Wall clock time and date at job start Sat Apr 11 2020 07:06:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53001 * 109.47186 * 2 1
4 4 H 1.09001 * 109.46696 * 54.99937 * 3 2 1
5 5 F 1.39895 * 109.47152 * 294.99964 * 3 2 1
6 6 C 1.50697 * 109.47196 * 174.99679 * 3 2 1
7 7 O 1.21280 * 119.99999 * 45.00193 * 6 3 2
8 8 N 1.34779 * 120.00176 * 225.00091 * 6 3 2
9 9 C 1.48144 * 127.83605 * 359.97438 * 8 6 3
10 10 C 1.57742 * 104.61257 * 139.76381 * 9 8 6
11 11 H 1.09007 * 120.32832 * 244.67473 * 10 9 8
12 12 C 1.53001 * 116.08032 * 87.41080 * 10 9 8
13 13 H 1.08995 * 117.44281 * 16.82984 * 12 10 9
14 14 C 1.52997 * 117.44134 * 161.57499 * 12 10 9
15 15 N 1.46506 * 109.47289 * 243.99937 * 14 12 10
16 16 C 1.34774 * 120.00072 * 180.02562 * 15 14 12
17 17 O 1.21284 * 120.00066 * 0.02562 * 16 15 14
18 18 C 1.50696 * 119.99838 * 180.02562 * 16 15 14
19 19 S 1.80997 * 109.47407 * 180.02562 * 18 16 15
20 20 C 1.76198 * 100.00268 * 179.97438 * 19 18 16
21 21 H 1.07994 * 120.00294 * 359.97438 * 20 19 18
22 22 C 1.38798 * 119.99650 * 180.02562 * 20 19 18
23 23 N 1.31627 * 120.00589 * 359.97438 * 22 20 19
24 24 Si 1.86804 * 119.99648 * 180.02562 * 22 20 19
25 25 H 1.48495 * 109.47221 * 359.97438 * 24 22 20
26 26 H 1.48496 * 109.47102 * 120.00096 * 24 22 20
27 27 H 1.48508 * 109.46938 * 239.99585 * 24 22 20
28 28 C 1.52999 * 60.49251 * 269.20313 * 12 10 9
29 29 H 1.09000 * 119.53547 * 248.25305 * 28 12 10
30 30 C 1.48143 * 127.83889 * 180.02562 * 8 6 3
31 31 H 1.09004 * 109.46789 * 60.00744 * 1 2 3
32 32 H 1.09006 * 109.46895 * 179.97438 * 1 2 3
33 33 H 1.08993 * 109.47314 * 300.00164 * 1 2 3
34 34 H 1.09007 * 109.47148 * 239.99783 * 2 1 3
35 35 H 1.08998 * 109.46977 * 119.99959 * 2 1 3
36 36 H 1.08991 * 110.41072 * 259.20257 * 9 8 6
37 37 H 1.09001 * 110.40622 * 21.51674 * 9 8 6
38 38 H 1.09001 * 109.47289 * 123.99808 * 14 12 10
39 39 H 1.09004 * 109.47261 * 4.00064 * 14 12 10
40 40 H 0.97001 * 119.99251 * 0.02562 * 15 14 12
41 41 H 1.09004 * 109.47043 * 299.99952 * 18 16 15
42 42 H 1.09001 * 109.47324 * 59.99585 * 18 16 15
43 43 H 0.96997 * 120.00713 * 180.02562 * 23 22 20
44 44 H 1.08998 * 110.40773 * 100.79702 * 30 8 6
45 45 H 1.09002 * 110.40609 * 338.36647 * 30 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9815 0.8418
5 9 1.6699 2.0680 -1.1954
6 6 3.5419 1.4443 0.1239
7 8 4.2064 0.6811 -0.5445
8 7 4.1466 2.2941 0.9775
9 6 3.5111 3.2917 1.8695
10 6 4.3321 3.2040 3.2135
11 1 3.8519 2.8626 4.1306
12 6 5.5797 4.0857 3.2984
13 1 5.6682 4.9012 2.5807
14 6 6.1509 4.3670 4.6896
15 7 6.0535 5.8004 4.9768
16 6 6.4988 6.2837 6.1535
17 8 6.9806 5.5321 6.9744
18 6 6.3980 7.7579 6.4491
19 16 7.0753 8.0911 8.0941
20 6 6.8379 9.8352 8.1753
21 1 6.3879 10.3582 7.3445
22 6 7.2301 10.5369 9.3068
23 7 7.7790 9.8997 10.3193
24 14 6.9778 12.3858 9.3931
25 1 6.3454 12.8584 8.1354
26 1 6.0972 12.7120 10.5434
27 1 8.2908 13.0570 9.5691
28 6 5.7010 2.6580 2.7619
29 1 6.2407 1.9098 3.3425
30 6 5.5977 2.4431 1.2360
31 1 -0.3633 0.5137 -0.8901
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8899
34 1 1.8934 -0.5139 -0.8900
35 1 1.8933 -0.5138 0.8900
36 1 3.5801 4.2888 1.4347
37 1 2.4692 3.0289 2.0522
38 1 7.1963 4.0602 4.7220
39 1 5.5849 3.8079 5.4347
40 1 5.6685 6.4014 4.3200
41 1 6.9634 8.3174 5.7037
42 1 5.3525 8.0643 6.4172
43 1 8.0528 10.3900 11.1101
44 1 5.9919 3.3080 0.7024
45 1 6.1309 1.5389 0.9424
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001701351881.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:09
Heat of formation + Delta-G solvation = -89.419956 kcal
Electronic energy + Delta-G solvation = -26307.831425 eV
Core-core repulsion = 22173.995046 eV
Total energy + Delta-G solvation = -4133.836379 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 344.136 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-48.41621 -40.98087 -39.37654 -38.73671 -35.33835 -34.56303 -33.57793 -32.45604
-30.07531 -29.43196 -28.34186 -27.05069 -25.52970 -24.66886 -22.54950 -21.34892
-20.87048 -20.31588 -20.03479 -18.39081 -17.89198 -17.19062 -16.67751 -16.48429
-16.21289 -15.88338 -15.56715 -15.23708 -14.83128 -14.73923 -14.58874 -14.32325
-14.08483 -13.90473 -13.57648 -13.49064 -13.26807 -13.13598 -12.92485 -12.67093
-12.59213 -12.41789 -12.08198 -11.89856 -11.81544 -11.67486 -11.43571 -11.09329
-11.04886 -10.80251 -10.71982 -10.53523 -10.19461 -9.83527 -9.46586 -9.41670
-9.10659 -8.95758 -8.26591 -6.53243 -6.24542 -3.95327 1.82686 2.11872
2.80852 3.01018 3.05062 3.19564 3.25829 3.29989 3.57772 3.61502
3.85959 3.89707 3.92028 4.08122 4.17633 4.26562 4.31403 4.40743
4.60886 4.71893 4.76523 4.80919 4.85907 4.95052 5.05888 5.09121
5.10883 5.18364 5.23774 5.35253 5.41863 5.46674 5.49496 5.51472
5.57763 5.63170 5.64599 5.82821 5.85275 6.09906 6.52336 6.80117
7.39163 7.57148 7.62641 8.32646 8.54262 9.21038 10.82935
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.025327 B = 0.001515 C = 0.001479
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1105.260655 B =18473.728161 C =18931.159524
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.141 4.141
3 C 0.085 3.915
4 H 0.102 0.898
5 F -0.188 7.188
6 C 0.515 3.485
7 O -0.519 6.519
8 N -0.618 5.618
9 C 0.121 3.879
10 C -0.166 4.166
11 H 0.134 0.866
12 C -0.121 4.121
13 H 0.114 0.886
14 C 0.152 3.848
15 N -0.737 5.737
16 C 0.532 3.468
17 O -0.517 6.517
18 C -0.153 4.153
19 S -0.061 6.061
20 C -0.536 4.536
21 H 0.073 0.927
22 C 0.074 3.926
23 N -0.867 5.867
24 Si 0.919 3.081
25 H -0.272 1.272
26 H -0.280 1.280
27 H -0.280 1.280
28 C -0.166 4.166
29 H 0.128 0.872
30 C 0.131 3.869
31 H 0.063 0.937
32 H 0.066 0.934
33 H 0.059 0.941
34 H 0.088 0.912
35 H 0.084 0.916
36 H 0.086 0.914
37 H 0.087 0.913
38 H 0.075 0.925
39 H 0.070 0.930
40 H 0.399 0.601
41 H 0.090 0.910
42 H 0.090 0.910
43 H 0.268 0.732
44 H 0.080 0.920
45 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.229 -17.064 -21.486 30.460
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.179 4.179
3 C 0.046 3.954
4 H 0.119 0.881
5 F -0.169 7.169
6 C 0.302 3.698
7 O -0.394 6.394
8 N -0.352 5.352
9 C -0.002 4.002
10 C -0.185 4.185
11 H 0.151 0.849
12 C -0.140 4.140
13 H 0.132 0.868
14 C 0.028 3.972
15 N -0.392 5.392
16 C 0.318 3.682
17 O -0.392 6.392
18 C -0.304 4.304
19 S 0.166 5.834
20 C -0.684 4.684
21 H 0.092 0.908
22 C -0.136 4.136
23 N -0.503 5.503
24 Si 0.745 3.255
25 H -0.196 1.196
26 H -0.206 1.206
27 H -0.206 1.206
28 C -0.186 4.186
29 H 0.145 0.855
30 C 0.009 3.991
31 H 0.082 0.918
32 H 0.085 0.915
33 H 0.078 0.922
34 H 0.106 0.894
35 H 0.103 0.897
36 H 0.104 0.896
37 H 0.105 0.895
38 H 0.093 0.907
39 H 0.088 0.912
40 H 0.233 0.767
41 H 0.108 0.892
42 H 0.108 0.892
43 H 0.078 0.922
44 H 0.098 0.902
45 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -12.052 -18.816 -20.428 30.275
hybrid contribution -0.883 2.439 -1.153 2.839
sum -12.934 -16.377 -21.580 30.020
Atomic orbital electron populations
1.21779 0.93830 1.02881 1.02634 1.22010 0.97539 0.93228 1.05150
1.21653 0.91376 0.96632 0.85771 0.88072 1.92895 1.91938 1.83896
1.48146 1.20639 0.90229 0.79638 0.79334 1.90756 1.66118 1.38961
1.43526 1.49306 1.08510 1.36805 1.40598 1.22611 0.97163 0.92442
0.87938 1.24560 0.89653 1.05677 0.98647 0.84861 1.22683 0.98921
0.93953 0.98398 0.86778 1.20738 1.01254 0.82569 0.92650 1.45958
1.65691 1.08275 1.19307 1.20318 0.76779 0.90363 0.80709 1.90712
1.42889 1.59453 1.46096 1.23527 1.05540 0.93898 1.07427 1.85410
1.79321 1.08869 1.09835 1.22908 1.47412 0.92478 1.05596 0.90846
1.24993 0.94507 0.99403 0.94667 1.70021 1.38498 1.36155 1.05588
0.86116 0.78090 0.83045 0.78232 1.19618 1.20556 1.20557 1.23668
1.01617 0.97814 0.95494 0.85458 1.21853 0.81079 1.03143 0.92985
0.91825 0.91500 0.92204 0.89355 0.89699 0.89561 0.89513 0.90696
0.91153 0.76687 0.89175 0.89168 0.92209 0.90159 0.88974
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.66 9.83 37.16 0.37 -0.29 16
2 C -0.14 -0.81 5.41 -26.73 -0.14 -0.96 16
3 C 0.08 0.56 3.59 -27.88 -0.10 0.46 16
4 H 0.10 0.39 6.07 -51.93 -0.32 0.08 16
5 F -0.19 -1.66 16.75 2.25 0.04 -1.62 16
6 C 0.52 4.68 7.26 -10.99 -0.08 4.60 16
7 O -0.52 -6.65 16.87 5.56 0.09 -6.56 16
8 N -0.62 -4.42 3.32 -167.12 -0.55 -4.98 16
9 C 0.12 0.56 6.76 -0.54 0.00 0.56 16
10 C -0.17 -0.88 7.02 -87.43 -0.61 -1.49 16
11 H 0.13 0.68 8.12 -51.93 -0.42 0.26 16
12 C -0.12 -0.74 5.34 -90.62 -0.48 -1.22 16
13 H 0.11 0.60 8.04 -51.93 -0.42 0.18 16
14 C 0.15 1.46 5.95 -4.04 -0.02 1.43 16
15 N -0.74 -8.56 5.56 -60.29 -0.33 -8.89 16
16 C 0.53 9.30 7.85 -10.99 -0.09 9.21 16
17 O -0.52 -11.26 15.86 5.55 0.09 -11.17 16
18 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16
19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16
20 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16
21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16
22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16
23 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16
24 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16
25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16
28 C -0.17 -0.99 6.77 -89.27 -0.60 -1.59 16
29 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16
30 C 0.13 0.88 6.85 -2.38 -0.02 0.87 16
31 H 0.06 0.31 7.94 -51.93 -0.41 -0.11 16
32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16
33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16
34 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16
35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.09 0.26 6.33 -51.93 -0.33 -0.07 16
38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
39 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16
40 H 0.40 3.41 8.40 -40.82 -0.34 3.07 16
41 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16
42 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16
43 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16
44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
45 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16
LS Contribution 394.95 15.07 5.95 5.95
Total: -1.00 -36.63 394.95 -9.42 -46.04
By element:
Atomic # 1 Polarization: 4.79 SS G_CDS: -6.83 Total: -2.03 kcal
Atomic # 6 Polarization: -2.49 SS G_CDS: -1.37 Total: -3.87 kcal
Atomic # 7 Polarization: -38.81 SS G_CDS: -0.16 Total: -38.96 kcal
Atomic # 8 Polarization: -17.91 SS G_CDS: 0.18 Total: -17.73 kcal
Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal
Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -36.63 -9.42 -46.04 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001701351881.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.375 kcal
(2) G-P(sol) polarization free energy of solvation -36.627 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.002 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.420 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds