Wall clock time and date at job start Sat Apr 11 2020 07:08:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86806 * 119.99835 * 2 1
4 4 H 1.48503 * 109.47005 * 0.02562 * 3 2 1
5 5 H 1.48498 * 109.46894 * 120.00437 * 3 2 1
6 6 H 1.48501 * 109.47217 * 240.00316 * 3 2 1
7 7 C 1.38696 * 120.00245 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99927 * 179.97438 * 7 2 1
9 9 O 1.34815 * 119.99895 * 359.97438 * 7 2 1
10 10 C 1.35521 * 116.99927 * 174.93782 * 9 7 2
11 11 C 1.38829 * 120.16149 * 5.53995 * 10 9 7
12 12 C 1.38028 * 120.07412 * 179.76683 * 11 10 9
13 13 C 1.38573 * 120.39698 * 0.51011 * 12 11 10
14 14 C 1.37828 * 120.32405 * 359.73964 * 13 12 11
15 15 C 1.39659 * 119.92220 * 0.02562 * 14 13 12
16 16 C 1.47536 * 120.20064 * 179.97438 * 15 14 13
17 17 O 1.21593 * 120.00168 * 205.28227 * 16 15 14
18 18 N 1.34783 * 119.99725 * 25.28852 * 16 15 14
19 19 C 1.47215 * 126.69958 * 354.09577 * 18 16 15
20 20 C 1.54124 * 106.18982 * 148.67788 * 19 18 16
21 21 H 1.08999 * 112.46771 * 257.21459 * 20 19 18
22 22 C 1.54178 * 108.95365 * 132.91732 * 20 19 18
23 23 C 1.54847 * 104.30228 * 223.20630 * 22 20 19
24 24 C 1.54855 * 102.73580 * 38.13834 * 23 22 20
25 25 C 1.54178 * 104.29782 * 321.85970 * 24 23 22
26 26 C 1.50700 * 111.61973 * 260.77250 * 25 24 23
27 27 N 1.34774 * 119.99854 * 298.59291 * 26 25 24
28 28 O 1.21286 * 119.99652 * 118.58167 * 26 25 24
29 29 C 1.47216 * 126.69897 * 174.41479 * 18 16 15
30 30 H 0.97006 * 120.00117 * 180.02562 * 1 2 3
31 31 H 1.08001 * 119.96459 * 0.02562 * 11 10 9
32 32 H 1.07997 * 119.80367 * 180.22837 * 12 11 10
33 33 H 1.08000 * 119.83949 * 179.76627 * 13 12 11
34 34 H 1.08004 * 120.04119 * 180.02562 * 14 13 12
35 35 H 1.08995 * 110.08373 * 267.99108 * 19 18 16
36 36 H 1.09004 * 110.08112 * 29.54869 * 19 18 16
37 37 H 1.09000 * 110.46659 * 104.49617 * 22 20 19
38 38 H 1.09001 * 110.57747 * 341.96922 * 22 20 19
39 39 H 1.09001 * 110.75911 * 279.82268 * 23 22 20
40 40 H 1.09000 * 110.91783 * 156.52089 * 23 22 20
41 41 H 1.09002 * 110.46315 * 203.16190 * 24 23 22
42 42 H 1.08994 * 110.57511 * 80.62396 * 24 23 22
43 43 H 0.96996 * 120.00303 * 359.97438 * 27 26 25
44 44 H 0.97000 * 119.99485 * 180.02562 * 27 26 25
45 45 H 1.09003 * 110.08074 * 330.45641 * 29 18 16
46 46 H 1.09001 * 110.08274 * 91.95401 * 29 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 1.2841 2.7465 0.0006
5 1 3.1029 1.6964 1.2124
6 1 3.1028 1.6966 -1.2125
7 6 2.0087 -1.2011 -0.0005
8 1 3.0887 -1.2011 -0.0010
9 8 1.3346 -2.3687 -0.0005
10 6 2.0687 -3.5028 -0.1076
11 6 3.4555 -3.4399 -0.0954
12 6 4.2013 -4.5967 -0.1998
13 6 3.5745 -5.8259 -0.3278
14 6 2.1987 -5.9069 -0.3470
15 6 1.4309 -4.7454 -0.2375
16 6 -0.0421 -4.8250 -0.2578
17 8 -0.6978 -3.8670 -0.6196
18 7 -0.6611 -5.9595 0.1248
19 6 -0.0190 -7.2381 0.4713
20 6 -0.9204 -7.8977 1.5333
21 1 -0.5157 -7.8017 2.5408
22 6 -1.1472 -9.3739 1.1507
23 6 -2.6565 -9.6077 1.4060
24 6 -3.2921 -8.2749 0.9395
25 6 -2.2920 -7.1949 1.3983
26 6 -2.7307 -6.5420 2.6837
27 7 -3.8977 -5.8695 2.7338
28 8 -2.0338 -6.6219 3.6731
29 6 -2.1116 -6.1638 0.2715
30 1 -0.4850 -0.8401 0.0004
31 1 3.9513 -2.4852 0.0000
32 1 5.2798 -4.5430 -0.1861
33 1 4.1669 -6.7249 -0.4126
34 1 1.7150 -6.8674 -0.4466
35 1 0.0502 -7.8735 -0.4116
36 1 0.9743 -7.0587 0.8826
37 1 -0.5477 -10.0282 1.7837
38 1 -0.9084 -9.5384 0.1000
39 1 -2.8474 -9.7767 2.4658
40 1 -3.0273 -10.4418 0.8104
41 1 -4.2599 -8.1261 1.4184
42 1 -3.3982 -8.2601 -0.1451
43 1 -4.4549 -5.8055 1.9425
44 1 -4.1798 -5.4490 3.5611
45 1 -2.5963 -5.2256 0.5416
46 1 -2.5315 -6.5473 -0.6585
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000887952398.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:08:04
Heat of formation + Delta-G solvation = -92.998970 kcal
Electronic energy + Delta-G solvation = -31102.488810 eV
Core-core repulsion = 26956.513587 eV
Total energy + Delta-G solvation = -4145.975223 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.34346 -41.20518 -39.92564 -38.81518 -38.23953 -35.91972 -34.97766 -34.35942
-32.72514 -31.46268 -30.71486 -30.28230 -27.20882 -26.75719 -26.11233 -24.02418
-23.31003 -23.04654 -21.81062 -20.84014 -20.32181 -20.06761 -19.09512 -18.33993
-17.85794 -17.51244 -17.15699 -17.03644 -16.60336 -16.21496 -15.96525 -15.84447
-15.56414 -15.42892 -15.37631 -15.07592 -14.85106 -14.64319 -14.36360 -14.07167
-13.73381 -13.20116 -13.00573 -12.99768 -12.65658 -12.55871 -12.46748 -12.33697
-12.23698 -12.05343 -11.96828 -11.83939 -11.59079 -11.51920 -11.48134 -11.03997
-10.82106 -10.79555 -10.76601 -9.95728 -9.78915 -9.15669 -8.99522 -6.29357
0.02975 0.60560 1.43210 1.43263 1.58084 1.74742 1.76642 1.95766
2.32096 2.42610 2.80781 3.04117 3.10379 3.24520 3.32048 3.61904
3.75481 3.92793 3.95724 4.03885 4.16534 4.19453 4.25437 4.30351
4.41131 4.45537 4.50034 4.57314 4.62429 4.73724 4.79321 4.80857
4.90480 4.98897 5.02075 5.12611 5.17434 5.20729 5.27439 5.31898
5.40979 5.49509 5.56466 5.59532 5.74540 5.97569 6.19051 6.28744
6.40287 6.81803 7.17390 7.17521 7.59164 8.43614
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.013276 B = 0.003592 C = 0.003038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2108.499832 B = 7792.433878 C = 9214.784489
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.908 5.908
2 C -0.045 4.045
3 Si 1.148 2.852
4 H -0.274 1.274
5 H -0.256 1.256
6 H -0.256 1.256
7 C -0.499 4.499
8 H 0.097 0.903
9 O -0.220 6.220
10 C 0.151 3.849
11 C -0.255 4.255
12 C -0.041 4.041
13 C -0.194 4.194
14 C -0.049 4.049
15 C -0.241 4.241
16 C 0.571 3.429
17 O -0.579 6.579
18 N -0.619 5.619
19 C 0.086 3.914
20 C -0.091 4.091
21 H 0.081 0.919
22 C -0.108 4.108
23 C -0.119 4.119
24 C -0.102 4.102
25 C -0.091 4.091
26 C 0.528 3.472
27 N -0.838 5.838
28 O -0.586 6.586
29 C 0.116 3.884
30 H 0.260 0.740
31 H 0.123 0.877
32 H 0.157 0.843
33 H 0.171 0.829
34 H 0.175 0.825
35 H 0.114 0.886
36 H 0.089 0.911
37 H 0.081 0.919
38 H 0.097 0.903
39 H 0.057 0.943
40 H 0.099 0.901
41 H 0.083 0.917
42 H 0.105 0.895
43 H 0.416 0.584
44 H 0.407 0.593
45 H 0.050 0.950
46 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.807 -23.932 0.072 24.096
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.242 4.242
3 Si 0.962 3.038
4 H -0.198 1.198
5 H -0.181 1.181
6 H -0.180 1.180
7 C -0.574 4.574
8 H 0.115 0.885
9 O -0.124 6.124
10 C 0.097 3.903
11 C -0.274 4.274
12 C -0.059 4.059
13 C -0.213 4.213
14 C -0.067 4.067
15 C -0.245 4.245
16 C 0.364 3.636
17 O -0.459 6.459
18 N -0.353 5.353
19 C -0.035 4.035
20 C -0.110 4.110
21 H 0.099 0.901
22 C -0.145 4.145
23 C -0.157 4.157
24 C -0.140 4.140
25 C -0.096 4.096
26 C 0.313 3.687
27 N -0.402 5.402
28 O -0.466 6.466
29 C -0.006 4.006
30 H 0.068 0.932
31 H 0.140 0.860
32 H 0.175 0.825
33 H 0.188 0.812
34 H 0.192 0.808
35 H 0.132 0.868
36 H 0.107 0.893
37 H 0.100 0.900
38 H 0.115 0.885
39 H 0.076 0.924
40 H 0.118 0.882
41 H 0.101 0.899
42 H 0.124 0.876
43 H 0.247 0.753
44 H 0.238 0.762
45 H 0.069 0.931
46 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -3.040 -21.777 0.386 21.992
hybrid contribution -0.524 -0.469 0.373 0.796
sum -3.565 -22.246 0.759 22.543
Atomic orbital electron populations
1.70615 1.08046 1.30315 1.45147 1.28615 0.96807 1.05262 0.93523
0.82600 0.73762 0.68382 0.79008 1.19836 1.18078 1.18031 1.22785
0.93875 0.83148 1.57604 0.88520 1.83798 1.36439 1.12929 1.79262
1.19899 0.91716 0.86726 0.91944 1.21316 0.92170 1.01124 1.12805
1.21487 1.00878 0.91177 0.92316 1.21280 0.93815 0.98614 1.07548
1.21947 0.94713 0.96318 0.93674 1.19204 0.92192 0.93016 1.20105
1.18193 0.87974 0.80917 0.76558 1.90813 1.67903 1.37906 1.49327
1.48349 1.08000 1.11287 1.67661 1.23194 0.98050 0.83219 0.99024
1.22658 0.92093 0.96919 0.99372 0.90106 1.22495 0.97123 0.91664
1.03239 1.22515 0.94678 0.97058 1.01425 1.22591 0.96396 0.91882
1.03134 1.22152 0.99458 0.96785 0.91158 1.20605 0.80761 0.77506
0.89826 1.43725 1.22449 1.55908 1.18077 1.90700 1.54981 1.62197
1.38751 1.22281 0.81781 0.98052 0.98517 0.93187 0.85966 0.82496
0.81205 0.80849 0.86798 0.89260 0.90033 0.88495 0.92371 0.88211
0.89861 0.87621 0.75265 0.76161 0.93096 0.87367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -62.07 13.70 21.62 0.30 -61.77 16
2 C -0.04 -2.77 5.49 84.85 0.47 -2.31 16
3 Si 1.15 50.92 29.92 68.60 2.05 52.98 16
4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
5 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16
6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16
7 C -0.50 -31.31 9.49 67.93 0.64 -30.67 16
8 H 0.10 5.52 5.21 -2.91 -0.02 5.50 16
9 O -0.22 -14.37 7.55 -0.88 -0.01 -14.37 16
10 C 0.15 8.11 6.63 22.91 0.15 8.26 16
11 C -0.25 -11.41 9.16 22.36 0.20 -11.21 16
12 C -0.04 -1.31 10.03 22.30 0.22 -1.08 16
13 C -0.19 -5.34 10.02 22.25 0.22 -5.12 16
14 C -0.05 -1.55 7.96 22.52 0.18 -1.37 16
15 C -0.24 -10.97 5.78 -19.99 -0.12 -11.08 16
16 C 0.57 27.02 7.62 86.69 0.66 27.69 16
17 O -0.58 -34.25 15.87 15.18 0.24 -34.01 16
18 N -0.62 -20.95 3.32 -818.16 -2.71 -23.66 16
19 C 0.09 1.96 4.74 86.62 0.41 2.37 16
20 C -0.09 -1.88 3.49 -9.43 -0.03 -1.91 16
21 H 0.08 2.18 6.80 -2.39 -0.02 2.16 16
22 C -0.11 -1.23 6.36 31.62 0.20 -1.03 16
23 C -0.12 -1.20 6.90 31.86 0.22 -0.98 16
24 C -0.10 -1.19 5.95 31.63 0.19 -1.00 16
25 C -0.09 -1.94 0.80 -51.68 -0.04 -1.98 16
26 C 0.53 14.42 6.73 87.66 0.59 15.01 16
27 N -0.84 -16.78 8.38 -173.53 -1.45 -18.23 16
28 O -0.59 -21.51 16.36 -3.05 -0.05 -21.56 16
29 C 0.12 3.15 6.13 86.51 0.53 3.68 16
30 H 0.26 19.23 7.97 -92.70 -0.74 18.49 16
31 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16
32 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16
33 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16
34 H 0.17 3.93 4.50 -2.91 -0.01 3.92 16
35 H 0.11 1.70 6.82 -2.39 -0.02 1.68 16
36 H 0.09 2.14 5.28 -2.39 -0.01 2.13 16
37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
38 H 0.10 0.72 7.17 -2.39 -0.02 0.70 16
39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16
41 H 0.08 0.80 7.64 -2.39 -0.02 0.78 16
42 H 0.11 0.84 7.17 -2.39 -0.02 0.83 16
43 H 0.42 5.77 8.78 -92.71 -0.81 4.96 16
44 H 0.41 7.61 8.93 -92.71 -0.83 6.78 16
45 H 0.05 1.67 7.46 -2.39 -0.02 1.65 16
46 H 0.11 2.24 7.12 -2.39 -0.02 2.23 16
Total: -1.00 -100.16 366.73 2.53 -97.63
By element:
Atomic # 1 Polarization: 36.28 SS G_CDS: -0.54 Total: 35.74 kcal
Atomic # 6 Polarization: -17.45 SS G_CDS: 4.70 Total: -12.74 kcal
Atomic # 7 Polarization: -99.79 SS G_CDS: -3.87 Total: -103.66 kcal
Atomic # 8 Polarization: -70.13 SS G_CDS: 0.18 Total: -69.94 kcal
Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.98 kcal
Total: -100.16 2.53 -97.63 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000887952398.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.635 kcal
(2) G-P(sol) polarization free energy of solvation -100.161 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.634 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.999 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds