Wall clock time and date at job start Sat Apr 11 2020 07:04:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86803 * 120.00249 * 2 1
4 4 H 1.48503 * 109.46889 * 270.00001 * 3 2 1
5 5 H 1.48494 * 109.47191 * 29.99950 * 3 2 1
6 6 H 1.48501 * 109.46989 * 150.00556 * 3 2 1
7 7 C 1.38803 * 119.99746 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00074 * 359.97438 * 7 2 1
9 9 S 1.76199 * 119.99949 * 179.97438 * 7 2 1
10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2
11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7
12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9
13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9
14 14 C 1.47389 * 135.85436 * 359.62880 * 13 11 10
15 15 C 1.52072 * 87.40867 * 154.39038 * 14 13 11
16 16 C 1.47390 * 135.85067 * 180.02562 * 13 11 10
17 17 C 1.53510 * 117.20967 * 267.27762 * 15 14 13
18 18 C 1.54631 * 102.70229 * 262.93125 * 17 15 14
19 19 N 1.47152 * 107.37719 * 339.38485 * 18 17 15
20 20 C 1.34771 * 125.58017 * 179.12317 * 19 18 17
21 21 O 1.21279 * 120.00243 * 179.97438 * 20 19 18
22 22 C 1.50705 * 120.00176 * 359.97271 * 20 19 18
23 23 C 1.53004 * 109.47412 * 180.02562 * 22 20 19
24 24 C 1.52994 * 109.47152 * 180.02562 * 23 22 20
25 25 F 1.39903 * 109.47051 * 180.02562 * 24 23 22
26 26 C 1.47752 * 108.83933 * 359.08945 * 19 18 17
27 27 H 0.97005 * 119.99717 * 359.97438 * 1 2 3
28 28 H 1.09005 * 109.46889 * 299.99975 * 10 9 7
29 29 H 1.09000 * 109.47231 * 59.99947 * 10 9 7
30 30 H 1.09003 * 113.53685 * 268.99497 * 14 13 11
31 31 H 1.08989 * 113.54394 * 39.67574 * 14 13 11
32 32 H 1.09008 * 113.54239 * 320.31810 * 16 13 11
33 33 H 1.09003 * 113.54833 * 90.92604 * 16 13 11
34 34 H 1.08998 * 110.76752 * 21.23193 * 17 15 14
35 35 H 1.08998 * 110.76720 * 144.63238 * 17 15 14
36 36 H 1.08997 * 109.86875 * 98.83649 * 18 17 15
37 37 H 1.09002 * 109.86499 * 219.80520 * 18 17 15
38 38 H 1.08995 * 109.47118 * 300.00503 * 22 20 19
39 39 H 1.09003 * 109.46970 * 59.99958 * 22 20 19
40 40 H 1.09001 * 109.46595 * 300.00329 * 23 22 20
41 41 H 1.09002 * 109.46690 * 59.99882 * 23 22 20
42 42 H 1.09004 * 109.46919 * 299.99831 * 24 23 22
43 43 H 1.09003 * 109.47455 * 59.99671 * 24 23 22
44 44 H 1.09001 * 110.40239 * 263.50151 * 26 19 18
45 45 H 1.08991 * 110.40598 * 141.08126 * 26 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4479 2.6527 0.7000
6 1 3.5479 1.4400 0.6999
7 6 2.0102 -1.2021 -0.0005
8 1 1.4702 -2.1374 -0.0005
9 16 3.7722 -1.2022 -0.0012
10 6 4.0865 -2.9847 -0.0009
11 6 5.5730 -3.2327 -0.0008
12 8 6.3439 -2.2965 -0.0014
13 7 6.0455 -4.4949 -0.0011
14 6 5.4549 -5.8453 0.0050
15 6 6.7337 -6.3326 -0.6582
16 6 7.3777 -5.1254 -0.0007
17 6 6.7531 -6.3841 -2.1924
18 6 6.4173 -7.8645 -2.4871
19 7 6.7223 -8.6348 -1.2710
20 6 6.5488 -9.9627 -1.1198
21 8 6.8355 -10.4960 -0.0689
22 6 5.9984 -10.7850 -2.2564
23 6 5.9012 -12.2500 -1.8259
24 6 5.3430 -13.0849 -2.9801
25 9 5.2536 -14.4243 -2.5861
26 6 7.2507 -7.7143 -0.2431
27 1 -0.4850 0.8401 0.0004
28 1 3.6439 -3.4315 0.8894
29 1 3.6432 -3.4319 -0.8906
30 1 5.3025 -6.2492 1.0060
31 1 4.5721 -5.9373 -0.6275
32 1 8.1006 -4.6162 -0.6382
33 1 7.7639 -5.3268 0.9985
34 1 5.9926 -5.7248 -2.6108
35 1 7.7410 -6.1284 -2.5752
36 1 5.3599 -7.9628 -2.7324
37 1 7.0250 -8.2238 -3.3176
38 1 5.0071 -10.4186 -2.5232
39 1 6.6604 -10.7025 -3.1184
40 1 6.8923 -12.6166 -1.5588
41 1 5.2389 -12.3322 -0.9640
42 1 4.3519 -12.7182 -3.2475
43 1 6.0055 -13.0026 -3.8417
44 1 8.3406 -7.7285 -0.2445
45 1 6.8676 -7.9835 0.7411
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001488813695.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:04:37
Heat of formation + Delta-G solvation = -112.827298 kcal
Electronic energy + Delta-G solvation = -26931.552555 eV
Core-core repulsion = 22796.701158 eV
Total energy + Delta-G solvation = -4134.851398 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 344.136 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-48.53044 -42.24564 -40.65243 -39.41348 -37.14697 -34.97645 -34.69062 -32.70008
-31.28613 -30.21920 -28.52126 -27.86955 -27.23843 -26.46237 -24.19146 -22.82818
-21.15420 -20.39549 -19.88693 -19.39455 -18.17582 -17.89913 -17.65248 -17.27582
-17.12886 -17.03523 -16.83896 -16.56528 -16.07386 -15.84258 -15.60962 -15.46493
-15.31866 -14.91961 -14.45853 -14.33446 -14.30219 -13.85360 -13.67687 -13.53854
-13.47752 -13.34106 -13.02797 -12.87735 -12.73117 -12.54598 -12.40576 -12.25698
-12.11695 -11.96175 -11.87773 -11.53162 -11.49051 -11.18509 -11.02677 -10.89503
-10.57008 -9.84144 -9.64893 -9.02983 -8.53056 -6.24712 0.92183 1.30415
1.40539 1.48414 1.51439 1.63385 1.88154 1.96236 2.23660 2.64371
2.85144 3.06501 3.24726 3.43734 3.60167 3.68972 3.77711 3.86390
3.90407 4.14243 4.18484 4.28537 4.31820 4.36050 4.40458 4.42853
4.44965 4.50674 4.56173 4.62730 4.67018 4.73416 4.78143 4.80195
4.82388 4.93963 5.02330 5.10742 5.19164 5.26300 5.31715 5.69080
6.09523 6.49741 6.52835 6.91880 7.01678 7.14685 8.59233
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.018263 B = 0.001890 C = 0.001766
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1532.777971 B =14814.713540 C =15850.921179
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.046 3.954
3 Si 0.914 3.086
4 H -0.260 1.260
5 H -0.259 1.259
6 H -0.238 1.238
7 C -0.529 4.529
8 H 0.062 0.938
9 S -0.174 6.174
10 C -0.101 4.101
11 C 0.563 3.437
12 O -0.564 6.564
13 N -0.647 5.647
14 C 0.112 3.888
15 C -0.095 4.095
16 C 0.121 3.879
17 C -0.104 4.104
18 C 0.101 3.899
19 N -0.619 5.619
20 C 0.522 3.478
21 O -0.590 6.590
22 C -0.126 4.126
23 C -0.137 4.137
24 C 0.058 3.942
25 F -0.242 7.242
26 C 0.127 3.873
27 H 0.277 0.723
28 H 0.105 0.895
29 H 0.111 0.889
30 H 0.100 0.900
31 H 0.093 0.907
32 H 0.085 0.915
33 H 0.101 0.899
34 H 0.086 0.914
35 H 0.098 0.902
36 H 0.089 0.911
37 H 0.099 0.901
38 H 0.123 0.877
39 H 0.128 0.872
40 H 0.063 0.937
41 H 0.060 0.940
42 H 0.097 0.903
43 H 0.101 0.899
44 H 0.086 0.914
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.583 -24.514 -9.531 30.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.159 4.159
3 Si 0.736 3.264
4 H -0.185 1.185
5 H -0.183 1.183
6 H -0.162 1.162
7 C -0.677 4.677
8 H 0.080 0.920
9 S 0.053 5.947
10 C -0.252 4.252
11 C 0.352 3.648
12 O -0.442 6.442
13 N -0.383 5.383
14 C -0.010 4.010
15 C -0.096 4.096
16 C -0.001 4.001
17 C -0.142 4.142
18 C -0.021 4.021
19 N -0.352 5.352
20 C 0.313 3.687
21 O -0.471 6.471
22 C -0.165 4.165
23 C -0.176 4.176
24 C 0.003 3.997
25 F -0.223 7.223
26 C 0.004 3.996
27 H 0.087 0.913
28 H 0.124 0.876
29 H 0.129 0.871
30 H 0.118 0.882
31 H 0.111 0.889
32 H 0.103 0.897
33 H 0.119 0.881
34 H 0.104 0.896
35 H 0.116 0.884
36 H 0.107 0.893
37 H 0.117 0.883
38 H 0.141 0.859
39 H 0.146 0.854
40 H 0.082 0.918
41 H 0.078 0.922
42 H 0.115 0.885
43 H 0.119 0.881
44 H 0.104 0.896
45 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 16.583 -23.217 -8.982 29.912
hybrid contribution -1.210 -0.193 0.542 1.340
sum 15.373 -23.410 -8.440 29.250
Atomic orbital electron populations
1.70012 1.07266 1.29061 1.48974 1.25559 0.95286 1.02241 0.92848
0.85872 0.80622 0.79600 0.80316 1.18488 1.18314 1.16204 1.22429
0.90094 0.96695 1.58455 0.91978 1.84715 1.06602 1.05803 1.97572
1.23153 0.95482 0.99590 1.06925 1.19458 0.89165 0.81112 0.75093
1.90696 1.59506 1.42675 1.51366 1.49657 1.11809 1.03803 1.73052
1.23139 0.97847 0.77959 1.02029 1.22025 0.96424 0.93469 0.97690
1.22853 0.86320 0.88956 1.01948 1.22277 1.04503 0.95954 0.91427
1.22347 1.02790 0.90030 0.86902 1.48664 1.63890 1.06504 1.16173
1.20923 0.77249 0.80936 0.89581 1.90726 1.53523 1.71503 1.31349
1.21561 1.05091 0.92965 0.96874 1.21855 1.02483 0.94530 0.98717
1.22237 1.04487 0.75302 0.97630 1.92732 1.97982 1.38551 1.93077
1.21764 0.99482 0.85869 0.92469 0.91318 0.87642 0.87077 0.88200
0.88908 0.89690 0.88064 0.89586 0.88396 0.89321 0.88320 0.85892
0.85450 0.91846 0.92161 0.88501 0.88133 0.89607 0.90770
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -55.18 13.97 21.65 0.30 -54.88 16
2 C 0.05 2.69 5.50 84.86 0.47 3.16 16
3 Si 0.91 44.55 27.74 68.60 1.90 46.45 16
4 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16
5 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16
6 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16
7 C -0.53 -30.55 10.04 67.96 0.68 -29.86 16
8 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16
9 S -0.17 -8.73 18.55 -56.49 -1.05 -9.77 16
10 C -0.10 -3.80 5.98 71.24 0.43 -3.38 16
11 C 0.56 19.47 8.09 87.66 0.71 20.18 16
12 O -0.56 -24.32 16.63 -3.04 -0.05 -24.38 16
13 N -0.65 -15.06 3.70 -859.88 -3.18 -18.24 16
14 C 0.11 1.68 7.78 83.76 0.65 2.34 16
15 C -0.09 -1.03 1.06 -52.62 -0.06 -1.09 16
16 C 0.12 1.92 8.03 83.67 0.67 2.59 16
17 C -0.10 -0.78 6.41 31.32 0.20 -0.58 16
18 C 0.10 0.44 6.50 86.81 0.56 1.01 16
19 N -0.62 -6.39 3.34 -813.26 -2.72 -9.11 16
20 C 0.52 7.42 7.85 87.66 0.69 8.11 16
21 O -0.59 -14.36 16.26 -3.03 -0.05 -14.41 16
22 C -0.13 -0.72 4.89 29.85 0.15 -0.57 16
23 C -0.14 -1.43 4.96 30.59 0.15 -1.28 16
24 C 0.06 0.40 7.55 71.98 0.54 0.95 16
25 F -0.24 -3.86 17.36 44.97 0.78 -3.08 16
26 C 0.13 1.42 6.36 86.23 0.55 1.97 16
27 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16
28 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16
29 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16
30 H 0.10 1.36 8.06 -2.39 -0.02 1.34 16
31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
32 H 0.08 1.37 8.13 -2.38 -0.02 1.35 16
33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
34 H 0.09 0.83 8.07 -2.39 -0.02 0.81 16
35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16
36 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16
37 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16
38 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16
39 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16
40 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16
41 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16
42 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16
43 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16
44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
45 H 0.07 1.03 7.94 -2.39 -0.02 1.01 16
Total: -1.00 -83.86 391.94 3.28 -80.58
By element:
Atomic # 1 Polarization: 2.36 SS G_CDS: 0.94 Total: 3.30 kcal
Atomic # 6 Polarization: -2.86 SS G_CDS: 6.39 Total: 3.53 kcal
Atomic # 7 Polarization: -76.63 SS G_CDS: -5.59 Total: -82.23 kcal
Atomic # 8 Polarization: -38.68 SS G_CDS: -0.10 Total: -38.78 kcal
Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.08 kcal
Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal
Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.77 kcal
Total: -83.86 3.28 -80.58 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001488813695.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.243 kcal
(2) G-P(sol) polarization free energy of solvation -83.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.107 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.584 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.827 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds