Wall clock time and date at job start Sat Apr 11 2020 07:06:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86799 * 119.99970 * 2 1
4 4 H 1.48501 * 109.47086 * 274.96268 * 3 2 1
5 5 H 1.48501 * 109.47278 * 34.96541 * 3 2 1
6 6 H 1.48499 * 109.47060 * 154.95992 * 3 2 1
7 7 C 1.37880 * 119.99695 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99302 * 187.09978 * 7 2 1
9 9 C 1.50690 * 120.00475 * 7.10161 * 7 2 1
10 10 O 1.42902 * 113.38533 * 51.83656 * 9 7 2
11 11 C 1.53515 * 114.17449 * 184.91931 * 9 7 2
12 12 N 1.47476 * 87.93363 * 139.66894 * 11 9 7
13 13 C 1.46892 * 111.00177 * 221.29774 * 12 11 9
14 14 H 1.09001 * 109.47435 * 50.97785 * 13 12 11
15 15 C 1.50702 * 109.47618 * 170.97880 * 13 12 11
16 16 N 1.34775 * 120.00771 * 204.44717 * 15 13 12
17 17 O 1.21289 * 119.99511 * 24.45000 * 15 13 12
18 18 C 1.50697 * 109.47301 * 290.98237 * 13 12 11
19 19 C 1.38312 * 119.88348 * 139.99679 * 18 13 12
20 20 C 1.38033 * 120.11699 * 180.02562 * 19 18 13
21 21 C 1.39301 * 119.88335 * 0.02562 * 20 19 18
22 22 C 1.48455 * 120.12019 * 179.72634 * 21 20 19
23 23 N 1.34051 * 126.67529 * 0.02562 * 22 21 20
24 24 N 1.28986 * 107.26949 * 179.97438 * 23 22 21
25 25 N 1.28725 * 108.94606 * 359.97438 * 24 23 22
26 26 H 0.96996 * 125.34629 * 179.97438 * 25 24 23
27 27 N 1.28875 * 109.31362 * 359.76666 * 25 24 23
28 28 C 1.39302 * 119.76491 * 359.97438 * 21 20 19
29 29 C 1.38033 * 119.88225 * 0.02562 * 28 21 20
30 30 C 1.47476 * 87.83944 * 332.99071 * 12 11 9
31 31 H 0.96996 * 119.99944 * 0.02562 * 1 2 3
32 32 H 0.96706 * 113.99984 * 307.44564 * 10 9 7
33 33 H 1.08997 * 113.46929 * 24.90163 * 11 9 7
34 34 H 1.09000 * 113.47289 * 254.43813 * 11 9 7
35 35 H 0.97000 * 119.99203 * 0.02562 * 16 15 13
36 36 H 0.96998 * 120.00627 * 179.97438 * 16 15 13
37 37 H 1.07996 * 119.94653 * 359.97438 * 19 18 13
38 38 H 1.08004 * 120.05942 * 180.02562 * 20 19 18
39 39 H 1.07998 * 120.06084 * 179.97438 * 28 21 20
40 40 H 1.07991 * 119.94441 * 179.97438 * 29 28 21
41 41 H 1.08998 * 113.48350 * 141.77475 * 30 12 11
42 42 H 1.09000 * 113.47671 * 272.24615 * 30 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.3917 2.1070 -1.3948
5 1 1.5030 2.6201 0.8024
6 1 3.5952 1.4122 0.5926
7 6 2.0045 -1.1941 0.0005
8 1 3.0783 -1.1976 0.1162
9 6 1.2597 -2.4942 -0.1602
10 8 0.3906 -2.5135 -1.2944
11 6 2.1400 -3.7443 -0.0215
12 7 1.0394 -4.3701 0.7347
13 6 1.5533 -5.1214 1.8876
14 1 2.2241 -4.4858 2.4658
15 6 0.4020 -5.5581 2.7565
16 7 0.6030 -5.8104 4.0651
17 8 -0.7056 -5.6825 2.2780
18 6 2.3047 -6.3342 1.4024
19 6 3.4784 -6.7137 2.0281
20 6 4.1707 -7.8235 1.5873
21 6 3.6857 -8.5614 0.5099
22 6 4.4293 -9.7523 0.0276
23 7 5.5753 -10.2368 0.5265
24 7 5.8875 -11.2760 -0.1710
25 7 4.9900 -11.4571 -1.0758
26 1 4.9907 -12.1716 -1.7318
27 7 4.0879 -10.5427 -0.9704
28 6 2.5031 -8.1748 -0.1167
29 6 1.8186 -7.0634 0.3322
30 6 0.6168 -3.0145 1.1332
31 1 -0.4850 0.8400 -0.0004
32 1 -0.2228 -1.7669 -1.3326
33 1 3.0375 -3.5792 0.5745
34 1 2.3486 -4.2360 -0.9717
35 1 1.4887 -5.7105 4.4477
36 1 -0.1382 -6.0911 4.6243
37 1 3.8542 -6.1403 2.8625
38 1 5.0869 -8.1192 2.0768
39 1 2.1230 -8.7431 -0.9526
40 1 0.9019 -6.7625 -0.1531
41 1 -0.4654 -2.8876 1.1616
42 1 1.1080 -2.6547 2.0373
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001581857714.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:17
Heat of formation + Delta-G solvation = 82.076299 kcal
Electronic energy + Delta-G solvation = -29537.810610 eV
Core-core repulsion = 25328.179628 eV
Total energy + Delta-G solvation = -4209.630982 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 344.138 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-45.46787 -41.84430 -40.00736 -39.70577 -36.36949 -35.43350 -34.87963 -34.48642
-34.14744 -32.68435 -31.98170 -29.92439 -27.96930 -26.72132 -25.74702 -25.31475
-24.46998 -23.38614 -22.49651 -21.17706 -20.52132 -20.17239 -19.25562 -18.37745
-18.14630 -17.92363 -17.70613 -17.12923 -16.88792 -16.63156 -16.02240 -15.56430
-15.44813 -15.25807 -15.20400 -14.91392 -14.39231 -14.28869 -13.97406 -13.85842
-13.78821 -13.48593 -13.38900 -13.18673 -12.78280 -12.63185 -12.41650 -12.36227
-12.29767 -12.22234 -12.04549 -11.92756 -11.87354 -11.07567 -10.95382 -10.65561
-10.63271 -10.09851 -9.92177 -9.65069 -9.52914 -8.21107 -6.37508 -0.36608
0.16059 0.43940 1.24706 1.41860 1.44393 1.47915 1.56895 1.64765
2.38741 2.45911 2.65276 2.78411 3.00279 3.15134 3.27079 3.57656
3.85218 4.00434 4.04317 4.07640 4.16484 4.20584 4.32693 4.40467
4.43606 4.48742 4.55376 4.64347 4.83557 4.94170 5.11877 5.18966
5.26481 5.37172 5.40671 5.47149 5.58256 5.61992 5.75777 5.87608
5.92283 6.02486 6.21215 6.53078 6.68606 7.10682 7.35418 7.38871
7.43266 8.84643
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.014444 B = 0.002743 C = 0.002523
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1938.105210 B =10206.812579 C =11096.882378
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C 0.028 3.972
3 Si 0.964 3.036
4 H -0.279 1.279
5 H -0.284 1.284
6 H -0.263 1.263
7 C -0.555 4.555
8 H 0.071 0.929
9 C 0.221 3.779
10 O -0.578 6.578
11 C 0.026 3.974
12 N -0.451 5.451
13 C 0.065 3.935
14 H 0.098 0.902
15 C 0.526 3.474
16 N -0.832 5.832
17 O -0.570 6.570
18 C -0.062 4.062
19 C -0.101 4.101
20 C -0.072 4.072
21 C -0.027 4.027
22 C 0.213 3.787
23 N -0.288 5.288
24 N -0.055 5.055
25 N -0.201 5.201
26 H 0.494 0.506
27 N -0.300 5.300
28 C -0.083 4.083
29 C -0.099 4.099
30 C -0.001 4.001
31 H 0.270 0.730
32 H 0.377 0.623
33 H 0.088 0.912
34 H 0.069 0.931
35 H 0.418 0.582
36 H 0.409 0.591
37 H 0.167 0.833
38 H 0.155 0.845
39 H 0.136 0.864
40 H 0.115 0.885
41 H 0.038 0.962
42 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.836 -19.071 6.139 22.777
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.555 5.555
2 C -0.173 4.173
3 Si 0.789 3.211
4 H -0.205 1.205
5 H -0.210 1.210
6 H -0.187 1.187
7 C -0.593 4.593
8 H 0.089 0.911
9 C 0.181 3.819
10 O -0.386 6.386
11 C -0.102 4.102
12 N -0.174 5.174
13 C -0.047 4.047
14 H 0.116 0.884
15 C 0.310 3.690
16 N -0.397 5.397
17 O -0.447 6.447
18 C -0.064 4.064
19 C -0.119 4.119
20 C -0.092 4.092
21 C -0.030 4.030
22 C -0.067 4.067
23 N -0.160 5.160
24 N -0.050 5.050
25 N -0.052 5.052
26 H 0.353 0.647
27 N -0.152 5.152
28 C -0.103 4.103
29 C -0.117 4.117
30 C -0.130 4.130
31 H 0.080 0.920
32 H 0.228 0.772
33 H 0.106 0.894
34 H 0.087 0.913
35 H 0.249 0.751
36 H 0.241 0.759
37 H 0.184 0.816
38 H 0.173 0.827
39 H 0.154 0.846
40 H 0.133 0.867
41 H 0.057 0.943
42 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 10.417 -20.508 5.252 23.594
hybrid contribution -0.266 1.751 0.289 1.795
sum 10.152 -18.756 5.540 22.035
Atomic orbital electron populations
1.69787 1.07282 1.28422 1.50030 1.25813 0.95682 1.02693 0.93100
0.85458 0.78948 0.78693 0.77991 1.20503 1.20960 1.18674 1.21774
0.94561 0.91508 1.51426 0.91133 1.19712 0.87440 0.92137 0.82658
1.86062 1.53536 1.51856 1.47160 1.23906 0.94026 0.93777 0.98495
1.68964 1.22053 1.12048 1.14351 1.21274 0.94079 0.95598 0.93734
0.88406 1.20411 0.89064 0.76057 0.83498 1.43579 1.16254 1.71108
1.08779 1.90732 1.26848 1.52504 1.74628 1.19579 0.95604 0.94655
0.96565 1.21232 0.93042 0.96898 1.00736 1.21275 1.00031 0.93555
0.94329 1.17380 0.94916 0.92086 0.98660 1.23758 0.92777 0.97799
0.92326 1.76050 1.12905 1.04822 1.22249 1.78830 1.14719 1.12409
0.99035 1.47778 1.11503 1.21663 1.24232 0.64685 1.74941 1.16844
1.02396 1.21055 1.21144 0.93570 0.96147 0.99434 1.20973 1.00052
0.94274 0.96418 1.24365 0.99462 0.88306 1.00865 0.92045 0.77235
0.89432 0.91278 0.75061 0.75852 0.81553 0.82698 0.84591 0.86681
0.94313 0.91758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -49.55 11.60 21.45 0.25 -49.30 16
2 C 0.03 1.44 5.34 84.66 0.45 1.89 16
3 Si 0.96 40.83 29.54 68.60 2.03 42.85 16
4 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16
5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16
6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16
7 C -0.55 -28.68 8.65 25.60 0.22 -28.46 16
8 H 0.07 3.50 7.82 -2.91 -0.02 3.47 16
9 C 0.22 11.07 1.41 -11.20 -0.02 11.06 16
10 O -0.58 -31.77 13.51 -148.98 -2.01 -33.79 16
11 C 0.03 1.09 6.54 83.58 0.55 1.64 16
12 N -0.45 -18.38 4.98 -911.70 -4.54 -22.92 16
13 C 0.07 2.00 1.66 43.42 0.07 2.07 16
14 H 0.10 2.50 7.42 -2.39 -0.02 2.49 16
15 C 0.53 16.57 6.89 87.66 0.60 17.17 16
16 N -0.83 -16.14 8.87 -173.53 -1.54 -17.68 16
17 O -0.57 -24.16 17.44 -3.06 -0.05 -24.21 16
18 C -0.06 -1.65 4.34 -19.83 -0.09 -1.73 16
19 C -0.10 -1.93 9.65 22.24 0.21 -1.71 16
20 C -0.07 -1.40 9.70 22.48 0.22 -1.18 16
21 C -0.03 -0.62 5.88 -20.04 -0.12 -0.74 16
22 C 0.21 4.80 7.94 137.38 1.09 5.89 16
23 N -0.29 -6.45 12.23 -52.19 -0.64 -7.09 16
24 N -0.05 -1.01 13.47 37.02 0.50 -0.51 16
25 N -0.20 -2.69 7.90 37.02 0.29 -2.40 16
26 H 0.49 1.55 8.96 -347.55 -3.12 -1.56 16
27 N -0.30 -5.89 12.08 -52.13 -0.63 -6.52 16
28 C -0.08 -2.10 9.70 22.48 0.22 -1.88 16
29 C -0.10 -2.91 9.27 22.24 0.21 -2.71 16
30 C 0.00 -0.03 6.74 83.58 0.56 0.54 16
31 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16
32 H 0.38 21.24 7.06 -74.05 -0.52 20.72 16
33 H 0.09 3.19 7.74 -2.39 -0.02 3.17 16
34 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16
35 H 0.42 4.83 8.83 -92.71 -0.82 4.02 16
36 H 0.41 6.92 8.93 -92.71 -0.83 6.09 16
37 H 0.17 1.94 8.03 -2.91 -0.02 1.92 16
38 H 0.16 2.43 7.89 -2.91 -0.02 2.41 16
39 H 0.14 3.22 7.88 -2.91 -0.02 3.19 16
40 H 0.12 4.08 7.71 -2.92 -0.02 4.05 16
41 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16
42 H 0.06 2.84 7.64 -2.39 -0.02 2.82 16
Total: -1.00 -74.75 367.16 -6.31 -81.06
By element:
Atomic # 1 Polarization: 42.80 SS G_CDS: -4.14 Total: 38.66 kcal
Atomic # 6 Polarization: -2.34 SS G_CDS: 4.19 Total: 1.84 kcal
Atomic # 7 Polarization: -100.11 SS G_CDS: -6.31 Total: -106.41 kcal
Atomic # 8 Polarization: -55.94 SS G_CDS: -2.07 Total: -58.00 kcal
Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal
Total: -74.75 -6.31 -81.06 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001581857714.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 163.135 kcal
(2) G-P(sol) polarization free energy of solvation -74.753 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds