Wall clock time and date at job start Sat Apr 11 2020 07:06:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86811 * 119.99581 * 2 1
4 4 H 1.48502 * 109.46773 * 274.79795 * 3 2 1
5 5 H 1.48500 * 109.47152 * 34.79905 * 3 2 1
6 6 H 1.48496 * 109.46873 * 154.79954 * 3 2 1
7 7 C 1.37879 * 120.00759 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99670 * 8.56244 * 7 2 1
9 9 C 1.50693 * 120.00124 * 188.56232 * 7 2 1
10 10 O 1.42898 * 110.78129 * 56.10758 * 9 7 2
11 11 C 1.55151 * 110.72476 * 292.86605 * 9 7 2
12 12 C 1.55123 * 101.49079 * 205.97213 * 11 9 7
13 13 N 1.47430 * 104.72445 * 37.29223 * 12 11 9
14 14 C 1.34767 * 125.65122 * 155.81875 * 13 12 11
15 15 O 1.21587 * 120.00335 * 5.16966 * 14 13 12
16 16 C 1.47603 * 120.00118 * 185.17088 * 14 13 12
17 17 C 1.39746 * 120.07308 * 171.68949 * 16 14 13
18 18 C 1.37667 * 119.92617 * 180.02562 * 17 16 14
19 19 C 1.39135 * 120.07187 * 359.97438 * 18 17 16
20 20 N 1.39447 * 119.92494 * 180.02562 * 19 18 17
21 21 C 1.46757 * 124.34846 * 353.72604 * 20 19 18
22 22 C 1.54482 * 105.47306 * 197.02297 * 21 20 19
23 23 C 1.54626 * 101.76404 * 334.58737 * 22 21 20
24 24 C 1.34419 * 124.34560 * 173.44079 * 20 19 18
25 25 O 1.21272 * 124.94748 * 359.55431 * 24 20 19
26 26 C 1.39131 * 120.14884 * 0.29965 * 19 18 17
27 27 C 1.37667 * 120.07181 * 359.44680 * 26 19 18
28 28 C 1.47022 * 108.69811 * 335.55528 * 13 12 11
29 29 H 0.96993 * 120.00626 * 0.02562 * 1 2 3
30 30 H 0.96704 * 114.00466 * 61.78324 * 10 9 7
31 31 H 1.09007 * 111.00113 * 324.20960 * 11 9 7
32 32 H 1.08994 * 111.00723 * 88.02267 * 11 9 7
33 33 H 1.08997 * 110.49768 * 278.45485 * 12 11 9
34 34 H 1.08999 * 110.35098 * 156.05421 * 12 11 9
35 35 H 1.08002 * 120.04073 * 0.02562 * 17 16 14
36 36 H 1.08001 * 119.96457 * 180.02562 * 18 17 16
37 37 H 1.08997 * 110.25170 * 316.02429 * 21 20 19
38 38 H 1.09008 * 110.24253 * 78.02431 * 21 20 19
39 39 H 1.08993 * 110.96867 * 92.70879 * 22 21 20
40 40 H 1.09003 * 110.96808 * 216.47394 * 22 21 20
41 41 H 1.09000 * 110.48653 * 143.47702 * 23 22 21
42 42 H 1.09005 * 110.48531 * 265.98799 * 23 22 21
43 43 H 1.07998 * 119.96389 * 179.72457 * 26 19 18
44 44 H 1.08006 * 120.03948 * 180.27670 * 27 26 19
45 45 H 1.09007 * 109.88145 * 120.70245 * 28 13 12
46 46 H 1.08997 * 109.88448 * 241.71236 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 2.3950 2.1051 -1.3952
5 1 1.5008 2.6214 0.7990
6 1 3.5936 1.4132 0.5961
7 6 2.0046 -1.1940 0.0005
8 1 1.4737 -2.1242 -0.1383
9 6 3.4990 -1.2010 0.1948
10 8 3.8551 -0.5425 1.4120
11 6 4.2130 -0.5423 -1.0149
12 6 5.6026 -1.2300 -0.9655
13 7 5.3193 -2.6185 -0.5588
14 6 6.1013 -3.6864 -0.8124
15 8 7.1847 -3.5343 -1.3428
16 6 5.6425 -5.0407 -0.4464
17 6 6.3668 -6.1614 -0.8613
18 6 5.9359 -7.4232 -0.5187
19 6 4.7808 -7.5832 0.2404
20 7 4.3474 -8.8627 0.5862
21 6 4.9560 -10.1043 0.0944
22 6 3.9145 -11.2113 0.3702
23 6 3.1219 -10.6106 1.5542
24 6 3.3219 -9.1173 1.4171
25 8 2.6527 -8.2728 1.9737
26 6 4.0542 -6.4698 0.6503
27 6 4.4825 -5.2050 0.3155
28 6 4.0454 -2.6441 0.1748
29 1 -0.4851 0.8399 -0.0004
30 1 3.4968 -0.9626 2.2060
31 1 3.6939 -0.7694 -1.9461
32 1 4.3062 0.5346 -0.8746
33 1 6.2436 -0.7429 -0.2307
34 1 6.0702 -1.2110 -1.9499
35 1 7.2637 -6.0379 -1.4502
36 1 6.4954 -8.2897 -0.8386
37 1 5.1533 -10.0300 -0.9750
38 1 5.8793 -10.3118 0.6355
39 1 3.2686 -11.3633 -0.4945
40 1 4.4020 -12.1423 0.6595
41 1 2.0652 -10.8657 1.4746
42 1 3.5279 -10.9624 2.5027
43 1 3.1556 -6.5977 1.2356
44 1 3.9204 -4.3409 0.6377
45 1 3.3387 -3.3011 -0.3324
46 1 4.2113 -2.9943 1.1936
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592837005.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:33
Heat of formation + Delta-G solvation = -67.833491 kcal
Electronic energy + Delta-G solvation = -30224.060013 eV
Core-core repulsion = 26079.176047 eV
Total energy + Delta-G solvation = -4144.883966 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.24300 -41.49264 -39.62629 -38.85605 -37.71789 -36.22299 -34.49901 -34.31534
-32.68239 -31.80385 -30.55839 -29.73367 -28.64250 -27.38773 -25.41748 -24.29686
-23.60001 -22.35169 -21.58603 -21.15273 -20.85992 -19.55052 -18.73403 -18.29994
-17.82006 -17.56968 -16.96610 -16.77907 -16.70939 -16.23313 -15.74967 -15.42915
-15.11548 -15.00410 -14.93995 -14.79074 -14.69342 -14.57639 -14.49744 -14.19449
-14.07967 -13.79436 -13.46882 -13.32778 -13.18055 -13.04283 -12.85491 -12.57309
-12.35514 -12.25221 -12.11142 -11.97355 -11.62209 -11.22861 -11.14601 -10.97144
-10.76194 -10.71595 -10.25797 -10.13352 -9.74960 -9.05694 -8.36953 -6.50576
-0.32656 0.29483 1.28874 1.38462 1.46065 1.68052 1.71169 1.83991
1.92806 2.40129 2.78636 2.98175 3.22959 3.38927 3.52049 3.54923
3.68171 3.87912 3.89329 3.98184 3.99047 4.08284 4.19569 4.22253
4.29908 4.32994 4.48934 4.54071 4.61199 4.64960 4.65978 4.81281
4.88092 4.95264 5.01260 5.02635 5.07203 5.08799 5.16757 5.19175
5.31278 5.37971 5.41966 5.49095 5.88169 5.97893 6.05682 6.41493
6.59638 6.88873 7.00707 7.12269 7.31022 8.76700
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.015024 B = 0.002954 C = 0.002551
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1863.265863 B = 9477.241532 C =10972.402189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.041 3.959
3 Si 0.929 3.071
4 H -0.282 1.282
5 H -0.305 1.305
6 H -0.205 1.205
7 C -0.549 4.549
8 H 0.045 0.955
9 C 0.215 3.785
10 O -0.572 6.572
11 C -0.129 4.129
12 C 0.115 3.885
13 N -0.607 5.607
14 C 0.570 3.430
15 O -0.580 6.580
16 C -0.178 4.178
17 C -0.032 4.032
18 C -0.154 4.154
19 C 0.188 3.812
20 N -0.561 5.561
21 C 0.081 3.919
22 C -0.117 4.117
23 C -0.145 4.145
24 C 0.495 3.505
25 O -0.556 6.556
26 C -0.186 4.186
27 C -0.094 4.094
28 C 0.088 3.912
29 H 0.268 0.732
30 H 0.377 0.623
31 H 0.082 0.918
32 H 0.081 0.919
33 H 0.073 0.927
34 H 0.080 0.920
35 H 0.147 0.853
36 H 0.173 0.827
37 H 0.104 0.896
38 H 0.104 0.896
39 H 0.092 0.908
40 H 0.130 0.870
41 H 0.115 0.885
42 H 0.128 0.872
43 H 0.140 0.860
44 H 0.159 0.841
45 H 0.078 0.922
46 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.204 -24.991 0.339 27.814
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.160 4.160
3 Si 0.754 3.246
4 H -0.208 1.208
5 H -0.233 1.233
6 H -0.127 1.127
7 C -0.586 4.586
8 H 0.064 0.936
9 C 0.175 3.825
10 O -0.379 6.379
11 C -0.167 4.167
12 C -0.007 4.007
13 N -0.338 5.338
14 C 0.362 3.638
15 O -0.463 6.463
16 C -0.182 4.182
17 C -0.051 4.051
18 C -0.174 4.174
19 C 0.092 3.908
20 N -0.283 5.283
21 C -0.039 4.039
22 C -0.154 4.154
23 C -0.185 4.185
24 C 0.287 3.713
25 O -0.434 6.434
26 C -0.206 4.206
27 C -0.112 4.112
28 C -0.035 4.035
29 H 0.077 0.923
30 H 0.226 0.774
31 H 0.100 0.900
32 H 0.100 0.900
33 H 0.091 0.909
34 H 0.098 0.902
35 H 0.165 0.835
36 H 0.191 0.809
37 H 0.123 0.877
38 H 0.122 0.878
39 H 0.111 0.889
40 H 0.148 0.852
41 H 0.133 0.867
42 H 0.146 0.854
43 H 0.158 0.842
44 H 0.176 0.824
45 H 0.095 0.905
46 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 12.616 -24.099 -0.061 27.202
hybrid contribution -0.908 1.046 0.390 1.439
sum 11.709 -23.054 0.329 25.859
Atomic orbital electron populations
1.70064 1.08435 1.28431 1.50110 1.25672 0.95015 1.03035 0.92262
0.86228 0.82228 0.78152 0.77953 1.20822 1.23339 1.12684 1.21400
0.91308 0.93944 1.51977 0.93643 1.19858 0.91676 0.87313 0.83675
1.86491 1.77669 1.57288 1.16490 1.23192 0.94359 1.00320 0.98833
1.22286 0.97200 0.80599 1.00634 1.48444 1.22517 1.07901 1.54972
1.18232 0.83179 0.84296 0.78069 1.90691 1.22197 1.86651 1.46773
1.19819 0.99339 0.92820 1.06206 1.21187 0.98054 0.90402 0.95470
1.20963 0.96135 0.98424 1.01922 1.18167 0.93778 0.84006 0.94883
1.46120 1.32039 1.05597 1.44592 1.22772 0.98251 0.80464 1.02414
1.22693 0.96698 0.98415 0.97623 1.22434 1.05123 0.87709 1.03233
1.22282 0.78284 0.94049 0.76715 1.90656 1.49497 1.54145 1.49149
1.21553 1.02679 0.91560 1.04845 1.22722 0.94676 0.99385 0.94434
1.23186 0.84231 0.99873 0.96197 0.92349 0.77383 0.89972 0.90042
0.90894 0.90158 0.83485 0.80947 0.87726 0.87759 0.88933 0.85154
0.86716 0.85380 0.84208 0.82394 0.90455 0.89668
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.09 13.96 21.45 0.30 -55.79 16
2 C 0.04 2.28 5.46 84.66 0.46 2.74 16
3 Si 0.93 43.29 24.56 68.60 1.68 44.97 16
4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
5 H -0.31 -14.61 7.11 99.48 0.71 -13.91 16
6 H -0.20 -8.92 4.76 99.48 0.47 -8.45 16
7 C -0.55 -28.97 8.81 25.60 0.23 -28.75 16
8 H 0.05 2.66 7.77 -2.91 -0.02 2.63 16
9 C 0.22 9.26 0.67 -10.35 -0.01 9.26 16
10 O -0.57 -23.43 10.22 -148.98 -1.52 -24.95 16
11 C -0.13 -5.19 4.98 32.06 0.16 -5.03 16
12 C 0.11 4.18 6.89 86.93 0.60 4.78 16
13 N -0.61 -22.81 3.32 -827.43 -2.75 -25.56 16
14 C 0.57 21.38 7.80 86.72 0.68 22.05 16
15 O -0.58 -23.91 16.67 -3.99 -0.07 -23.97 16
16 C -0.18 -5.78 5.87 -20.08 -0.12 -5.89 16
17 C -0.03 -0.82 9.58 22.50 0.22 -0.60 16
18 C -0.15 -3.09 9.38 22.35 0.21 -2.88 16
19 C 0.19 4.55 6.59 38.36 0.25 4.80 16
20 N -0.56 -10.12 3.12 -627.67 -1.96 -12.08 16
21 C 0.08 0.50 6.24 86.83 0.54 1.04 16
22 C -0.12 -0.24 7.18 31.65 0.23 -0.01 16
23 C -0.15 -1.24 6.86 30.59 0.21 -1.03 16
24 C 0.49 10.43 7.91 87.90 0.70 11.13 16
25 O -0.56 -17.67 14.80 -3.00 -0.04 -17.72 16
26 C -0.19 -5.78 9.25 22.35 0.21 -5.58 16
27 C -0.09 -3.06 8.57 22.50 0.19 -2.87 16
28 C 0.09 3.33 4.22 86.73 0.37 3.70 16
29 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16
30 H 0.38 13.35 9.09 -74.05 -0.67 12.67 16
31 H 0.08 3.37 8.04 -2.38 -0.02 3.35 16
32 H 0.08 3.23 4.91 -2.39 -0.01 3.22 16
33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16
34 H 0.08 2.76 8.09 -2.39 -0.02 2.74 16
35 H 0.15 3.51 7.67 -2.91 -0.02 3.49 16
36 H 0.17 1.89 7.00 -2.91 -0.02 1.87 16
37 H 0.10 0.37 7.70 -2.39 -0.02 0.35 16
38 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16
39 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16
40 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16
41 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16
42 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16
43 H 0.14 4.90 5.25 -2.91 -0.02 4.89 16
44 H 0.16 5.38 2.76 -7.68 -0.02 5.36 16
45 H 0.08 3.08 6.15 -2.38 -0.01 3.07 16
46 H 0.09 2.97 6.70 -2.39 -0.02 2.96 16
Total: -1.00 -78.68 360.20 0.88 -77.80
By element:
Atomic # 1 Polarization: 30.32 SS G_CDS: 0.13 Total: 30.45 kcal
Atomic # 6 Polarization: 1.75 SS G_CDS: 5.11 Total: 6.86 kcal
Atomic # 7 Polarization: -89.03 SS G_CDS: -4.41 Total: -93.44 kcal
Atomic # 8 Polarization: -65.01 SS G_CDS: -1.63 Total: -66.64 kcal
Atomic # 14 Polarization: 43.29 SS G_CDS: 1.68 Total: 44.97 kcal
Total: -78.68 0.88 -77.80 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592837005.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.964 kcal
(2) G-P(sol) polarization free energy of solvation -78.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds