2.1490
40 1 1.4761 -4.6754 3.1950
41 1 4.9012 -6.7038 1.6612
42 1 5.6699 -4.6224 0.5986
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000150112322.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:32
Heat of formation + Delta-G solvation = 81.331359 kcal
Electronic energy + Delta-G solvation = -29260.253202 eV
Core-core repulsion = 25018.297166 eV
Total energy + Delta-G solvation = -4241.956036 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.132 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.13428 -41.18357 -39.21921 -39.18834 -36.53312 -35.59873 -34.21310 -32.86061
-31.53296 -31.36700 -30.74672 -28.39262 -27.74951 -26.66820 -25.95214 -23.47397
-23.18993 -22.53305 -21.35910 -20.36780 -19.33091 -19.23326 -18.60208 -17.49481
-17.36594 -17.05141 -16.56141 -16.03845 -15.73829 -15.35957 -15.31086 -14.81036
-14.73860 -14.11971 -13.97475 -13.73292 -13.54779 -13.17278 -13.05499 -12.80261
-12.73842 -12.58021 -12.43694 -12.22605 -11.94825 -11.63564 -11.51688 -11.34961
-11.14162 -11.12156 -11.05503 -10.62828 -10.58622 -10.03591 -9.93767 -9.65944
-9.38409 -8.99496 -8.89700 -8.79920 -8.21225 -6.45676 -4.51722 -0.22440
0.99636 1.23043 1.44174 1.74725 2.34071 2.67798 2.96150 2.99082
3.03398 3.10971 3.22448 3.53017 4.01742 4.17747 4.36424 4.46367
4.57991 4.76950 4.82388 4.89618 4.91577 4.98359 5.11838 5.16315
5.25918 5.35537 5.41347 5.50472 5.56785 5.63191 5.64532 5.70443
5.74843 5.97972 6.18164 6.20047 6.25136 6.34042 6.47082 6.56073
6.98093 7.13024 7.26840 7.67976 7.83638 8.06203 8.21165 8.60625
9.06604 10.66309
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.009553 B = 0.003365 C = 0.002606
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2930.276085 B = 8318.333185 C =10741.706714
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.621 5.621
3 C 0.060 3.940
4 C 0.597 3.403
5 O -0.542 6.542
6 C -0.297 4.297
7 C 0.092 3.908
8 N -0.305 5.305
9 C 0.223 3.777
10 C -0.545 4.545
11 H 0.088 0.912
12 C 0.082 3.918
13 N -0.879 5.879
14 Si 0.871 3.129
15 H -0.270 1.270
16 H -0.277 1.277
17 H -0.264 1.264
18 N -0.236 5.236
19 C 0.114 3.886
20 C 0.063 3.937
21 C -0.071 4.071
22 C -0.055 4.055
23 C -0.048 4.048
24 N 0.033 4.967
25 O -0.167 6.167
26 O -0.168 6.168
27 C -0.057 4.057
28 C -0.093 4.093
29 H 0.053 0.947
30 H 0.067 0.933
31 H 0.077 0.923
32 H 0.058 0.942
33 H 0.070 0.930
34 H 0.091 0.909
35 H 0.188 0.812
36 H 0.051 0.949
37 H 0.054 0.946
38 H 0.271 0.729
39 H 0.144 0.856
40 H 0.153 0.847
41 H 0.155 0.845
42 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.807 -1.227 -4.519 15.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.355 5.355
3 C -0.083 4.083
4 C 0.387 3.613
5 O -0.420 6.420
6 C -0.313 4.313
7 C -0.060 4.060
8 N -0.081 5.081
9 C 0.104 3.896
10 C -0.583 4.583
11 H 0.106 0.894
12 C -0.124 4.124
13 N -0.515 5.515
14 Si 0.697 3.303
15 H -0.195 1.195
16 H -0.203 1.203
17 H -0.189 1.189
18 N -0.057 5.057
19 C -0.053 4.053
20 C 0.061 3.939
21 C -0.091 4.091
22 C -0.074 4.074
23 C -0.131 4.131
24 N 0.551 4.449
25 O -0.382 6.382
26 O -0.383 6.383
27 C -0.076 4.076
28 C -0.113 4.113
29 H 0.072 0.928
30 H 0.086 0.914
31 H 0.096 0.904
32 H 0.077 0.923
33 H 0.089 0.911
34 H 0.109 0.891
35 H 0.205 0.795
36 H 0.068 0.932
37 H 0.071 0.929
38 H 0.082 0.918
39 H 0.162 0.838
40 H 0.171 0.829
41 H 0.172 0.828
42 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -13.317 -1.252 -4.624 14.153
hybrid contribution -0.392 0.723 -0.833 1.171
sum -13.709 -0.529 -5.457 14.765
Atomic orbital electron populations
1.21596 0.79047 1.03049 1.01753 1.47544 1.06863 1.06295 1.74799
1.22308 0.98958 0.85255 1.01788 1.17296 0.85680 0.83033 0.75304
1.90768 1.69790 1.30760 1.50718 1.20866 0.92944 0.98348 1.19107
1.23361 0.84969 0.98662 0.99013 1.48894 1.06728 1.13757 1.38754
1.20321 0.80241 0.89996 0.98997 1.20983 1.05735 1.37686 0.93916
0.89443 1.24804 0.95745 0.95127 0.96709 1.69852 1.14135 1.39589
1.27935 0.86937 0.79436 0.80012 0.83908 1.19541 1.20256 1.18856
1.77507 1.17698 0.96839 1.13671 1.21445 0.90128 0.93696 1.00047
1.18082 0.93092 0.90204 0.92526 1.21096 0.94956 0.97929 0.95086
1.20857 0.99301 0.89791 0.97441 1.21149 1.00314 0.84953 1.06701
1.43646 0.99806 1.02663 0.98793 1.94519 1.55265 1.22826 1.65617
1.94515 1.12658 1.92040 1.39042 1.20909 0.93173 1.00114 0.93385
1.21292 1.00384 0.90148 0.99459 0.92825 0.91429 0.90406 0.92347
0.91111 0.89099 0.79507 0.93155 0.92874 0.91836 0.83782 0.82933
0.82780 0.82985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.76 10.49 59.85 0.63 1.39 16
2 N -0.62 -6.79 3.27 -190.86 -0.62 -7.41 16
3 C 0.06 0.50 9.08 59.84 0.54 1.04 16
4 C 0.60 8.51 6.66 -12.58 -0.08 8.43 16
5 O -0.54 -8.93 14.19 5.26 0.07 -8.86 16
6 C -0.30 -4.57 5.76 -102.95 -0.59 -5.16 16
7 C 0.09 1.34 8.99 -16.63 -0.15 1.19 16
8 N -0.30 -5.62 3.62 -62.04 -0.22 -5.85 16
9 C 0.22 4.43 5.28 -5.20 -0.03 4.41 16
10 C -0.55 -13.64 9.76 -34.44 -0.34 -13.97 16
11 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16
12 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16
13 N -0.88 -24.39 13.96 55.43 0.77 -23.62 16
14 Si 0.87 18.09 27.47 -169.99 -4.67 13.42 16
15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16
16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16
17 H -0.26 -5.12 6.54 56.52 0.37 -4.75 16
18 N -0.24 -4.60 12.27 34.57 0.42 -4.18 16
19 C 0.11 1.94 6.93 -80.56 -0.56 1.38 16
20 C 0.06 0.96 5.67 -104.91 -0.59 0.37 16
21 C -0.07 -0.98 8.02 -39.24 -0.31 -1.29 16
22 C -0.05 -0.71 9.54 -39.63 -0.38 -1.08 16
23 C -0.05 -0.65 6.85 -79.88 -0.55 -1.20 16
24 N 0.03 0.50 4.45 34.00 0.15 0.65 16
25 O -0.17 -2.56 18.44 -29.46 -0.54 -3.10 16
26 O -0.17 -2.56 18.44 -29.46 -0.54 -3.10 16
27 C -0.06 -0.72 9.54 -39.63 -0.38 -1.10 16
28 C -0.09 -1.27 9.76 -39.24 -0.38 -1.65 16
29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16
31 H 0.08 0.76 7.38 -51.93 -0.38 0.38 16
32 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16
33 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16
34 H 0.09 0.89 4.57 -51.93 -0.24 0.65 16
35 H 0.19 1.94 5.87 -52.49 -0.31 1.63 16
36 H 0.05 1.01 7.20 -51.93 -0.37 0.64 16
37 H 0.05 0.92 7.47 -51.93 -0.39 0.53 16
38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16
39 H 0.14 1.94 6.53 -52.49 -0.34 1.60 16
40 H 0.15 1.69 7.60 -52.49 -0.40 1.29 16
41 H 0.15 1.65 7.60 -52.48 -0.40 1.25 16
42 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16
LS Contribution 365.53 15.07 5.51 5.51
Total: -1.00 -31.34 365.53 -7.46 -38.80
By element:
Atomic # 1 Polarization: 7.52 SS G_CDS: -4.52 Total: 3.01 kcal
Atomic # 6 Polarization: -2.00 SS G_CDS: -3.27 Total: -5.27 kcal
Atomic # 7 Polarization: -40.91 SS G_CDS: 0.50 Total: -40.41 kcal
Atomic # 8 Polarization: -14.05 SS G_CDS: -1.01 Total: -15.06 kcal
Atomic # 14 Polarization: 18.09 SS G_CDS: -4.67 Total: 13.42 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -31.34 -7.46 -38.80 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000150112322.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.131 kcal
(2) G-P(sol) polarization free energy of solvation -31.340 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.791 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal
(6) G-S(sol) free energy of system = (1) + (5) 81.331 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds