Wall clock time and date at job start Sat Apr 11 2020 07:05:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86797 * 120.00020 * 2 1
4 4 H 1.48501 * 109.46897 * 239.99951 * 3 2 1
5 5 H 1.48494 * 109.47120 * 359.97438 * 3 2 1
6 6 H 1.48505 * 109.47195 * 120.00534 * 3 2 1
7 7 C 1.38800 * 119.99752 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99946 * 179.97438 * 7 2 1
9 9 S 1.76199 * 120.00400 * 0.02562 * 7 2 1
10 10 C 1.80997 * 100.00180 * 179.97438 * 9 7 2
11 11 C 1.50704 * 109.47223 * 180.02562 * 10 9 7
12 12 O 1.21281 * 119.99898 * 359.97438 * 11 10 9
13 13 N 1.34775 * 120.00318 * 179.97438 * 11 10 9
14 14 C 1.46500 * 120.00125 * 175.50501 * 13 11 10
15 15 C 1.52997 * 115.54854 * 294.27641 * 14 13 11
16 16 N 1.46492 * 109.47382 * 278.32680 * 15 14 13
17 17 C 1.34774 * 120.00213 * 175.26457 * 16 15 14
18 18 O 1.21286 * 119.99786 * 0.02562 * 17 16 15
19 19 C 1.50698 * 120.00151 * 179.97438 * 17 16 15
20 20 H 1.09002 * 110.43380 * 57.46081 * 19 17 16
21 21 C 1.55235 * 110.58280 * 294.87521 * 19 17 16
22 22 C 1.54889 * 102.58900 * 203.33892 * 21 19 17
23 23 C 1.54269 * 104.31575 * 37.92958 * 22 21 19
24 24 H 1.09003 * 110.02938 * 95.65540 * 23 22 21
25 25 F 1.39889 * 110.03864 * 217.04086 * 23 22 21
26 26 C 1.53876 * 106.59690 * 336.32882 * 23 22 21
27 27 C 1.53001 * 117.49756 * 79.94942 * 14 13 11
28 28 C 1.53000 * 117.49772 * 148.60919 * 14 13 11
29 29 H 0.96996 * 120.00312 * 359.97438 * 1 2 3
30 30 H 1.08995 * 109.47393 * 59.99690 * 10 9 7
31 31 H 1.09001 * 109.47166 * 299.99680 * 10 9 7
32 32 H 0.96996 * 119.99881 * 355.50457 * 13 11 10
33 33 H 1.09004 * 109.46729 * 158.32476 * 15 14 13
34 34 H 1.08998 * 109.47083 * 38.33057 * 15 14 13
35 35 H 0.97006 * 120.00329 * 355.26255 * 16 15 14
36 36 H 1.08995 * 110.89589 * 85.04708 * 21 19 17
37 37 H 1.08996 * 110.76770 * 321.57080 * 21 19 17
38 38 H 1.09009 * 110.48774 * 279.19024 * 22 21 19
39 39 H 1.08999 * 110.49196 * 156.67715 * 22 21 19
40 40 H 1.08995 * 110.03275 * 119.27864 * 26 23 22
41 41 H 1.09001 * 110.02959 * 240.66700 * 26 23 22
42 42 H 1.08994 * 117.49717 * 215.00288 * 27 14 13
43 43 H 1.08996 * 117.49765 * 0.02562 * 27 14 13
44 44 H 1.09002 * 117.49727 * 359.97438 * 28 14 13
45 45 H 1.08992 * 117.50004 * 144.99641 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1040 1.6963 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1042 1.6963 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 16 1.1293 -2.7280 0.0005
10 6 2.5158 -3.8915 0.0005
11 6 1.9873 -5.3028 -0.0001
12 8 0.7910 -5.5024 0.0000
13 7 2.8440 -6.3432 -0.0007
14 6 2.3333 -7.7127 0.0981
15 6 1.6487 -8.0680 1.4195
16 7 2.6639 -8.4066 2.4198
17 6 2.2981 -8.6614 3.6917
18 8 1.1283 -8.6107 4.0079
19 6 3.3424 -9.0104 4.7206
20 1 4.0871 -8.2175 4.7911
21 6 4.0205 -10.3628 4.3730
22 6 4.5540 -10.8362 5.7479
23 6 3.4558 -10.4185 6.7475
24 1 2.7831 -11.2556 6.9345
25 9 4.0362 -9.9935 7.9473
26 6 2.6854 -9.2576 6.0944
27 6 1.7845 -8.3558 -1.1772
28 6 3.1277 -8.8154 -0.6048
29 1 -0.4850 0.8400 0.0004
30 1 3.1244 -3.7314 0.8904
31 1 3.1244 -3.7314 -0.8895
32 1 3.7988 -6.1852 -0.0666
33 1 0.9883 -8.9219 1.2684
34 1 1.0660 -7.2151 1.7675
35 1 3.5995 -8.4476 2.1668
36 1 4.8405 -10.2171 3.6698
37 1 3.2918 -11.0700 3.9770
38 1 5.4944 -10.3382 5.9843
39 1 4.6843 -11.9184 5.7545
40 1 1.6384 -9.5311 5.9637
41 1 2.7632 -8.3633 6.7126
42 1 0.9357 -9.0318 -1.0748
43 1 1.8038 -7.7600 -2.0897
44 1 4.0301 -8.5217 -1.1410
45 1 3.1626 -9.7938 -0.1258
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001739034517.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:51
Heat of formation + Delta-G solvation = -139.597209 kcal
Electronic energy + Delta-G solvation = -27218.963605 eV
Core-core repulsion = 23082.951377 eV
Total energy + Delta-G solvation = -4136.012228 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 344.136 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-48.60409 -41.40778 -40.69242 -38.60194 -37.66233 -35.30058 -34.60346 -34.01429
-30.62104 -30.38928 -29.59326 -27.73884 -27.56623 -23.75534 -23.20402 -22.48384
-21.70339 -21.08345 -20.54126 -19.85814 -18.77074 -17.81918 -17.69584 -17.29243
-17.04704 -16.89422 -16.64858 -16.46877 -16.08917 -15.95638 -15.58499 -15.34695
-14.89137 -14.80399 -14.58007 -14.52606 -14.35592 -13.86851 -13.56832 -13.50566
-13.18517 -12.97316 -12.87879 -12.64572 -12.63442 -12.42605 -12.25916 -11.93980
-11.79097 -11.77555 -11.72233 -11.49771 -11.47662 -11.14331 -10.96714 -10.77245
-10.29223 -10.18427 -10.06581 -8.68698 -8.35957 -6.14465 1.24161 1.42631
1.44684 1.54029 1.57341 1.59880 2.00932 2.14629 2.26416 2.80358
2.98089 3.28720 3.30281 3.35474 3.50247 3.60975 3.76484 3.82266
3.89057 4.00401 4.11802 4.24172 4.28294 4.28955 4.39468 4.44418
4.46375 4.49893 4.60499 4.69164 4.74962 4.82981 4.91772 5.00402
5.02605 5.14229 5.17958 5.20251 5.33909 5.36223 5.39618 5.53078
6.17818 6.48768 6.52895 7.04998 7.22561 7.26648 8.73021
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.011863 B = 0.002275 C = 0.002022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2359.693192 B =12306.439441 C =13846.423692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.012 3.988
3 Si 0.999 3.001
4 H -0.260 1.260
5 H -0.280 1.280
6 H -0.262 1.262
7 C -0.546 4.546
8 H 0.084 0.916
9 S -0.155 6.155
10 C -0.128 4.128
11 C 0.535 3.465
12 O -0.555 6.555
13 N -0.681 5.681
14 C 0.063 3.937
15 C 0.158 3.842
16 N -0.704 5.704
17 C 0.514 3.486
18 O -0.590 6.590
19 C -0.107 4.107
20 H 0.122 0.878
21 C -0.100 4.100
22 C -0.141 4.141
23 C 0.080 3.920
24 H 0.100 0.900
25 F -0.229 7.229
26 C -0.145 4.145
27 C -0.175 4.175
28 C -0.116 4.116
29 H 0.271 0.729
30 H 0.106 0.894
31 H 0.112 0.888
32 H 0.420 0.580
33 H 0.077 0.923
34 H 0.033 0.967
35 H 0.419 0.581
36 H 0.113 0.887
37 H 0.078 0.922
38 H 0.089 0.911
39 H 0.100 0.900
40 H 0.077 0.923
41 H 0.070 0.930
42 H 0.105 0.895
43 H 0.090 0.910
44 H 0.128 0.872
45 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.731 -26.880 4.617 32.531
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.193 4.193
3 Si 0.821 3.179
4 H -0.184 1.184
5 H -0.205 1.205
6 H -0.187 1.187
7 C -0.694 4.694
8 H 0.102 0.898
9 S 0.073 5.927
10 C -0.279 4.279
11 C 0.321 3.679
12 O -0.432 6.432
13 N -0.336 5.336
14 C -0.025 4.025
15 C 0.033 3.967
16 N -0.356 5.356
17 C 0.301 3.699
18 O -0.470 6.470
19 C -0.129 4.129
20 H 0.140 0.860
21 C -0.138 4.138
22 C -0.178 4.178
23 C 0.044 3.956
24 H 0.118 0.882
25 F -0.210 7.210
26 C -0.183 4.183
27 C -0.214 4.214
28 C -0.154 4.154
29 H 0.080 0.920
30 H 0.125 0.875
31 H 0.130 0.870
32 H 0.259 0.741
33 H 0.095 0.905
34 H 0.052 0.948
35 H 0.256 0.744
36 H 0.131 0.869
37 H 0.097 0.903
38 H 0.108 0.892
39 H 0.119 0.881
40 H 0.095 0.905
41 H 0.089 0.911
42 H 0.123 0.877
43 H 0.109 0.891
44 H 0.146 0.854
45 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 14.790 -27.061 4.874 31.222
hybrid contribution 1.566 1.924 0.079 2.482
sum 16.356 -25.137 4.953 30.396
Atomic orbital electron populations
1.70182 1.08040 1.28683 1.47955 1.26159 0.95970 1.03431 0.93745
0.84995 0.77793 0.75605 0.79554 1.18433 1.20492 1.18683 1.23167
0.95333 0.91949 1.58941 0.89818 1.85648 1.10669 0.99372 1.97050
1.23361 1.03484 0.94406 1.06691 1.20096 0.86376 0.86511 0.74924
1.90711 1.17431 1.85915 1.49117 1.45051 1.10140 1.03087 1.75289
1.20713 1.06609 0.82174 0.92955 1.20744 0.90289 0.99581 0.86136
1.45772 1.11524 1.70127 1.08220 1.21113 0.89769 0.75407 0.83586
1.90718 1.21938 1.53624 1.80759 1.22220 0.96345 1.02081 0.92211
0.86010 1.22543 1.00770 0.92736 0.97758 1.22968 0.97949 1.03635
0.93287 1.22460 0.95674 0.96866 0.80603 0.88237 1.92793 1.86502
1.91929 1.49740 1.22688 1.00912 0.99146 0.95547 1.23397 0.99381
1.02853 0.95807 1.23530 0.95456 0.96778 0.99593 0.92014 0.87530
0.87007 0.74150 0.90473 0.94798 0.74354 0.86854 0.90347 0.89232
0.88133 0.90458 0.91112 0.87686 0.89097 0.85409 0.84921
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.70 13.22 21.65 0.29 -56.42 16
2 C 0.01 0.67 5.49 84.86 0.47 1.13 16
3 Si 1.00 43.70 29.55 68.60 2.03 45.73 16
4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16
5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16
6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16
7 C -0.55 -31.24 9.50 67.95 0.65 -30.59 16
8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16
9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16
10 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16
11 C 0.54 19.03 7.58 87.66 0.66 19.70 16
12 O -0.55 -25.45 15.02 -3.03 -0.05 -25.50 16
13 N -0.68 -15.04 5.45 -422.92 -2.31 -17.34 16
14 C 0.06 1.19 1.69 3.60 0.01 1.20 16
15 C 0.16 3.74 5.64 86.38 0.49 4.22 16
16 N -0.70 -11.73 5.50 -463.08 -2.55 -14.28 16
17 C 0.51 11.07 7.14 87.66 0.63 11.70 16
18 O -0.59 -19.53 15.42 -3.05 -0.05 -19.57 16
19 C -0.11 -1.45 3.25 -10.34 -0.03 -1.48 16
20 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16
21 C -0.10 -0.61 6.34 32.01 0.20 -0.40 16
22 C -0.14 -0.96 6.60 31.67 0.21 -0.76 16
23 C 0.08 1.05 4.68 31.32 0.15 1.20 16
24 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
25 F -0.23 -4.27 17.05 44.97 0.77 -3.51 16
26 C -0.14 -2.52 6.03 31.32 0.19 -2.34 16
27 C -0.18 -3.08 10.11 30.62 0.31 -2.77 16
28 C -0.12 -0.98 10.00 30.62 0.31 -0.68 16
29 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16
30 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16
31 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16
32 H 0.42 5.89 8.83 -92.71 -0.82 5.07 16
33 H 0.08 1.80 7.93 -2.39 -0.02 1.78 16
34 H 0.03 1.20 7.13 -2.39 -0.02 1.18 16
35 H 0.42 3.50 8.37 -92.70 -0.78 2.72 16
36 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16
37 H 0.08 0.53 8.06 -2.39 -0.02 0.51 16
38 H 0.09 0.58 8.12 -2.38 -0.02 0.56 16
39 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16
40 H 0.08 1.70 6.85 -2.39 -0.02 1.68 16
41 H 0.07 1.40 8.02 -2.39 -0.02 1.38 16
42 H 0.10 1.79 8.07 -2.39 -0.02 1.77 16
43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
44 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16
45 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16
Total: -1.00 -88.55 394.10 1.07 -87.48
By element:
Atomic # 1 Polarization: 18.17 SS G_CDS: -0.57 Total: 17.59 kcal
Atomic # 6 Polarization: -9.06 SS G_CDS: 4.66 Total: -4.40 kcal
Atomic # 7 Polarization: -83.47 SS G_CDS: -4.56 Total: -88.04 kcal
Atomic # 8 Polarization: -44.98 SS G_CDS: -0.09 Total: -45.07 kcal
Atomic # 9 Polarization: -4.27 SS G_CDS: 0.77 Total: -3.51 kcal
Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal
Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal
Total: -88.55 1.07 -87.48 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001739034517.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.114 kcal
(2) G-P(sol) polarization free energy of solvation -88.551 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.665 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.597 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds