Wall clock time and date at job start Sat Apr 11 2020 07:05:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86797 * 120.00020 * 2 1
4 4 H 1.48501 * 109.46897 * 239.99951 * 3 2 1
5 5 H 1.48494 * 109.47120 * 359.97438 * 3 2 1
6 6 H 1.48505 * 109.47195 * 120.00534 * 3 2 1
7 7 C 1.38800 * 119.99752 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99946 * 179.97438 * 7 2 1
9 9 S 1.76199 * 120.00400 * 0.02562 * 7 2 1
10 10 C 1.80997 * 100.00180 * 179.97438 * 9 7 2
11 11 C 1.50704 * 109.47223 * 180.02562 * 10 9 7
12 12 O 1.21281 * 119.99898 * 359.97438 * 11 10 9
13 13 N 1.34775 * 120.00318 * 179.97438 * 11 10 9
14 14 C 1.46500 * 120.00125 * 175.50501 * 13 11 10
15 15 C 1.52997 * 115.54854 * 294.27641 * 14 13 11
16 16 N 1.46492 * 109.47382 * 278.32680 * 15 14 13
17 17 C 1.34774 * 120.00213 * 175.26457 * 16 15 14
18 18 O 1.21286 * 119.99786 * 0.02562 * 17 16 15
19 19 C 1.50698 * 120.00151 * 179.97438 * 17 16 15
20 20 H 1.09002 * 110.43380 * 57.46081 * 19 17 16
21 21 C 1.55235 * 110.58280 * 294.87521 * 19 17 16
22 22 C 1.54889 * 102.58900 * 203.33892 * 21 19 17
23 23 C 1.54269 * 104.31575 * 37.92958 * 22 21 19
24 24 H 1.09003 * 110.02938 * 95.65540 * 23 22 21
25 25 F 1.39889 * 110.03864 * 217.04086 * 23 22 21
26 26 C 1.53876 * 106.59690 * 336.32882 * 23 22 21
27 27 C 1.53001 * 117.49756 * 79.94942 * 14 13 11
28 28 C 1.53000 * 117.49772 * 148.60919 * 14 13 11
29 29 H 0.96996 * 120.00312 * 359.97438 * 1 2 3
30 30 H 1.08995 * 109.47393 * 59.99690 * 10 9 7
31 31 H 1.09001 * 109.47166 * 299.99680 * 10 9 7
32 32 H 0.96996 * 119.99881 * 355.50457 * 13 11 10
33 33 H 1.09004 * 109.46729 * 158.32476 * 15 14 13
34 34 H 1.08998 * 109.47083 * 38.33057 * 15 14 13
35 35 H 0.97006 * 120.00329 * 355.26255 * 16 15 14
36 36 H 1.08995 * 110.89589 * 85.04708 * 21 19 17
37 37 H 1.08996 * 110.76770 * 321.57080 * 21 19 17
38 38 H 1.09009 * 110.48774 * 279.19024 * 22 21 19
39 39 H 1.08999 * 110.49196 * 156.67715 * 22 21 19
40 40 H 1.08995 * 110.03275 * 119.27864 * 26 23 22
41 41 H 1.09001 * 110.02959 * 240.66700 * 26 23 22
42 42 H 1.08994 * 117.49717 * 215.00288 * 27 14 13
43 43 H 1.08996 * 117.49765 * 0.02562 * 27 14 13
44 44 H 1.09002 * 117.49727 * 359.97438 * 28 14 13
45 45 H 1.08992 * 117.50004 * 144.99641 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1040 1.6963 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1042 1.6963 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 16 1.1293 -2.7280 0.0005
10 6 2.5158 -3.8915 0.0005
11 6 1.9873 -5.3028 -0.0001
12 8 0.7910 -5.5024 0.0000
13 7 2.8440 -6.3432 -0.0007
14 6 2.3333 -7.7127 0.0981
15 6 1.6487 -8.0680 1.4195
16 7 2.6639 -8.4066 2.4198
17 6 2.2981 -8.6614 3.6917
18 8 1.1283 -8.6107 4.0079
19 6 3.3424 -9.0104 4.7206
20 1 4.0871 -8.2175 4.7911
21 6 4.0205 -10.3628 4.3730
22 6 4.5540 -10.8362 5.7479
23 6 3.4558 -10.4185 6.7475
24 1 2.7831 -11.2556 6.9345
25 9 4.0362 -9.9935 7.9473
26 6 2.6854 -9.2576 6.0944
27 6 1.7845 -8.3558 -1.1772
28 6 3.1277 -8.8154 -0.6048
29 1 -0.4850 0.8400 0.0004
30 1 3.1244 -3.7314 0.8904
31 1 3.1244 -3.7314 -0.8895
32 1 3.7988 -6.1852 -0.0666
33 1 0.9883 -8.9219 1.2684
34 1 1.0660 -7.2151 1.7675
35 1 3.5995 -8.4476 2.1668
36 1 4.8405 -10.2171 3.6698
37 1 3.2918 -11.0700 3.9770
38 1 5.4944 -10.3382 5.9843
39 1 4.6843 -11.9184 5.7545
40 1 1.6384 -9.5311 5.9637
41 1 2.7632 -8.3633 6.7126
42 1 0.9357 -9.0318 -1.0748
43 1 1.8038 -7.7600 -2.0897
44 1 4.0301 -8.5217 -1.1410
45 1 3.1626 -9.7938 -0.1258
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001739034517.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:52
Heat of formation + Delta-G solvation = -112.378398 kcal
Electronic energy + Delta-G solvation = -27217.783309 eV
Core-core repulsion = 23082.951377 eV
Total energy + Delta-G solvation = -4134.831932 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 344.136 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-47.93799 -40.47498 -39.60821 -37.56291 -36.95119 -34.36452 -32.81817 -32.44321
-29.84503 -29.12965 -28.92944 -26.82192 -25.50075 -23.03100 -22.43817 -21.47003
-21.16634 -20.15558 -19.57581 -18.04942 -17.85310 -16.92401 -16.58156 -16.40406
-16.22926 -15.68351 -15.45547 -14.93264 -14.90142 -14.81871 -14.59292 -14.25111
-14.03966 -13.86067 -13.72289 -13.36075 -12.90332 -12.76096 -12.46425 -12.28469
-12.13056 -12.05380 -11.81309 -11.69555 -11.33956 -11.18180 -11.07051 -11.06132
-11.03552 -10.94473 -10.80730 -10.62355 -9.96264 -9.84422 -9.48338 -9.20066
-9.08319 -8.98945 -8.26531 -6.52158 -6.22996 -3.94072 2.42763 2.78145
2.87375 3.00566 3.22201 3.24536 3.28089 3.51049 3.61914 3.84107
3.89970 4.15315 4.18699 4.28675 4.38851 4.56820 4.62550 4.67621
4.77679 4.87498 4.91105 4.97568 5.03090 5.12045 5.15218 5.26787
5.31331 5.33247 5.36342 5.45795 5.63887 5.65046 5.67767 5.80225
5.82795 5.84458 5.86441 5.87957 6.08516 6.20519 6.57620 7.26539
7.57111 7.60126 8.02204 8.33134 8.54603 9.22015 10.84348
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.011863 B = 0.002275 C = 0.002022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2359.693192 B =12306.439441 C =13846.423692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.074 3.926
3 Si 0.919 3.081
4 H -0.274 1.274
5 H -0.282 1.282
6 H -0.274 1.274
7 C -0.537 4.537
8 H 0.072 0.928
9 S -0.057 6.057
10 C -0.153 4.153
11 C 0.534 3.466
12 O -0.505 6.505
13 N -0.710 5.710
14 C 0.090 3.910
15 C 0.149 3.851
16 N -0.723 5.723
17 C 0.518 3.482
18 O -0.534 6.534
19 C -0.113 4.113
20 H 0.106 0.894
21 C -0.111 4.111
22 C -0.149 4.149
23 C 0.085 3.915
24 H 0.089 0.911
25 F -0.213 7.213
26 C -0.140 4.140
27 C -0.156 4.156
28 C -0.171 4.171
29 H 0.269 0.731
30 H 0.089 0.911
31 H 0.089 0.911
32 H 0.400 0.600
33 H 0.076 0.924
34 H 0.089 0.911
35 H 0.399 0.601
36 H 0.081 0.919
37 H 0.078 0.922
38 H 0.084 0.916
39 H 0.081 0.919
40 H 0.099 0.901
41 H 0.085 0.915
42 H 0.104 0.896
43 H 0.103 0.897
44 H 0.102 0.898
45 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.203 -25.201 5.391 28.956
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.502 5.502
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.199 1.199
5 H -0.208 1.208
6 H -0.199 1.199
7 C -0.685 4.685
8 H 0.090 0.910
9 S 0.169 5.831
10 C -0.304 4.304
11 C 0.321 3.679
12 O -0.377 6.377
13 N -0.365 5.365
14 C 0.001 3.999
15 C 0.025 3.975
16 N -0.375 5.375
17 C 0.304 3.696
18 O -0.410 6.410
19 C -0.135 4.135
20 H 0.124 0.876
21 C -0.149 4.149
22 C -0.186 4.186
23 C 0.049 3.951
24 H 0.107 0.893
25 F -0.194 7.194
26 C -0.178 4.178
27 C -0.195 4.195
28 C -0.209 4.209
29 H 0.079 0.921
30 H 0.107 0.893
31 H 0.107 0.893
32 H 0.235 0.765
33 H 0.095 0.905
34 H 0.107 0.893
35 H 0.233 0.767
36 H 0.100 0.900
37 H 0.096 0.904
38 H 0.103 0.897
39 H 0.099 0.901
40 H 0.118 0.882
41 H 0.104 0.896
42 H 0.122 0.878
43 H 0.122 0.878
44 H 0.120 0.880
45 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 10.155 -25.338 5.669 27.880
hybrid contribution 2.987 1.527 -0.175 3.359
sum 13.142 -23.811 5.494 27.746
Atomic orbital electron populations
1.70002 1.05950 1.27622 1.46635 1.24993 0.95033 0.99034 0.94506
0.86223 0.79242 0.81244 0.78783 1.19947 1.20781 1.19932 1.22817
0.94842 0.91669 1.59219 0.91006 1.85434 1.04651 0.96251 1.96716
1.23532 1.06729 0.95248 1.04859 1.20366 0.86607 0.86025 0.74939
1.90719 1.15211 1.85361 1.46422 1.45435 1.09861 1.03441 1.77721
1.20632 1.03509 0.82398 0.93359 1.21059 0.89775 1.01747 0.84905
1.45954 1.11004 1.71340 1.09178 1.20423 0.89855 0.76543 0.82770
1.90735 1.19304 1.51153 1.79797 1.22186 0.97293 0.99708 0.94299
0.87626 1.22502 1.00187 0.95004 0.97169 1.22981 0.98904 1.02381
0.94374 1.22272 0.94612 0.97459 0.80780 0.89292 1.92826 1.86249
1.91715 1.48586 1.22714 1.01578 0.98961 0.94552 1.23332 0.96713
1.02427 0.96997 1.23335 0.96574 0.97793 1.03207 0.92082 0.89251
0.89292 0.76536 0.90539 0.89262 0.76704 0.89998 0.90362 0.89739
0.90064 0.88239 0.89619 0.87798 0.87824 0.87969 0.87687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16
2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
3 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16
4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
7 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16
8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16
9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16
10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16
11 C 0.53 9.48 7.58 -10.98 -0.08 9.39 16
12 O -0.50 -11.02 15.02 5.56 0.08 -10.94 16
13 N -0.71 -8.51 5.45 -47.61 -0.26 -8.77 16
14 C 0.09 0.92 1.69 -131.82 -0.22 0.70 16
15 C 0.15 1.77 5.64 -4.05 -0.02 1.75 16
16 N -0.72 -6.60 5.50 -60.30 -0.33 -6.93 16
17 C 0.52 5.66 7.14 -10.99 -0.08 5.58 16
18 O -0.53 -8.32 15.42 5.55 0.09 -8.23 16
19 C -0.11 -0.85 3.25 -89.92 -0.29 -1.14 16
20 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16
21 C -0.11 -0.53 6.34 -24.55 -0.16 -0.69 16
22 C -0.15 -0.75 6.60 -25.07 -0.17 -0.91 16
23 C 0.09 0.60 4.68 -25.61 -0.12 0.48 16
24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
25 F -0.21 -2.06 17.05 2.25 0.04 -2.02 16
26 C -0.14 -1.20 6.03 -25.61 -0.15 -1.35 16
27 C -0.16 -1.50 10.11 -26.69 -0.27 -1.77 16
28 C -0.17 -1.13 10.00 -26.69 -0.27 -1.40 16
29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16
30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16
31 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16
32 H 0.40 3.54 8.83 -40.82 -0.36 3.18 16
33 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16
34 H 0.09 1.48 7.13 -51.93 -0.37 1.11 16
35 H 0.40 2.42 8.37 -40.82 -0.34 2.08 16
36 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16
37 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16
38 H 0.08 0.42 8.12 -51.92 -0.42 0.00 16
39 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16
40 H 0.10 1.00 6.85 -51.93 -0.36 0.64 16
41 H 0.09 0.79 8.02 -51.93 -0.42 0.37 16
42 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16
43 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16
44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16
LS Contribution 394.10 15.07 5.94 5.94
Total: -1.00 -36.85 394.10 -9.22 -46.07
By element:
Atomic # 1 Polarization: 9.66 SS G_CDS: -6.86 Total: 2.79 kcal
Atomic # 6 Polarization: -3.64 SS G_CDS: -1.41 Total: -5.05 kcal
Atomic # 7 Polarization: -41.29 SS G_CDS: 0.14 Total: -41.15 kcal
Atomic # 8 Polarization: -19.34 SS G_CDS: 0.17 Total: -19.17 kcal
Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal
Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -36.85 -9.22 -46.07 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001739034517.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.305 kcal
(2) G-P(sol) polarization free energy of solvation -36.851 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.155 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.074 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds