Wall clock time and date at job start Sat Apr 11 2020 07:05:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46496 * 120.00273 * 2 1
4 4 C 1.34783 * 120.00075 * 180.02562 * 2 1 3
5 5 O 1.21622 * 119.99633 * 3.29772 * 4 2 1
6 6 C 1.47286 * 120.00297 * 183.29459 * 4 2 1
7 7 C 1.37968 * 126.80512 * 330.91333 * 6 4 2
8 8 N 1.34165 * 107.88243 * 180.15499 * 7 6 4
9 9 C 1.46497 * 125.15716 * 179.84003 * 8 7 6
10 10 C 1.50700 * 109.46964 * 124.73133 * 9 8 7
11 11 H 1.08004 * 119.99981 * 359.97438 * 10 9 8
12 12 C 1.37871 * 120.00324 * 179.97438 * 10 9 8
13 13 N 1.31514 * 120.00322 * 179.97438 * 12 10 9
14 14 Si 1.86808 * 119.99969 * 359.97438 * 12 10 9
15 15 H 1.48504 * 109.46865 * 89.99706 * 14 12 10
16 16 H 1.48493 * 109.47060 * 210.00110 * 14 12 10
17 17 H 1.48500 * 109.47023 * 330.00263 * 14 12 10
18 18 N 1.39769 * 109.67611 * 359.58380 * 8 7 6
19 19 C 1.31368 * 109.07807 * 0.25841 * 18 8 7
20 20 C 1.48291 * 126.51351 * 179.97438 * 19 18 8
21 21 C 1.39381 * 120.12396 * 144.69837 * 20 19 18
22 22 C 1.38013 * 119.86886 * 179.72385 * 21 20 19
23 23 C 1.38324 * 120.12645 * 0.57905 * 22 21 20
24 24 N 1.48021 * 119.87585 * 179.69981 * 23 22 21
25 25 O 1.21800 * 120.00279 * 179.97438 * 24 23 22
26 26 O 1.21797 * 120.00178 * 359.97438 * 24 23 22
27 27 C 1.38328 * 120.25298 * 359.67591 * 23 22 21
28 28 C 1.38002 * 120.12756 * 0.04609 * 27 23 22
29 29 H 1.09001 * 109.46681 * 269.99934 * 1 2 3
30 30 H 1.08998 * 109.46911 * 29.99355 * 1 2 3
31 31 H 1.09003 * 109.47237 * 149.99812 * 1 2 3
32 32 H 1.08997 * 109.47758 * 276.16431 * 3 2 1
33 33 H 1.09001 * 109.46970 * 36.16714 * 3 2 1
34 34 H 1.09002 * 109.47529 * 156.16140 * 3 2 1
35 35 H 1.07995 * 126.05970 * 0.02991 * 7 6 4
36 36 H 1.09004 * 109.46928 * 244.72655 * 9 8 7
37 37 H 1.08994 * 109.47745 * 4.72627 * 9 8 7
38 38 H 0.97004 * 120.00105 * 180.02562 * 13 12 10
39 39 H 1.07992 * 120.06702 * 359.97438 * 21 20 19
40 40 H 1.07996 * 119.93549 * 180.28104 * 22 21 20
41 41 H 1.08004 * 119.93837 * 180.02562 * 27 23 22
42 42 H 1.08005 * 120.07032 * 180.02562 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1389 -1.1672 -0.0005
5 8 1.5323 -2.2196 -0.0616
6 6 3.6099 -1.1684 0.0728
7 6 4.4616 -0.1884 -0.3940
8 7 5.7190 -0.5772 -0.1339
9 6 6.9244 0.1827 -0.4740
10 6 7.7490 0.3993 0.7686
11 1 7.4089 0.0101 1.7170
12 6 8.9375 1.0941 0.6949
13 7 9.6569 1.2836 1.7795
14 14 9.5261 1.7666 -0.9455
15 1 8.9976 3.1414 -1.1352
16 1 11.0106 1.8001 -0.9628
17 1 9.0379 0.8929 -2.0425
18 7 5.7041 -1.8145 0.5161
19 6 4.4592 -2.2081 0.6616
20 6 4.0003 -3.4656 1.2996
21 6 2.8189 -3.4842 2.0390
22 6 2.3937 -4.6587 2.6258
23 6 3.1437 -5.8132 2.4913
24 7 2.6859 -7.0683 3.1286
25 8 3.3443 -8.0863 3.0113
26 8 1.6508 -7.0831 3.7703
27 6 4.3198 -5.7993 1.7632
28 6 4.7518 -4.6320 1.1672
29 1 -0.3633 0.0000 1.0277
30 1 -0.3633 0.8900 -0.5137
31 1 -0.3634 -0.8900 -0.5139
32 1 2.2837 1.6386 -1.0217
33 1 1.6607 1.9981 0.6065
34 1 3.1933 1.1133 0.4153
35 1 4.1681 0.7282 -0.8840
36 1 7.5099 -0.3734 -1.2062
37 1 6.6395 1.1474 -0.8937
38 1 10.4929 1.7728 1.7277
39 1 2.2352 -2.5822 2.1490
40 1 1.4761 -4.6754 3.1950
41 1 4.9012 -6.7038 1.6612
42 1 5.6699 -4.6224 0.5986
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000150112322.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:31
Heat of formation + Delta-G solvation = 62.493292 kcal
Electronic energy + Delta-G solvation = -29261.070082 eV
Core-core repulsion = 25018.297166 eV
Total energy + Delta-G solvation = -4242.772916 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.132 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-43.30516 -42.40375 -40.32382 -40.25461 -37.72252 -36.54237 -35.77185 -34.39951
-32.78126 -32.59334 -31.88357 -29.82724 -28.57945 -27.78084 -27.03042 -24.91330
-24.30722 -23.75347 -22.57920 -21.52359 -20.46084 -20.39521 -19.77767 -19.16825
-18.66813 -18.18651 -17.69092 -17.06221 -16.81823 -16.66456 -16.37392 -16.11817
-15.93080 -15.50274 -15.00365 -14.82327 -14.67341 -14.52653 -14.26012 -14.03050
-13.88141 -13.53448 -13.38308 -13.08946 -13.06854 -12.83398 -12.76556 -12.57295
-12.55405 -12.32745 -12.32359 -12.13520 -11.94036 -11.76316 -11.17015 -10.94715
-10.88063 -10.44655 -10.13908 -9.70049 -9.43800 -8.38687 -6.50800 -1.38304
-0.06827 0.05263 0.29474 0.60121 1.09749 1.35571 1.37222 1.45480
1.53439 2.01362 2.19042 2.27875 2.40457 2.93390 3.05376 3.28735
3.42934 3.46649 3.80086 3.82024 3.84703 4.08585 4.20770 4.26991
4.31299 4.51751 4.54500 4.56375 4.59652 4.60508 4.65428 4.75148
4.80438 4.94653 4.99048 5.06103 5.08039 5.13044 5.31526 5.39025
5.55660 5.76254 6.18416 6.33762 6.47899 6.51367 6.62122 7.12501
7.18970 8.77808
Molecular weight = 344.13amu
Principal moments of inertia in cm(-1)
A = 0.009553 B = 0.003365 C = 0.002606
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2930.276085 B = 8318.333185 C =10741.706714
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.085 3.915
2 N -0.615 5.615
3 C 0.053 3.947
4 C 0.594 3.406
5 O -0.572 6.572
6 C -0.305 4.305
7 C 0.110 3.890
8 N -0.328 5.328
9 C 0.229 3.771
10 C -0.549 4.549
11 H 0.030 0.970
12 C 0.019 3.981
13 N -0.940 5.940
14 Si 0.950 3.050
15 H -0.249 1.249
16 H -0.288 1.288
17 H -0.236 1.236
18 N -0.287 5.287
19 C 0.111 3.889
20 C 0.043 3.957
21 C -0.070 4.070
22 C -0.048 4.048
23 C -0.055 4.055
24 N 0.033 4.967
25 O -0.175 6.175
26 O -0.174 6.174
27 C -0.048 4.048
28 C -0.096 4.096
29 H 0.060 0.940
30 H 0.100 0.900
31 H 0.062 0.938
32 H 0.086 0.914
33 H 0.093 0.907
34 H 0.075 0.925
35 H 0.233 0.767
36 H 0.053 0.947
37 H 0.094 0.906
38 H 0.272 0.728
39 H 0.146 0.854
40 H 0.172 0.828
41 H 0.175 0.825
42 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.484 0.366 -6.876 17.865
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.347 5.347
3 C -0.089 4.089
4 C 0.383 3.617
5 O -0.453 6.453
6 C -0.320 4.320
7 C -0.040 4.040
8 N -0.105 5.105
9 C 0.110 3.890
10 C -0.587 4.587
11 H 0.048 0.952
12 C -0.181 4.181
13 N -0.578 5.578
14 Si 0.771 3.229
15 H -0.173 1.173
16 H -0.214 1.214
17 H -0.159 1.159
18 N -0.108 5.108
19 C -0.056 4.056
20 C 0.041 3.959
21 C -0.090 4.090
22 C -0.067 4.067
23 C -0.138 4.138
24 N 0.550 4.450
25 O -0.389 6.389
26 O -0.388 6.388
27 C -0.067 4.067
28 C -0.115 4.115
29 H 0.079 0.921
30 H 0.118 0.882
31 H 0.081 0.919
32 H 0.105 0.895
33 H 0.112 0.888
34 H 0.093 0.907
35 H 0.249 0.751
36 H 0.071 0.929
37 H 0.112 0.888
38 H 0.081 0.919
39 H 0.164 0.836
40 H 0.189 0.811
41 H 0.192 0.808
42 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -15.048 0.353 -6.984 16.593
hybrid contribution 0.001 0.201 0.018 0.202
sum -15.047 0.555 -6.966 16.590
Atomic orbital electron populations
1.21769 0.77466 1.03915 1.02510 1.47649 1.07931 1.06113 1.73033
1.22516 0.98136 0.84377 1.03907 1.17195 0.85119 0.83750 0.75598
1.90748 1.70032 1.32060 1.52431 1.21122 0.93909 0.98097 1.18895
1.24070 0.83121 0.99424 0.97395 1.48729 1.07495 1.13887 1.40364
1.20157 0.80580 0.91909 0.96345 1.21138 1.06710 1.36838 0.94014
0.95207 1.25867 0.95657 0.95368 1.01211 1.70043 1.15003 1.41540
1.31228 0.85700 0.78041 0.80424 0.78734 1.17322 1.21360 1.15910
1.77426 1.19348 0.98237 1.15802 1.21836 0.89995 0.94457 0.99327
1.18288 0.94000 0.90222 0.93431 1.21091 0.94528 0.98345 0.95014
1.21026 0.99699 0.89083 0.96909 1.21285 1.00831 0.84687 1.07025
1.43767 0.99694 1.02882 0.98688 1.94513 1.55311 1.23209 1.65830
1.94508 1.12842 1.92151 1.39290 1.21082 0.92861 1.00430 0.92311
1.21357 1.00422 0.90084 0.99669 0.92131 0.88195 0.91893 0.89549
0.88829 0.90698 0.75114 0.92919 0.88816 0.91882 0.83625 0.81063
0.80792 0.82632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.23 10.49 127.77 1.34 2.57 16
2 N -0.61 -11.79 3.27 -875.99 -2.87 -14.66 16
3 C 0.05 0.68 9.08 127.77 1.16 1.83 16
4 C 0.59 16.19 6.66 86.62 0.58 16.76 16
5 O -0.57 -18.53 14.19 -4.10 -0.06 -18.59 16
6 C -0.30 -9.15 5.76 -18.78 -0.11 -9.26 16
7 C 0.11 3.01 8.99 84.27 0.76 3.77 16
8 N -0.33 -11.94 3.62 -350.18 -1.27 -13.21 16
9 C 0.23 8.82 5.28 85.63 0.45 9.27 16
10 C -0.55 -28.16 9.76 25.60 0.25 -27.91 16
11 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16
12 C 0.02 0.96 5.47 84.65 0.46 1.42 16
13 N -0.94 -54.25 13.96 21.45 0.30 -53.95 16
14 Si 0.95 36.36 27.47 68.60 1.88 38.24 16
15 H -0.25 -8.68 7.11 99.48 0.71 -7.98 16
16 H -0.29 -11.43 7.11 99.48 0.71 -10.73 16
17 H -0.24 -7.92 6.54 99.48 0.65 -7.27 16
18 N -0.29 -11.55 12.27 -44.53 -0.55 -12.10 16
19 C 0.11 3.87 6.93 44.07 0.31 4.18 16
20 C 0.04 1.33 5.67 -20.05 -0.11 1.22 16
21 C -0.07 -1.93 8.02 22.49 0.18 -1.75 16
22 C -0.05 -1.22 9.54 22.24 0.21 -1.00 16
23 C -0.05 -1.47 6.85 36.42 0.25 -1.22 16
24 N 0.03 0.97 4.45 -46.36 -0.21 0.77 16
25 O -0.17 -5.21 18.44 18.89 0.35 -4.86 16
26 O -0.17 -5.16 18.44 18.89 0.35 -4.81 16
27 C -0.05 -1.20 9.54 22.24 0.21 -0.98 16
28 C -0.10 -2.64 9.76 22.49 0.22 -2.42 16
29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.10 0.81 8.07 -2.39 -0.02 0.79 16
31 H 0.06 1.13 7.38 -2.39 -0.02 1.11 16
32 H 0.09 0.69 7.90 -2.39 -0.02 0.67 16
33 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16
34 H 0.07 1.24 4.57 -2.39 -0.01 1.23 16
35 H 0.23 3.87 5.87 -2.91 -0.02 3.85 16
36 H 0.05 2.01 7.20 -2.38 -0.02 1.99 16
37 H 0.09 2.87 7.47 -2.39 -0.02 2.86 16
38 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16
39 H 0.15 3.95 6.53 -2.91 -0.02 3.93 16
40 H 0.17 3.60 7.60 -2.91 -0.02 3.58 16
41 H 0.17 3.56 7.60 -2.91 -0.02 3.54 16
42 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16
Total: -1.00 -72.96 365.53 5.12 -67.84
By element:
Atomic # 1 Polarization: 17.81 SS G_CDS: 1.03 Total: 18.84 kcal
Atomic # 6 Polarization: -9.69 SS G_CDS: 6.16 Total: -3.53 kcal
Atomic # 7 Polarization: -88.55 SS G_CDS: -4.59 Total: -93.14 kcal
Atomic # 8 Polarization: -28.89 SS G_CDS: 0.64 Total: -28.25 kcal
Atomic # 14 Polarization: 36.36 SS G_CDS: 1.88 Total: 38.24 kcal
Total: -72.96 5.12 -67.84 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000150112322.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 130.336 kcal
(2) G-P(sol) polarization free energy of solvation -72.959 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.377 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.493 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds