Wall clock time and date at job start Sat Apr 11 2020 07:08:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86806 * 119.99835 * 2 1
4 4 H 1.48503 * 109.47005 * 0.02562 * 3 2 1
5 5 H 1.48498 * 109.46894 * 120.00437 * 3 2 1
6 6 H 1.48501 * 109.47217 * 240.00316 * 3 2 1
7 7 C 1.38696 * 120.00245 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99927 * 179.97438 * 7 2 1
9 9 O 1.34815 * 119.99895 * 359.97438 * 7 2 1
10 10 C 1.35521 * 116.99927 * 174.93782 * 9 7 2
11 11 C 1.38829 * 120.16149 * 5.53995 * 10 9 7
12 12 C 1.38028 * 120.07412 * 179.76683 * 11 10 9
13 13 C 1.38573 * 120.39698 * 0.51011 * 12 11 10
14 14 C 1.37828 * 120.32405 * 359.73964 * 13 12 11
15 15 C 1.39659 * 119.92220 * 0.02562 * 14 13 12
16 16 C 1.47536 * 120.20064 * 179.97438 * 15 14 13
17 17 O 1.21593 * 120.00168 * 205.28227 * 16 15 14
18 18 N 1.34783 * 119.99725 * 25.28852 * 16 15 14
19 19 C 1.47215 * 126.69958 * 354.09577 * 18 16 15
20 20 C 1.54124 * 106.18982 * 148.67788 * 19 18 16
21 21 H 1.08999 * 112.46771 * 257.21459 * 20 19 18
22 22 C 1.54178 * 108.95365 * 132.91732 * 20 19 18
23 23 C 1.54847 * 104.30228 * 223.20630 * 22 20 19
24 24 C 1.54855 * 102.73580 * 38.13834 * 23 22 20
25 25 C 1.54178 * 104.29782 * 321.85970 * 24 23 22
26 26 C 1.50700 * 111.61973 * 260.77250 * 25 24 23
27 27 N 1.34774 * 119.99854 * 298.59291 * 26 25 24
28 28 O 1.21286 * 119.99652 * 118.58167 * 26 25 24
29 29 C 1.47216 * 126.69897 * 174.41479 * 18 16 15
30 30 H 0.97006 * 120.00117 * 180.02562 * 1 2 3
31 31 H 1.08001 * 119.96459 * 0.02562 * 11 10 9
32 32 H 1.07997 * 119.80367 * 180.22837 * 12 11 10
33 33 H 1.08000 * 119.83949 * 179.76627 * 13 12 11
34 34 H 1.08004 * 120.04119 * 180.02562 * 14 13 12
35 35 H 1.08995 * 110.08373 * 267.99108 * 19 18 16
36 36 H 1.09004 * 110.08112 * 29.54869 * 19 18 16
37 37 H 1.09000 * 110.46659 * 104.49617 * 22 20 19
38 38 H 1.09001 * 110.57747 * 341.96922 * 22 20 19
39 39 H 1.09001 * 110.75911 * 279.82268 * 23 22 20
40 40 H 1.09000 * 110.91783 * 156.52089 * 23 22 20
41 41 H 1.09002 * 110.46315 * 203.16190 * 24 23 22
42 42 H 1.08994 * 110.57511 * 80.62396 * 24 23 22
43 43 H 0.96996 * 120.00303 * 359.97438 * 27 26 25
44 44 H 0.97000 * 119.99485 * 180.02562 * 27 26 25
45 45 H 1.09003 * 110.08074 * 330.45641 * 29 18 16
46 46 H 1.09001 * 110.08274 * 91.95401 * 29 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 1.2841 2.7465 0.0006
5 1 3.1029 1.6964 1.2124
6 1 3.1028 1.6966 -1.2125
7 6 2.0087 -1.2011 -0.0005
8 1 3.0887 -1.2011 -0.0010
9 8 1.3346 -2.3687 -0.0005
10 6 2.0687 -3.5028 -0.1076
11 6 3.4555 -3.4399 -0.0954
12 6 4.2013 -4.5967 -0.1998
13 6 3.5745 -5.8259 -0.3278
14 6 2.1987 -5.9069 -0.3470
15 6 1.4309 -4.7454 -0.2375
16 6 -0.0421 -4.8250 -0.2578
17 8 -0.6978 -3.8670 -0.6196
18 7 -0.6611 -5.9595 0.1248
19 6 -0.0190 -7.2381 0.4713
20 6 -0.9204 -7.8977 1.5333
21 1 -0.5157 -7.8017 2.5408
22 6 -1.1472 -9.3739 1.1507
23 6 -2.6565 -9.6077 1.4060
24 6 -3.2921 -8.2749 0.9395
25 6 -2.2920 -7.1949 1.3983
26 6 -2.7307 -6.5420 2.6837
27 7 -3.8977 -5.8695 2.7338
28 8 -2.0338 -6.6219 3.6731
29 6 -2.1116 -6.1638 0.2715
30 1 -0.4850 -0.8401 0.0004
31 1 3.9513 -2.4852 0.0000
32 1 5.2798 -4.5430 -0.1861
33 1 4.1669 -6.7249 -0.4126
34 1 1.7150 -6.8674 -0.4466
35 1 0.0502 -7.8735 -0.4116
36 1 0.9743 -7.0587 0.8826
37 1 -0.5477 -10.0282 1.7837
38 1 -0.9084 -9.5384 0.1000
39 1 -2.8474 -9.7767 2.4658
40 1 -3.0273 -10.4418 0.8104
41 1 -4.2599 -8.1261 1.4184
42 1 -3.3982 -8.2601 -0.1451
43 1 -4.4549 -5.8055 1.9425
44 1 -4.1798 -5.4490 3.5611
45 1 -2.5963 -5.2256 0.5416
46 1 -2.5315 -6.5473 -0.6585
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000887952398.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:08:05
Heat of formation + Delta-G solvation = -63.269223 kcal
Electronic energy + Delta-G solvation = -31101.199632 eV
Core-core repulsion = 26956.513587 eV
Total energy + Delta-G solvation = -4144.686044 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.24527 -39.58369 -38.41982 -37.47822 -36.50255 -34.71253 -33.95467 -32.30655
-31.40828 -30.33276 -29.31351 -28.90182 -26.06725 -24.96654 -24.76984 -22.72445
-21.93437 -21.67834 -20.93844 -19.39689 -19.11289 -18.39447 -17.92819 -16.75392
-16.61146 -16.24054 -15.90233 -15.60515 -15.31931 -14.80172 -14.53818 -14.33748
-14.21224 -14.13911 -13.79083 -13.70951 -13.61343 -13.17887 -12.94036 -12.59720
-12.36702 -12.27299 -11.76955 -11.51256 -11.43776 -11.36961 -11.32766 -11.08713
-10.96340 -10.84465 -10.80777 -10.55122 -10.43070 -10.28821 -9.96700 -9.79459
-9.59301 -9.07689 -8.80460 -8.41382 -8.31785 -7.37900 -6.78970 -4.06639
1.66395 2.25274 2.51020 3.22405 3.23209 3.28967 3.32241 3.45219
3.54734 3.94876 4.09539 4.21689 4.41917 4.55681 4.79880 4.84890
4.93274 4.96346 5.00353 5.13326 5.17493 5.26008 5.28909 5.38851
5.46075 5.48974 5.57711 5.61748 5.66385 5.72013 5.72225 5.76563
5.87605 5.94489 5.96449 6.09538 6.21304 6.44656 6.48878 6.65457
6.67345 6.90037 7.03363 7.18515 7.19737 7.46021 7.60359 7.90342
8.14424 8.38760 8.80950 8.90425 9.57541 10.65490
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.013276 B = 0.003592 C = 0.003038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2108.499832 B = 7792.433878 C = 9214.784489
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.863 5.863
2 C 0.014 3.986
3 Si 1.096 2.904
4 H -0.272 1.272
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.479 4.479
8 H 0.086 0.914
9 O -0.158 6.158
10 C 0.194 3.806
11 C -0.234 4.234
12 C -0.050 4.050
13 C -0.228 4.228
14 C -0.055 4.055
15 C -0.224 4.224
16 C 0.584 3.416
17 O -0.515 6.515
18 N -0.623 5.623
19 C 0.095 3.905
20 C -0.090 4.090
21 H 0.109 0.891
22 C -0.116 4.116
23 C -0.123 4.123
24 C -0.109 4.109
25 C -0.098 4.098
26 C 0.540 3.460
27 N -0.853 5.853
28 O -0.535 6.535
29 C 0.123 3.877
30 H 0.293 0.707
31 H 0.133 0.867
32 H 0.112 0.888
33 H 0.111 0.889
34 H 0.130 0.870
35 H 0.071 0.929
36 H 0.096 0.904
37 H 0.072 0.928
38 H 0.073 0.927
39 H 0.068 0.932
40 H 0.072 0.928
41 H 0.071 0.929
42 H 0.083 0.917
43 H 0.402 0.598
44 H 0.403 0.597
45 H 0.079 0.921
46 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.843 -19.030 1.179 19.672
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.493 5.493
2 C -0.194 4.194
3 Si 0.920 3.080
4 H -0.197 1.197
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.554 4.554
8 H 0.104 0.896
9 O -0.057 6.057
10 C 0.136 3.864
11 C -0.253 4.253
12 C -0.069 4.069
13 C -0.247 4.247
14 C -0.074 4.074
15 C -0.229 4.229
16 C 0.377 3.623
17 O -0.390 6.390
18 N -0.359 5.359
19 C -0.029 4.029
20 C -0.109 4.109
21 H 0.127 0.873
22 C -0.154 4.154
23 C -0.160 4.160
24 C -0.147 4.147
25 C -0.102 4.102
26 C 0.324 3.676
27 N -0.417 5.417
28 O -0.411 6.411
29 C 0.000 4.000
30 H 0.104 0.896
31 H 0.151 0.849
32 H 0.130 0.870
33 H 0.129 0.871
34 H 0.148 0.852
35 H 0.089 0.911
36 H 0.114 0.886
37 H 0.091 0.909
38 H 0.092 0.908
39 H 0.087 0.913
40 H 0.091 0.909
41 H 0.089 0.911
42 H 0.102 0.898
43 H 0.230 0.770
44 H 0.234 0.766
45 H 0.098 0.902
46 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -5.083 -16.747 1.495 17.565
hybrid contribution -0.024 -1.485 0.003 1.486
sum -5.107 -18.232 1.498 18.993
Atomic orbital electron populations
1.70455 1.06669 1.32841 1.39316 1.26619 0.96823 1.01154 0.94827
0.83124 0.74531 0.73246 0.77146 1.19678 1.20635 1.20592 1.22379
0.93199 0.82353 1.57502 0.89618 1.83780 1.35094 1.11918 1.74933
1.19047 0.89893 0.86518 0.90990 1.21149 0.93191 0.99452 1.11509
1.20929 0.98729 0.92290 0.94952 1.20512 0.94034 0.97190 1.12985
1.21371 0.94020 0.96376 0.95593 1.18674 0.91387 0.92326 1.20476
1.17948 0.87594 0.80240 0.76558 1.90843 1.66731 1.35288 1.46106
1.48344 1.06102 1.11453 1.70037 1.22802 0.98331 0.84850 0.96878
1.22681 0.92747 0.94249 1.01255 0.87313 1.22488 0.96344 0.94819
1.01762 1.22505 0.95332 0.96716 1.01492 1.22517 0.97064 0.93323
1.01766 1.22129 0.97934 0.96746 0.93406 1.20046 0.80526 0.77535
0.89482 1.43791 1.23265 1.57421 1.17181 1.90726 1.53377 1.60122
1.36866 1.21966 0.83729 0.98303 0.96050 0.89633 0.84935 0.87035
0.87065 0.85222 0.91071 0.88600 0.90938 0.90802 0.91308 0.90948
0.91062 0.89797 0.77000 0.76618 0.90245 0.90616
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -26.93 13.70 55.48 0.76 -26.17 16
2 C 0.01 0.41 5.49 -17.52 -0.10 0.32 16
3 Si 1.10 24.14 29.92 -169.99 -5.09 19.05 16
4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16
6 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16
7 C -0.48 -13.92 9.49 30.90 0.29 -13.63 16
8 H 0.09 2.29 5.21 -52.48 -0.27 2.02 16
9 O -0.16 -4.70 7.55 -19.28 -0.15 -4.85 16
10 C 0.19 4.95 6.63 -38.60 -0.26 4.70 16
11 C -0.23 -5.19 9.16 -39.44 -0.36 -5.56 16
12 C -0.05 -0.91 10.03 -39.53 -0.40 -1.31 16
13 C -0.23 -3.81 10.02 -39.61 -0.40 -4.20 16
14 C -0.06 -0.98 7.96 -39.20 -0.31 -1.29 16
15 C -0.22 -5.02 5.78 -104.81 -0.61 -5.62 16
16 C 0.58 13.18 7.62 -12.47 -0.09 13.09 16
17 O -0.51 -13.93 15.87 -14.79 -0.23 -14.16 16
18 N -0.62 -10.61 3.32 -172.57 -0.57 -11.18 16
19 C 0.09 1.22 4.74 -3.06 -0.01 1.20 16
20 C -0.09 -1.03 3.49 -88.52 -0.31 -1.34 16
21 H 0.11 1.49 6.80 -51.93 -0.35 1.14 16
22 C -0.12 -0.93 6.36 -25.14 -0.16 -1.09 16
23 C -0.12 -0.88 6.90 -24.78 -0.17 -1.06 16
24 C -0.11 -0.83 5.95 -25.14 -0.15 -0.98 16
25 C -0.10 -1.11 0.80 -153.73 -0.12 -1.23 16
26 C 0.54 7.24 6.73 -10.99 -0.07 7.16 16
27 N -0.85 -8.33 8.38 31.22 0.26 -8.07 16
28 O -0.54 -9.39 16.36 5.55 0.09 -9.30 16
29 C 0.12 1.69 6.13 -3.23 -0.02 1.67 16
30 H 0.29 9.68 7.97 -40.82 -0.33 9.35 16
31 H 0.13 2.93 5.64 -52.49 -0.30 2.64 16
32 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16
33 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16
34 H 0.13 1.83 4.50 -52.48 -0.24 1.59 16
35 H 0.07 0.74 6.82 -51.93 -0.35 0.39 16
36 H 0.10 1.31 5.28 -51.93 -0.27 1.03 16
37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.07 0.52 7.17 -51.93 -0.37 0.14 16
39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
41 H 0.07 0.46 7.64 -51.93 -0.40 0.06 16
42 H 0.08 0.55 7.17 -51.93 -0.37 0.18 16
43 H 0.40 2.81 8.78 -40.82 -0.36 2.45 16
44 H 0.40 3.59 8.93 -40.82 -0.36 3.23 16
45 H 0.08 1.23 7.46 -51.93 -0.39 0.84 16
46 H 0.08 0.87 7.12 -51.93 -0.37 0.50 16
LS Contribution 366.73 15.07 5.53 5.53
Total: -1.00 -38.29 366.73 -8.29 -46.57
By element:
Atomic # 1 Polarization: 17.40 SS G_CDS: -5.64 Total: 11.76 kcal
Atomic # 6 Polarization: -5.92 SS G_CDS: -3.25 Total: -9.17 kcal
Atomic # 7 Polarization: -45.87 SS G_CDS: 0.45 Total: -45.42 kcal
Atomic # 8 Polarization: -28.02 SS G_CDS: -0.29 Total: -28.31 kcal
Atomic # 14 Polarization: 24.14 SS G_CDS: -5.09 Total: 19.05 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -38.29 -8.29 -46.57 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000887952398.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.694 kcal
(2) G-P(sol) polarization free energy of solvation -38.285 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.575 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.269 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds