Wall clock time and date at job start Sat Apr 11 2020 07:04:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86803 * 120.00249 * 2 1
4 4 H 1.48503 * 109.46889 * 270.00001 * 3 2 1
5 5 H 1.48494 * 109.47191 * 29.99950 * 3 2 1
6 6 H 1.48501 * 109.46989 * 150.00556 * 3 2 1
7 7 C 1.38803 * 119.99746 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00074 * 359.97438 * 7 2 1
9 9 S 1.76199 * 119.99949 * 179.97438 * 7 2 1
10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2
11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7
12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9
13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9
14 14 C 1.47389 * 135.85436 * 359.62880 * 13 11 10
15 15 C 1.52072 * 87.40867 * 154.39038 * 14 13 11
16 16 C 1.47390 * 135.85067 * 180.02562 * 13 11 10
17 17 C 1.53510 * 117.20967 * 267.27762 * 15 14 13
18 18 C 1.54631 * 102.70229 * 262.93125 * 17 15 14
19 19 N 1.47152 * 107.37719 * 339.38485 * 18 17 15
20 20 C 1.34771 * 125.58017 * 179.12317 * 19 18 17
21 21 O 1.21279 * 120.00243 * 179.97438 * 20 19 18
22 22 C 1.50705 * 120.00176 * 359.97271 * 20 19 18
23 23 C 1.53004 * 109.47412 * 180.02562 * 22 20 19
24 24 C 1.52994 * 109.47152 * 180.02562 * 23 22 20
25 25 F 1.39903 * 109.47051 * 180.02562 * 24 23 22
26 26 C 1.47752 * 108.83933 * 359.08945 * 19 18 17
27 27 H 0.97005 * 119.99717 * 359.97438 * 1 2 3
28 28 H 1.09005 * 109.46889 * 299.99975 * 10 9 7
29 29 H 1.09000 * 109.47231 * 59.99947 * 10 9 7
30 30 H 1.09003 * 113.53685 * 268.99497 * 14 13 11
31 31 H 1.08989 * 113.54394 * 39.67574 * 14 13 11
32 32 H 1.09008 * 113.54239 * 320.31810 * 16 13 11
33 33 H 1.09003 * 113.54833 * 90.92604 * 16 13 11
34 34 H 1.08998 * 110.76752 * 21.23193 * 17 15 14
35 35 H 1.08998 * 110.76720 * 144.63238 * 17 15 14
36 36 H 1.08997 * 109.86875 * 98.83649 * 18 17 15
37 37 H 1.09002 * 109.86499 * 219.80520 * 18 17 15
38 38 H 1.08995 * 109.47118 * 300.00503 * 22 20 19
39 39 H 1.09003 * 109.46970 * 59.99958 * 22 20 19
40 40 H 1.09001 * 109.46595 * 300.00329 * 23 22 20
41 41 H 1.09002 * 109.46690 * 59.99882 * 23 22 20
42 42 H 1.09004 * 109.46919 * 299.99831 * 24 23 22
43 43 H 1.09003 * 109.47455 * 59.99671 * 24 23 22
44 44 H 1.09001 * 110.40239 * 263.50151 * 26 19 18
45 45 H 1.08991 * 110.40598 * 141.08126 * 26 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4479 2.6527 0.7000
6 1 3.5479 1.4400 0.6999
7 6 2.0102 -1.2021 -0.0005
8 1 1.4702 -2.1374 -0.0005
9 16 3.7722 -1.2022 -0.0012
10 6 4.0865 -2.9847 -0.0009
11 6 5.5730 -3.2327 -0.0008
12 8 6.3439 -2.2965 -0.0014
13 7 6.0455 -4.4949 -0.0011
14 6 5.4549 -5.8453 0.0050
15 6 6.7337 -6.3326 -0.6582
16 6 7.3777 -5.1254 -0.0007
17 6 6.7531 -6.3841 -2.1924
18 6 6.4173 -7.8645 -2.4871
19 7 6.7223 -8.6348 -1.2710
20 6 6.5488 -9.9627 -1.1198
21 8 6.8355 -10.4960 -0.0689
22 6 5.9984 -10.7850 -2.2564
23 6 5.9012 -12.2500 -1.8259
24 6 5.3430 -13.0849 -2.9801
25 9 5.2536 -14.4243 -2.5861
26 6 7.2507 -7.7143 -0.2431
27 1 -0.4850 0.8401 0.0004
28 1 3.6439 -3.4315 0.8894
29 1 3.6432 -3.4319 -0.8906
30 1 5.3025 -6.2492 1.0060
31 1 4.5721 -5.9373 -0.6275
32 1 8.1006 -4.6162 -0.6382
33 1 7.7639 -5.3268 0.9985
34 1 5.9926 -5.7248 -2.6108
35 1 7.7410 -6.1284 -2.5752
36 1 5.3599 -7.9628 -2.7324
37 1 7.0250 -8.2238 -3.3176
38 1 5.0071 -10.4186 -2.5232
39 1 6.6604 -10.7025 -3.1184
40 1 6.8923 -12.6166 -1.5588
41 1 5.2389 -12.3322 -0.9640
42 1 4.3519 -12.7182 -3.2475
43 1 6.0055 -13.0026 -3.8417
44 1 8.3406 -7.7285 -0.2445
45 1 6.8676 -7.9835 0.7411
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001488813695.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:38
Heat of formation + Delta-G solvation = -87.711012 kcal
Electronic energy + Delta-G solvation = -26930.463431 eV
Core-core repulsion = 22796.701158 eV
Total energy + Delta-G solvation = -4133.762274 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 344.136 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-48.02625 -41.50580 -39.89366 -38.25673 -36.38464 -34.52886 -32.48275 -31.77822
-30.37772 -29.42315 -27.84516 -26.47908 -25.86020 -25.50405 -23.70960 -22.41884
-20.09456 -19.84350 -18.85770 -17.77741 -17.50863 -17.16106 -16.79941 -16.59748
-16.31823 -16.07942 -15.62222 -15.45263 -15.09234 -14.92867 -14.80112 -14.44209
-14.05044 -13.83451 -13.57988 -13.46603 -13.16901 -12.94819 -12.86062 -12.68509
-12.48167 -12.24518 -12.02422 -12.00355 -11.68637 -11.56716 -11.45156 -11.29653
-11.15272 -11.04490 -10.85304 -10.66289 -10.30106 -9.89804 -9.60495 -9.12348
-9.04598 -8.78637 -8.55537 -6.97443 -6.32943 -4.05394 2.18734 2.39558
2.50550 2.84874 3.05065 3.29611 3.47066 3.51999 3.71202 3.75408
4.07021 4.12140 4.18139 4.23509 4.28882 4.39380 4.51308 4.54185
4.60806 4.65427 4.71486 4.90677 4.91903 5.04105 5.05579 5.06185
5.14852 5.15617 5.19697 5.23429 5.28710 5.38286 5.40420 5.43744
5.52490 5.65115 5.69637 5.73242 5.78249 5.81693 5.95129 7.00715
7.66074 7.70035 7.89998 8.33669 8.37292 9.13024 10.76196
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.018263 B = 0.001890 C = 0.001766
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1532.777971 B =14814.713540 C =15850.921179
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.879 5.879
2 C 0.096 3.904
3 Si 0.857 3.143
4 H -0.267 1.267
5 H -0.274 1.274
6 H -0.235 1.235
7 C -0.522 4.522
8 H 0.088 0.912
9 S -0.141 6.141
10 C -0.115 4.115
11 C 0.561 3.439
12 O -0.515 6.515
13 N -0.650 5.650
14 C 0.118 3.882
15 C -0.116 4.116
16 C 0.126 3.874
17 C -0.104 4.104
18 C 0.100 3.900
19 N -0.620 5.620
20 C 0.530 3.470
21 O -0.538 6.538
22 C -0.135 4.135
23 C -0.140 4.140
24 C 0.062 3.938
25 F -0.218 7.218
26 C 0.126 3.874
27 H 0.271 0.729
28 H 0.096 0.904
29 H 0.095 0.905
30 H 0.089 0.911
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.087 0.913
34 H 0.092 0.908
35 H 0.087 0.913
36 H 0.074 0.926
37 H 0.073 0.927
38 H 0.098 0.902
39 H 0.097 0.903
40 H 0.082 0.918
41 H 0.083 0.917
42 H 0.076 0.924
43 H 0.075 0.925
44 H 0.077 0.923
45 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.488 -23.658 -7.785 28.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.516 5.516
2 C -0.113 4.113
3 Si 0.681 3.319
4 H -0.192 1.192
5 H -0.199 1.199
6 H -0.159 1.159
7 C -0.669 4.669
8 H 0.106 0.894
9 S 0.085 5.915
10 C -0.266 4.266
11 C 0.351 3.649
12 O -0.389 6.389
13 N -0.389 5.389
14 C -0.005 4.005
15 C -0.118 4.118
16 C 0.002 3.998
17 C -0.142 4.142
18 C -0.022 4.022
19 N -0.355 5.355
20 C 0.319 3.681
21 O -0.414 6.414
22 C -0.175 4.175
23 C -0.178 4.178
24 C 0.007 3.993
25 F -0.199 7.199
26 C 0.003 3.997
27 H 0.081 0.919
28 H 0.114 0.886
29 H 0.114 0.886
30 H 0.107 0.893
31 H 0.102 0.898
32 H 0.102 0.898
33 H 0.105 0.895
34 H 0.110 0.890
35 H 0.105 0.895
36 H 0.092 0.908
37 H 0.091 0.909
38 H 0.117 0.883
39 H 0.115 0.885
40 H 0.101 0.899
41 H 0.102 0.898
42 H 0.094 0.906
43 H 0.093 0.907
44 H 0.096 0.904
45 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 15.492 -22.314 -7.211 28.105
hybrid contribution -0.911 -0.270 -0.013 0.950
sum 14.581 -22.584 -7.223 27.835
Atomic orbital electron populations
1.69935 1.05904 1.27810 1.47918 1.24712 0.94460 0.98972 0.93142
0.86735 0.81900 0.83270 0.79954 1.19174 1.19878 1.15936 1.22294
0.88136 0.97546 1.58962 0.89388 1.84803 1.09442 0.99811 1.97432
1.23211 0.93390 1.04283 1.05695 1.19901 0.90411 0.79817 0.74787
1.90721 1.58946 1.40718 1.48505 1.49718 1.09228 1.04269 1.75659
1.22815 0.96532 0.80399 1.00770 1.22250 0.98479 0.94298 0.96728
1.22557 0.87786 0.88784 1.00649 1.22223 1.03964 0.95020 0.92952
1.22175 1.01282 0.91413 0.87373 1.48586 1.64679 1.06713 1.15511
1.20253 0.77949 0.80529 0.89386 1.90744 1.51113 1.70452 1.29109
1.21535 1.03345 0.94968 0.97633 1.21931 1.04070 0.92988 0.98817
1.21994 1.02685 0.77021 0.97630 1.92782 1.97822 1.36500 1.92772
1.21830 0.99003 0.86168 0.92689 0.91895 0.88585 0.88640 0.89296
0.89819 0.89830 0.89474 0.88992 0.89457 0.90790 0.90865 0.88324
0.88477 0.89926 0.89807 0.90602 0.90701 0.90448 0.89640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -26.24 13.97 55.49 0.78 -25.47 16
2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16
3 Si 0.86 21.55 27.74 -169.99 -4.71 16.83 16
4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16
7 C -0.52 -14.86 10.04 30.94 0.31 -14.54 16
8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16
9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16
10 C -0.12 -2.21 5.98 36.01 0.22 -2.00 16
11 C 0.56 9.95 8.09 -10.98 -0.09 9.86 16
12 O -0.51 -11.14 16.63 5.56 0.09 -11.05 16
13 N -0.65 -8.13 3.70 -185.72 -0.69 -8.81 16
14 C 0.12 1.03 7.78 -7.33 -0.06 0.97 16
15 C -0.12 -0.79 1.06 -155.21 -0.16 -0.95 16
16 C 0.13 1.13 8.03 -7.47 -0.06 1.07 16
17 C -0.10 -0.57 6.41 -25.61 -0.16 -0.73 16
18 C 0.10 0.43 6.50 -2.83 -0.02 0.41 16
19 N -0.62 -4.08 3.34 -170.98 -0.57 -4.65 16
20 C 0.53 4.26 7.85 -10.99 -0.09 4.18 16
21 O -0.54 -6.56 16.26 5.56 0.09 -6.47 16
22 C -0.13 -0.59 4.89 -27.88 -0.14 -0.73 16
23 C -0.14 -0.80 4.96 -26.73 -0.13 -0.94 16
24 C 0.06 0.28 7.55 37.15 0.28 0.56 16
25 F -0.22 -1.81 17.36 2.25 0.04 -1.77 16
26 C 0.13 0.84 6.36 -3.22 -0.02 0.82 16
27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
28 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16
29 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16
30 H 0.09 0.70 8.06 -51.93 -0.42 0.29 16
31 H 0.08 0.69 8.14 -51.94 -0.42 0.27 16
32 H 0.08 0.76 8.13 -51.92 -0.42 0.34 16
33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16
35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16
37 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16
38 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16
39 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16
40 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16
41 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16
42 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16
43 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16
44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16
45 H 0.09 0.65 7.94 -51.93 -0.41 0.24 16
LS Contribution 391.94 15.07 5.91 5.91
Total: -1.00 -37.15 391.94 -8.44 -45.59
By element:
Atomic # 1 Polarization: 1.95 SS G_CDS: -7.16 Total: -5.21 kcal
Atomic # 6 Polarization: 0.87 SS G_CDS: -0.22 Total: 0.65 kcal
Atomic # 7 Polarization: -38.45 SS G_CDS: -0.48 Total: -38.93 kcal
Atomic # 8 Polarization: -17.70 SS G_CDS: 0.18 Total: -17.52 kcal
Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal
Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -37.15 -8.44 -45.59 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001488813695.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.122 kcal
(2) G-P(sol) polarization free energy of solvation -37.145 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.711 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds