Wall clock time and date at job start Sat Apr 11 2020 07:06:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86811 * 119.99581 * 2 1
4 4 H 1.48502 * 109.46773 * 274.79795 * 3 2 1
5 5 H 1.48500 * 109.47152 * 34.79905 * 3 2 1
6 6 H 1.48496 * 109.46873 * 154.79954 * 3 2 1
7 7 C 1.37879 * 120.00759 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99670 * 8.56244 * 7 2 1
9 9 C 1.50693 * 120.00124 * 188.56232 * 7 2 1
10 10 O 1.42898 * 110.78129 * 56.10758 * 9 7 2
11 11 C 1.55151 * 110.72476 * 292.86605 * 9 7 2
12 12 C 1.55123 * 101.49079 * 205.97213 * 11 9 7
13 13 N 1.47430 * 104.72445 * 37.29223 * 12 11 9
14 14 C 1.34767 * 125.65122 * 155.81875 * 13 12 11
15 15 O 1.21587 * 120.00335 * 5.16966 * 14 13 12
16 16 C 1.47603 * 120.00118 * 185.17088 * 14 13 12
17 17 C 1.39746 * 120.07308 * 171.68949 * 16 14 13
18 18 C 1.37667 * 119.92617 * 180.02562 * 17 16 14
19 19 C 1.39135 * 120.07187 * 359.97438 * 18 17 16
20 20 N 1.39447 * 119.92494 * 180.02562 * 19 18 17
21 21 C 1.46757 * 124.34846 * 353.72604 * 20 19 18
22 22 C 1.54482 * 105.47306 * 197.02297 * 21 20 19
23 23 C 1.54626 * 101.76404 * 334.58737 * 22 21 20
24 24 C 1.34419 * 124.34560 * 173.44079 * 20 19 18
25 25 O 1.21272 * 124.94748 * 359.55431 * 24 20 19
26 26 C 1.39131 * 120.14884 * 0.29965 * 19 18 17
27 27 C 1.37667 * 120.07181 * 359.44680 * 26 19 18
28 28 C 1.47022 * 108.69811 * 335.55528 * 13 12 11
29 29 H 0.96993 * 120.00626 * 0.02562 * 1 2 3
30 30 H 0.96704 * 114.00466 * 61.78324 * 10 9 7
31 31 H 1.09007 * 111.00113 * 324.20960 * 11 9 7
32 32 H 1.08994 * 111.00723 * 88.02267 * 11 9 7
33 33 H 1.08997 * 110.49768 * 278.45485 * 12 11 9
34 34 H 1.08999 * 110.35098 * 156.05421 * 12 11 9
35 35 H 1.08002 * 120.04073 * 0.02562 * 17 16 14
36 36 H 1.08001 * 119.96457 * 180.02562 * 18 17 16
37 37 H 1.08997 * 110.25170 * 316.02429 * 21 20 19
38 38 H 1.09008 * 110.24253 * 78.02431 * 21 20 19
39 39 H 1.08993 * 110.96867 * 92.70879 * 22 21 20
40 40 H 1.09003 * 110.96808 * 216.47394 * 22 21 20
41 41 H 1.09000 * 110.48653 * 143.47702 * 23 22 21
42 42 H 1.09005 * 110.48531 * 265.98799 * 23 22 21
43 43 H 1.07998 * 119.96389 * 179.72457 * 26 19 18
44 44 H 1.08006 * 120.03948 * 180.27670 * 27 26 19
45 45 H 1.09007 * 109.88145 * 120.70245 * 28 13 12
46 46 H 1.08997 * 109.88448 * 241.71236 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.3950 2.1051 -1.3952
5 1 1.5008 2.6214 0.7990
6 1 3.5936 1.4132 0.5961
7 6 2.0046 -1.1940 0.0005
8 1 1.4737 -2.1242 -0.1383
9 6 3.4990 -1.2010 0.1948
10 8 3.8551 -0.5425 1.4120
11 6 4.2130 -0.5423 -1.0149
12 6 5.6026 -1.2300 -0.9655
13 7 5.3193 -2.6185 -0.5588
14 6 6.1013 -3.6864 -0.8124
15 8 7.1847 -3.5343 -1.3428
16 6 5.6425 -5.0407 -0.4464
17 6 6.3668 -6.1614 -0.8613
18 6 5.9359 -7.4232 -0.5187
19 6 4.7808 -7.5832 0.2404
20 7 4.3474 -8.8627 0.5862
21 6 4.9560 -10.1043 0.0944
22 6 3.9145 -11.2113 0.3702
23 6 3.1219 -10.6106 1.5542
24 6 3.3219 -9.1173 1.4171
25 8 2.6527 -8.2728 1.9737
26 6 4.0542 -6.4698 0.6503
27 6 4.4825 -5.2050 0.3155
28 6 4.0454 -2.6441 0.1748
29 1 -0.4851 0.8399 -0.0004
30 1 3.4968 -0.9626 2.2060
31 1 3.6939 -0.7694 -1.9461
32 1 4.3062 0.5346 -0.8746
33 1 6.2436 -0.7429 -0.2307
34 1 6.0702 -1.2110 -1.9499
35 1 7.2637 -6.0379 -1.4502
36 1 6.4954 -8.2897 -0.8386
37 1 5.1533 -10.0300 -0.9750
38 1 5.8793 -10.3118 0.6355
39 1 3.2686 -11.3633 -0.4945
40 1 4.4020 -12.1423 0.6595
41 1 2.0652 -10.8657 1.4746
42 1 3.5279 -10.9624 2.5027
43 1 3.1556 -6.5977 1.2356
44 1 3.9204 -4.3409 0.6377
45 1 3.3387 -3.3011 -0.3324
46 1 4.2113 -2.9943 1.1936
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592837005.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:34
Heat of formation + Delta-G solvation = -42.489430 kcal
Electronic energy + Delta-G solvation = -30222.961012 eV
Core-core repulsion = 26079.176047 eV
Total energy + Delta-G solvation = -4143.784965 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.39729 -40.12540 -38.33232 -37.40988 -36.88933 -34.58505 -33.49568 -32.44259
-31.45883 -30.44905 -29.25879 -28.38999 -28.04917 -25.63305 -24.11482 -23.42541
-22.22808 -21.55004 -20.13211 -19.90440 -19.62147 -17.87203 -17.72128 -17.19949
-16.93768 -16.26724 -15.68884 -15.27397 -14.88519 -14.80154 -14.73798 -14.30707
-14.18895 -14.04857 -13.77745 -13.66530 -13.35688 -13.28011 -13.24238 -12.98713
-12.83362 -12.47606 -12.25924 -12.11330 -11.97219 -11.62256 -11.54099 -11.38328
-11.19580 -11.05493 -10.49353 -10.40952 -10.32541 -10.07814 -9.83029 -9.54169
-9.05421 -9.01529 -8.74028 -8.47375 -8.26536 -8.01290 -6.25147 -4.36919
0.81494 1.38358 2.19478 2.44967 3.10370 3.29848 3.37319 3.42424
3.59778 3.78623 3.90098 3.97796 4.27797 4.41021 4.46664 4.76352
4.78170 4.86088 4.95249 4.98957 5.03251 5.16656 5.17781 5.25657
5.29350 5.33018 5.40030 5.42642 5.50219 5.58494 5.77727 5.87468
5.98331 6.01751 6.07325 6.19773 6.20211 6.39272 6.42914 6.53140
6.64207 6.70127 6.78292 6.94715 7.09136 7.41401 7.70995 7.91349
8.13168 8.47608 8.68222 8.84857 9.38442 10.84779
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.015024 B = 0.002954 C = 0.002551
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1863.265863 B = 9477.241532 C =10972.402189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.883 5.883
2 C 0.091 3.909
3 Si 0.870 3.130
4 H -0.287 1.287
5 H -0.297 1.297
6 H -0.221 1.221
7 C -0.555 4.555
8 H 0.079 0.921
9 C 0.217 3.783
10 O -0.569 6.569
11 C -0.129 4.129
12 C 0.110 3.890
13 N -0.603 5.603
14 C 0.571 3.429
15 O -0.557 6.557
16 C -0.153 4.153
17 C -0.034 4.034
18 C -0.172 4.172
19 C 0.182 3.818
20 N -0.559 5.559
21 C 0.093 3.907
22 C -0.131 4.131
23 C -0.153 4.153
24 C 0.512 3.488
25 O -0.501 6.501
26 C -0.164 4.164
27 C -0.089 4.089
28 C 0.074 3.926
29 H 0.267 0.733
30 H 0.364 0.636
31 H 0.087 0.913
32 H 0.079 0.921
33 H 0.067 0.933
34 H 0.069 0.931
35 H 0.137 0.863
36 H 0.128 0.872
37 H 0.089 0.911
38 H 0.082 0.918
39 H 0.087 0.913
40 H 0.096 0.904
41 H 0.108 0.892
42 H 0.109 0.891
43 H 0.159 0.841
44 H 0.172 0.828
45 H 0.086 0.914
46 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.547 -22.133 0.698 24.114
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.519 5.519
2 C -0.114 4.114
3 Si 0.698 3.302
4 H -0.214 1.214
5 H -0.224 1.224
6 H -0.144 1.144
7 C -0.592 4.592
8 H 0.097 0.903
9 C 0.177 3.823
10 O -0.376 6.376
11 C -0.167 4.167
12 C -0.012 4.012
13 N -0.335 5.335
14 C 0.361 3.639
15 O -0.438 6.438
16 C -0.157 4.157
17 C -0.054 4.054
18 C -0.193 4.193
19 C 0.088 3.912
20 N -0.283 5.283
21 C -0.029 4.029
22 C -0.169 4.169
23 C -0.193 4.193
24 C 0.302 3.698
25 O -0.375 6.375
26 C -0.184 4.184
27 C -0.107 4.107
28 C -0.048 4.048
29 H 0.077 0.923
30 H 0.211 0.789
31 H 0.106 0.894
32 H 0.098 0.902
33 H 0.085 0.915
34 H 0.088 0.912
35 H 0.155 0.845
36 H 0.146 0.854
37 H 0.107 0.893
38 H 0.100 0.900
39 H 0.105 0.895
40 H 0.115 0.885
41 H 0.127 0.873
42 H 0.127 0.873
43 H 0.176 0.824
44 H 0.189 0.811
45 H 0.104 0.896
46 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 9.934 -21.183 0.304 23.399
hybrid contribution -0.035 0.358 0.244 0.435
sum 9.899 -20.825 0.548 23.065
Atomic orbital electron populations
1.69942 1.06726 1.27692 1.47527 1.24918 0.94525 0.99744 0.92258
0.87115 0.82949 0.82268 0.77879 1.21360 1.22406 1.14422 1.21172
0.88957 0.95493 1.53609 0.90258 1.19995 0.94070 0.85289 0.82959
1.86553 1.77850 1.56972 1.16197 1.23261 0.93461 1.00147 0.99814
1.22326 0.98311 0.80787 0.99787 1.48414 1.22640 1.07588 1.54823
1.17855 0.83640 0.83614 0.78770 1.90719 1.21315 1.86220 1.45514
1.19902 0.98261 0.93320 1.04192 1.20975 0.98173 0.90294 0.95942
1.20624 0.97003 0.97928 1.03741 1.18016 0.94034 0.83171 0.96019
1.45760 1.32165 1.05215 1.45147 1.22297 0.97067 0.82306 1.01238
1.22625 0.97517 0.98064 0.98682 1.22351 1.03991 0.91953 1.01031
1.21149 0.79017 0.92014 0.77667 1.90685 1.47667 1.52061 1.47077
1.21636 1.02388 0.90618 1.03753 1.22944 0.94567 0.99370 0.93846
1.23404 0.84270 1.01879 0.95277 0.92319 0.78855 0.89401 0.90250
0.91519 0.91211 0.84476 0.85373 0.89287 0.89988 0.89474 0.88543
0.87318 0.87283 0.82368 0.81129 0.89600 0.91198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.69 13.96 55.43 0.77 -24.91 16
2 C 0.09 2.48 5.46 -17.82 -0.10 2.38 16
3 Si 0.87 20.79 24.56 -169.99 -4.18 16.62 16
4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
5 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16
6 H -0.22 -5.10 4.76 56.52 0.27 -4.83 16
7 C -0.56 -14.23 8.81 -34.44 -0.30 -14.53 16
8 H 0.08 2.19 7.77 -52.49 -0.41 1.79 16
9 C 0.22 4.66 0.67 -89.94 -0.06 4.60 16
10 O -0.57 -11.96 10.22 -35.23 -0.36 -12.32 16
11 C -0.13 -2.63 4.98 -24.47 -0.12 -2.76 16
12 C 0.11 2.06 6.89 -2.41 -0.02 2.04 16
13 N -0.60 -11.40 3.32 -175.50 -0.58 -11.98 16
14 C 0.57 10.79 7.80 -12.44 -0.10 10.69 16
15 O -0.56 -11.67 16.67 5.29 0.09 -11.59 16
16 C -0.15 -2.50 5.87 -104.95 -0.62 -3.12 16
17 C -0.03 -0.48 9.58 -39.23 -0.38 -0.85 16
18 C -0.17 -1.99 9.38 -39.46 -0.37 -2.36 16
19 C 0.18 2.33 6.59 -83.73 -0.55 1.77 16
20 N -0.56 -5.64 3.12 -112.26 -0.35 -5.99 16
21 C 0.09 0.49 6.24 -3.12 -0.02 0.47 16
22 C -0.13 -0.43 7.18 -25.10 -0.18 -0.61 16
23 C -0.15 -0.86 6.86 -26.74 -0.18 -1.05 16
24 C 0.51 5.60 7.91 -10.86 -0.09 5.52 16
25 O -0.50 -7.60 14.80 5.56 0.08 -7.52 16
26 C -0.16 -2.47 9.25 -39.46 -0.37 -2.83 16
27 C -0.09 -1.41 8.57 -39.23 -0.34 -1.74 16
28 C 0.07 1.38 4.22 -3.06 -0.01 1.37 16
29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16
30 H 0.36 6.57 9.09 45.56 0.41 6.99 16
31 H 0.09 1.80 8.04 -51.92 -0.42 1.38 16
32 H 0.08 1.64 4.91 -51.93 -0.26 1.39 16
33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16
34 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16
35 H 0.14 1.80 7.67 -52.49 -0.40 1.40 16
36 H 0.13 1.05 7.00 -52.49 -0.37 0.68 16
37 H 0.09 0.39 7.70 -51.93 -0.40 -0.01 16
38 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16
39 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16
40 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16
41 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16
42 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16
43 H 0.16 2.56 5.25 -52.49 -0.28 2.29 16
44 H 0.17 2.75 2.76 -57.56 -0.16 2.59 16
45 H 0.09 1.63 6.15 -51.93 -0.32 1.31 16
46 H 0.07 1.20 6.70 -51.93 -0.35 0.85 16
LS Contribution 360.20 15.07 5.43 5.43
Total: -1.00 -34.47 360.20 -8.05 -42.52
By element:
Atomic # 1 Polarization: 15.90 SS G_CDS: -5.16 Total: 10.74 kcal
Atomic # 6 Polarization: 2.80 SS G_CDS: -3.79 Total: -1.00 kcal
Atomic # 7 Polarization: -42.73 SS G_CDS: -0.16 Total: -42.89 kcal
Atomic # 8 Polarization: -31.24 SS G_CDS: -0.19 Total: -31.42 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -4.18 Total: 16.62 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -34.47 -8.05 -42.52 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592837005.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.033 kcal
(2) G-P(sol) polarization free energy of solvation -34.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.435 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.489 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds