Wall clock time and date at job start Sat Apr 11 2020 07:05:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38352 * 119.84973 * 2 1
4 4 C 1.37957 * 120.15478 * 179.97438 * 3 2 1
5 5 C 1.39611 * 119.84357 * 0.02562 * 4 3 2
6 6 C 1.47644 * 120.14652 * 179.97438 * 5 4 3
7 7 N 1.29082 * 125.86999 * 359.97438 * 6 5 4
8 8 O 1.41386 * 112.87570 * 180.29365 * 7 6 5
9 9 C 1.44199 * 107.59567 * 342.50416 * 8 7 6
10 10 H 1.08999 * 110.97863 * 143.55440 * 9 8 7
11 11 C 1.50707 * 110.97126 * 267.28881 * 9 8 7
12 12 O 1.21276 * 120.00026 * 3.54542 * 11 9 8
13 13 N 1.34780 * 119.99753 * 183.54698 * 11 9 8
14 14 C 1.47422 * 125.64902 * 0.02562 * 13 11 9
15 15 C 1.54917 * 104.83080 * 155.85227 * 14 13 11
16 16 C 1.55163 * 101.58008 * 37.00874 * 15 14 13
17 17 O 1.42897 * 110.72026 * 82.86307 * 16 15 14
18 18 C 1.50699 * 110.86763 * 206.06572 * 16 15 14
19 19 H 1.07994 * 120.00385 * 20.75548 * 18 16 15
20 20 C 1.37877 * 119.99438 * 200.75286 * 18 16 15
21 21 N 1.31520 * 119.99750 * 173.62529 * 20 18 16
22 22 Si 1.86798 * 120.00320 * 353.62337 * 20 18 16
23 23 H 1.48502 * 109.46929 * 86.34093 * 22 20 18
24 24 H 1.48505 * 109.47389 * 206.33581 * 22 20 18
25 25 H 1.48499 * 109.47328 * 326.34039 * 22 20 18
26 26 C 1.47023 * 125.64594 * 180.02562 * 13 11 9
27 27 C 1.51694 * 125.86183 * 179.97438 * 6 5 4
28 28 C 1.39610 * 119.70456 * 0.25790 * 5 4 3
29 29 C 1.37956 * 119.84660 * 359.49031 * 28 5 4
30 30 H 1.08999 * 109.47228 * 90.00014 * 1 2 3
31 31 H 1.09000 * 109.47164 * 209.99879 * 1 2 3
32 32 H 1.08999 * 109.47466 * 330.00047 * 1 2 3
33 33 H 1.08005 * 119.92739 * 359.97438 * 3 2 1
34 34 H 1.07993 * 120.07938 * 180.02562 * 4 3 2
35 35 H 1.09005 * 110.36579 * 274.68586 * 14 13 11
36 36 H 1.08994 * 110.36775 * 37.01229 * 14 13 11
37 37 H 1.08995 * 111.00237 * 155.07883 * 15 14 13
38 38 H 1.08996 * 110.99855 * 278.93644 * 15 14 13
39 39 H 0.96693 * 113.99835 * 61.13634 * 17 16 15
40 40 H 0.97001 * 119.99521 * 179.97438 * 21 20 18
41 41 H 1.09009 * 109.87711 * 300.49547 * 26 13 11
42 42 H 1.08999 * 109.88477 * 61.65746 * 26 13 11
43 43 H 1.08998 * 110.79396 * 77.15618 * 27 6 5
44 44 H 1.08996 * 110.79418 * 313.67795 * 27 6 5
45 45 H 1.08007 * 120.08019 * 179.72127 * 28 5 4
46 46 H 1.08004 * 119.92643 * 180.27826 * 29 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1956 1.2000 0.0000
4 6 3.5751 1.2073 0.0005
5 6 4.2763 0.0001 0.0005
6 6 5.7528 0.0001 0.0005
7 7 6.5091 1.0462 0.0001
8 8 7.8867 0.7283 -0.0065
9 6 8.0185 -0.6481 0.4027
10 1 8.8240 -1.1415 -0.1411
11 6 8.2344 -0.7502 1.8907
12 8 8.2121 0.2497 2.5767
13 7 8.4524 -1.9527 2.4591
14 6 8.5055 -3.2425 1.7472
15 6 9.3594 -4.1620 2.6557
16 6 8.9061 -3.7109 4.0694
17 8 7.6922 -4.3652 4.4439
18 6 9.9859 -3.9712 5.0879
19 1 11.0107 -4.0925 4.7694
20 6 9.6655 -4.0543 6.4263
21 7 10.5826 -4.4048 7.3015
22 14 7.9289 -3.6691 6.9967
23 1 7.0921 -4.8918 6.8957
24 1 7.9623 -3.2074 8.4077
25 1 7.3518 -2.6021 6.1402
26 6 8.6766 -2.1952 3.8917
27 6 6.6415 -1.2292 0.0011
28 6 3.5752 -1.2072 -0.0055
29 6 2.1956 -1.2000 -0.0007
30 1 -0.3633 0.0000 -1.0276
31 1 -0.3633 -0.8900 0.5138
32 1 -0.3634 0.8900 0.5138
33 1 1.6519 2.1332 -0.0004
34 1 4.1114 2.1447 0.0010
35 1 7.5022 -3.6521 1.6289
36 1 8.9832 -3.1200 0.7753
37 1 9.1197 -5.2115 2.4850
38 1 10.4234 -3.9769 2.5090
39 1 7.7623 -5.3286 4.4887
40 1 10.3572 -4.4629 8.2431
41 1 9.5559 -1.6454 4.2276
42 1 7.8016 -1.8833 4.4619
43 1 6.6846 -1.6760 -0.9922
44 1 6.2979 -1.9548 0.7383
45 1 4.1115 -2.1447 -0.0100
46 1 1.6520 -2.1332 -0.0008
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000911526732.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:16
Heat of formation + Delta-G solvation = -30.189836 kcal
Electronic energy + Delta-G solvation = -30122.985702 eV
Core-core repulsion = 25979.734087 eV
Total energy + Delta-G solvation = -4143.251615 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.93415 -39.65096 -38.97004 -37.42763 -34.91986 -34.39375 -32.44979 -31.88841
-31.73854 -31.15361 -29.97890 -28.57215 -27.38274 -25.77042 -24.19767 -22.96103
-22.63247 -22.37586 -20.37462 -19.87381 -19.29491 -17.59599 -17.54242 -17.09154
-16.06974 -15.93104 -15.69306 -15.50541 -15.30373 -15.11664 -14.63855 -14.44966
-14.13387 -14.11176 -13.81977 -13.76725 -13.28016 -13.26384 -12.78591 -12.66611
-12.63815 -12.60322 -12.33225 -12.06433 -11.99203 -11.85917 -11.68802 -11.59665
-11.43626 -11.05080 -10.86974 -10.68115 -10.48776 -10.36907 -10.27911 -9.42020
-9.30433 -9.28749 -8.74717 -8.66350 -8.58325 -8.23435 -6.27034 -4.40179
0.42088 1.06980 1.97871 2.58180 2.93909 3.17491 3.39945 3.47267
3.49833 3.62621 3.71904 4.15327 4.23940 4.41537 4.43052 4.48873
4.52896 4.65402 4.84076 4.94224 4.96609 5.03304 5.05530 5.07517
5.16045 5.19442 5.21559 5.29772 5.39580 5.44022 5.49947 5.58057
5.68308 5.73019 5.85144 6.00413 6.07117 6.10320 6.21888 6.41811
6.48926 6.54169 6.57725 6.64597 6.93227 7.15801 7.38161 7.79564
8.05205 8.35202 8.56020 8.74926 9.33963 10.81761
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.012894 B = 0.003026 C = 0.002698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2170.949651 B = 9251.568740 C =10376.044810
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.069 4.069
3 C -0.124 4.124
4 C -0.074 4.074
5 C -0.044 4.044
6 C 0.121 3.879
7 N -0.272 5.272
8 O -0.164 6.164
9 C 0.030 3.970
10 H 0.139 0.861
11 C 0.505 3.495
12 O -0.523 6.523
13 N -0.607 5.607
14 C 0.096 3.904
15 C -0.146 4.146
16 C 0.220 3.780
17 O -0.565 6.565
18 C -0.555 4.555
19 H 0.082 0.918
20 C 0.077 3.923
21 N -0.884 5.884
22 Si 0.938 3.062
23 H -0.287 1.287
24 H -0.320 1.320
25 H -0.268 1.268
26 C 0.113 3.887
27 C -0.138 4.138
28 C -0.081 4.081
29 C -0.123 4.123
30 H 0.073 0.927
31 H 0.069 0.931
32 H 0.068 0.932
33 H 0.128 0.872
34 H 0.133 0.867
35 H 0.067 0.933
36 H 0.066 0.934
37 H 0.078 0.922
38 H 0.080 0.920
39 H 0.373 0.627
40 H 0.268 0.732
41 H 0.084 0.916
42 H 0.068 0.932
43 H 0.116 0.884
44 H 0.109 0.891
45 H 0.131 0.869
46 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.989 2.021 -19.270 25.769
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.070 4.070
3 C -0.142 4.142
4 C -0.094 4.094
5 C -0.046 4.046
6 C -0.069 4.069
7 N -0.012 5.012
8 O -0.183 6.183
9 C -0.032 4.032
10 H 0.157 0.843
11 C 0.291 3.709
12 O -0.399 6.399
13 N -0.343 5.343
14 C -0.027 4.027
15 C -0.185 4.185
16 C 0.180 3.820
17 O -0.373 6.373
18 C -0.592 4.592
19 H 0.100 0.900
20 C -0.129 4.129
21 N -0.518 5.518
22 Si 0.772 3.228
23 H -0.215 1.215
24 H -0.251 1.251
25 H -0.194 1.194
26 C -0.008 4.008
27 C -0.177 4.177
28 C -0.101 4.101
29 C -0.141 4.141
30 H 0.092 0.908
31 H 0.088 0.912
32 H 0.087 0.913
33 H 0.146 0.854
34 H 0.151 0.849
35 H 0.086 0.914
36 H 0.084 0.916
37 H 0.097 0.903
38 H 0.099 0.901
39 H 0.222 0.778
40 H 0.077 0.923
41 H 0.102 0.898
42 H 0.086 0.914
43 H 0.134 0.866
44 H 0.128 0.872
45 H 0.148 0.852
46 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -16.856 4.468 -18.793 25.637
hybrid contribution -0.273 -1.420 0.501 1.531
sum -17.129 3.047 -18.292 25.245
Atomic orbital electron populations
1.20854 0.90859 1.03186 1.02565 1.20136 0.96414 0.93151 0.97285
1.21007 0.93700 0.97927 1.01564 1.21355 0.94207 0.97590 0.96275
1.17759 0.87026 0.94476 1.05296 1.24231 0.94296 0.92543 0.95815
1.78401 0.89048 1.21880 1.11872 1.91320 1.15688 1.25915 1.85337
1.23598 0.99650 0.85567 0.94383 0.84336 1.20290 0.78420 0.82843
0.89379 1.90745 1.50349 1.35110 1.63667 1.48713 1.69492 1.05616
1.10466 1.22450 1.00323 0.84179 0.95761 1.23375 0.99942 0.98412
0.96750 1.20052 0.82955 0.87545 0.91492 1.86151 1.37296 1.23781
1.90063 1.21172 0.94648 1.52670 0.90693 0.89984 1.25132 0.98656
0.92571 0.96529 1.69954 1.34650 1.44444 1.02758 0.85928 0.82871
0.79352 0.74693 1.21464 1.25073 1.19352 1.22786 1.01845 0.97805
0.78375 1.22978 0.90696 0.98655 1.05390 1.21230 0.94353 0.96899
0.97631 1.20969 0.93641 0.97926 1.01558 0.90826 0.91208 0.91266
0.85362 0.84882 0.91445 0.91599 0.90313 0.90114 0.77838 0.92255
0.89824 0.91406 0.86588 0.87223 0.85153 0.85237
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.63 10.00 36.00 0.36 -0.27 16
2 C -0.07 -0.55 5.89 -104.54 -0.62 -1.17 16
3 C -0.12 -1.09 9.68 -39.64 -0.38 -1.47 16
4 C -0.07 -0.81 9.69 -39.17 -0.38 -1.18 16
5 C -0.04 -0.51 5.87 -105.03 -0.62 -1.12 16
6 C 0.12 1.59 7.16 -79.42 -0.57 1.02 16
7 N -0.27 -4.39 12.12 35.30 0.43 -3.96 16
8 O -0.16 -2.79 11.82 -30.20 -0.36 -3.15 16
9 C 0.03 0.43 3.47 -26.95 -0.09 0.33 16
10 H 0.14 1.47 7.56 -51.93 -0.39 1.07 16
11 C 0.50 9.41 7.17 -10.98 -0.08 9.33 16
12 O -0.52 -12.28 16.92 -13.28 -0.22 -12.50 16
13 N -0.61 -10.94 3.33 -170.51 -0.57 -11.51 16
14 C 0.10 1.31 5.96 -2.53 -0.02 1.30 16
15 C -0.15 -2.37 6.24 -24.57 -0.15 -2.52 16
16 C 0.22 4.60 0.68 -89.94 -0.06 4.54 16
17 O -0.57 -11.38 8.88 -35.23 -0.31 -11.69 16
18 C -0.55 -14.22 8.71 -34.44 -0.30 -14.52 16
19 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16
20 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16
21 N -0.88 -25.77 13.96 55.43 0.77 -25.00 16
22 Si 0.94 23.05 24.90 -169.99 -4.23 18.81 16
23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
24 H -0.32 -8.14 7.11 56.52 0.40 -7.74 16
25 H -0.27 -6.67 5.18 56.52 0.29 -6.38 16
26 C 0.11 2.47 5.64 -3.06 -0.02 2.45 16
27 C -0.14 -1.49 5.48 -26.47 -0.14 -1.64 16
28 C -0.08 -0.74 9.61 -39.17 -0.38 -1.12 16
29 C -0.12 -0.99 9.68 -39.64 -0.38 -1.37 16
30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16
32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16
33 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16
34 H 0.13 1.46 7.84 -52.49 -0.41 1.05 16
35 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16
36 H 0.07 0.69 7.29 -51.93 -0.38 0.31 16
37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16
38 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16
39 H 0.37 6.39 9.07 45.56 0.41 6.80 16
40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16
41 H 0.08 1.98 7.82 -51.92 -0.41 1.58 16
42 H 0.07 1.63 6.30 -51.93 -0.33 1.30 16
43 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16
44 H 0.11 1.14 6.87 -51.93 -0.36 0.79 16
45 H 0.13 0.94 7.38 -52.48 -0.39 0.55 16
46 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16
LS Contribution 376.54 15.07 5.67 5.67
Total: -1.00 -35.50 376.54 -8.42 -43.93
By element:
Atomic # 1 Polarization: 10.49 SS G_CDS: -5.68 Total: 4.81 kcal
Atomic # 6 Polarization: -1.49 SS G_CDS: -3.92 Total: -5.41 kcal
Atomic # 7 Polarization: -41.11 SS G_CDS: 0.63 Total: -40.47 kcal
Atomic # 8 Polarization: -26.45 SS G_CDS: -0.89 Total: -27.34 kcal
Atomic # 14 Polarization: 23.05 SS G_CDS: -4.23 Total: 18.81 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -35.50 -8.42 -43.93 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000911526732.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.738 kcal
(2) G-P(sol) polarization free energy of solvation -35.505 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.767 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.190 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds