Wall clock time and date at job start Sat Apr 11 2020 07:05:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38352 * 119.84973 * 2 1
4 4 C 1.37957 * 120.15478 * 179.97438 * 3 2 1
5 5 C 1.39611 * 119.84357 * 0.02562 * 4 3 2
6 6 C 1.47644 * 120.14652 * 179.97438 * 5 4 3
7 7 N 1.29082 * 125.86999 * 359.97438 * 6 5 4
8 8 O 1.41386 * 112.87570 * 180.29365 * 7 6 5
9 9 C 1.44199 * 107.59567 * 342.50416 * 8 7 6
10 10 H 1.08999 * 110.97863 * 143.55440 * 9 8 7
11 11 C 1.50707 * 110.97126 * 267.28881 * 9 8 7
12 12 O 1.21276 * 120.00026 * 3.54542 * 11 9 8
13 13 N 1.34780 * 119.99753 * 183.54698 * 11 9 8
14 14 C 1.47422 * 125.64902 * 0.02562 * 13 11 9
15 15 C 1.54917 * 104.83080 * 155.85227 * 14 13 11
16 16 C 1.55163 * 101.58008 * 37.00874 * 15 14 13
17 17 O 1.42897 * 110.72026 * 82.86307 * 16 15 14
18 18 C 1.50699 * 110.86763 * 206.06572 * 16 15 14
19 19 H 1.07994 * 120.00385 * 20.75548 * 18 16 15
20 20 C 1.37877 * 119.99438 * 200.75286 * 18 16 15
21 21 N 1.31520 * 119.99750 * 173.62529 * 20 18 16
22 22 Si 1.86798 * 120.00320 * 353.62337 * 20 18 16
23 23 H 1.48502 * 109.46929 * 86.34093 * 22 20 18
24 24 H 1.48505 * 109.47389 * 206.33581 * 22 20 18
25 25 H 1.48499 * 109.47328 * 326.34039 * 22 20 18
26 26 C 1.47023 * 125.64594 * 180.02562 * 13 11 9
27 27 C 1.51694 * 125.86183 * 179.97438 * 6 5 4
28 28 C 1.39610 * 119.70456 * 0.25790 * 5 4 3
29 29 C 1.37956 * 119.84660 * 359.49031 * 28 5 4
30 30 H 1.08999 * 109.47228 * 90.00014 * 1 2 3
31 31 H 1.09000 * 109.47164 * 209.99879 * 1 2 3
32 32 H 1.08999 * 109.47466 * 330.00047 * 1 2 3
33 33 H 1.08005 * 119.92739 * 359.97438 * 3 2 1
34 34 H 1.07993 * 120.07938 * 180.02562 * 4 3 2
35 35 H 1.09005 * 110.36579 * 274.68586 * 14 13 11
36 36 H 1.08994 * 110.36775 * 37.01229 * 14 13 11
37 37 H 1.08995 * 111.00237 * 155.07883 * 15 14 13
38 38 H 1.08996 * 110.99855 * 278.93644 * 15 14 13
39 39 H 0.96693 * 113.99835 * 61.13634 * 17 16 15
40 40 H 0.97001 * 119.99521 * 179.97438 * 21 20 18
41 41 H 1.09009 * 109.87711 * 300.49547 * 26 13 11
42 42 H 1.08999 * 109.88477 * 61.65746 * 26 13 11
43 43 H 1.08998 * 110.79396 * 77.15618 * 27 6 5
44 44 H 1.08996 * 110.79418 * 313.67795 * 27 6 5
45 45 H 1.08007 * 120.08019 * 179.72127 * 28 5 4
46 46 H 1.08004 * 119.92643 * 180.27826 * 29 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1956 1.2000 0.0000
4 6 3.5751 1.2073 0.0005
5 6 4.2763 0.0001 0.0005
6 6 5.7528 0.0001 0.0005
7 7 6.5091 1.0462 0.0001
8 8 7.8867 0.7283 -0.0065
9 6 8.0185 -0.6481 0.4027
10 1 8.8240 -1.1415 -0.1411
11 6 8.2344 -0.7502 1.8907
12 8 8.2121 0.2497 2.5767
13 7 8.4524 -1.9527 2.4591
14 6 8.5055 -3.2425 1.7472
15 6 9.3594 -4.1620 2.6557
16 6 8.9061 -3.7109 4.0694
17 8 7.6922 -4.3652 4.4439
18 6 9.9859 -3.9712 5.0879
19 1 11.0107 -4.0925 4.7694
20 6 9.6655 -4.0543 6.4263
21 7 10.5826 -4.4048 7.3015
22 14 7.9289 -3.6691 6.9967
23 1 7.0921 -4.8918 6.8957
24 1 7.9623 -3.2074 8.4077
25 1 7.3518 -2.6021 6.1402
26 6 8.6766 -2.1952 3.8917
27 6 6.6415 -1.2292 0.0011
28 6 3.5752 -1.2072 -0.0055
29 6 2.1956 -1.2000 -0.0007
30 1 -0.3633 0.0000 -1.0276
31 1 -0.3633 -0.8900 0.5138
32 1 -0.3634 0.8900 0.5138
33 1 1.6519 2.1332 -0.0004
34 1 4.1114 2.1447 0.0010
35 1 7.5022 -3.6521 1.6289
36 1 8.9832 -3.1200 0.7753
37 1 9.1197 -5.2115 2.4850
38 1 10.4234 -3.9769 2.5090
39 1 7.7623 -5.3286 4.4887
40 1 10.3572 -4.4629 8.2431
41 1 9.5559 -1.6454 4.2276
42 1 7.8016 -1.8833 4.4619
43 1 6.6846 -1.6760 -0.9922
44 1 6.2979 -1.9548 0.7383
45 1 4.1115 -2.1447 -0.0100
46 1 1.6520 -2.1332 -0.0008
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000911526732.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:16
Heat of formation + Delta-G solvation = -55.988508 kcal
Electronic energy + Delta-G solvation = -30124.104416 eV
Core-core repulsion = 25979.734087 eV
Total energy + Delta-G solvation = -4144.370329 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.06485 -40.69866 -40.01051 -38.94591 -36.46531 -35.24035 -34.49818 -32.86461
-32.62796 -32.00749 -31.26291 -30.11069 -28.01854 -27.37200 -25.57279 -24.07375
-23.35948 -23.25779 -21.67803 -21.12445 -20.52978 -19.40245 -18.81571 -18.15020
-17.30826 -17.17155 -16.94761 -16.65171 -16.38234 -16.15953 -16.05873 -15.72514
-15.43029 -14.97522 -14.86156 -14.59313 -14.43923 -14.36215 -14.17845 -14.02995
-13.75905 -13.69665 -13.45311 -13.31814 -13.12452 -13.01659 -12.87904 -12.61013
-12.40573 -12.30804 -12.14234 -12.12623 -12.06040 -11.75352 -11.59629 -11.27274
-10.75805 -10.60603 -10.35237 -9.96678 -9.74683 -9.42253 -8.40533 -6.53201
-0.35698 0.41069 1.13468 1.30889 1.40522 1.46000 1.63638 1.72340
1.99679 2.35945 2.77917 2.85394 2.92957 3.21296 3.24960 3.34572
3.48768 3.77195 3.89913 3.93991 3.98322 4.03513 4.17656 4.29429
4.34483 4.38637 4.43756 4.45774 4.48180 4.57276 4.66652 4.80075
4.84380 4.85278 4.87886 4.92321 5.08581 5.09670 5.25669 5.26819
5.32765 5.39085 5.39171 5.49919 5.61011 5.95248 6.03326 6.19137
6.42746 6.56596 6.94335 7.01892 7.27646 8.72442
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.012894 B = 0.003026 C = 0.002698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2170.949651 B = 9251.568740 C =10376.044810
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.066 4.066
3 C -0.133 4.133
4 C -0.094 4.094
5 C -0.075 4.075
6 C 0.131 3.869
7 N -0.324 5.324
8 O -0.197 6.197
9 C 0.034 3.966
10 H 0.182 0.818
11 C 0.496 3.504
12 O -0.588 6.588
13 N -0.605 5.605
14 C 0.095 3.905
15 C -0.138 4.138
16 C 0.219 3.781
17 O -0.565 6.565
18 C -0.547 4.547
19 H 0.050 0.950
20 C 0.029 3.971
21 N -0.931 5.931
22 Si 0.991 3.009
23 H -0.263 1.263
24 H -0.337 1.337
25 H -0.277 1.277
26 C 0.118 3.882
27 C -0.128 4.128
28 C -0.076 4.076
29 C -0.127 4.127
30 H 0.087 0.913
31 H 0.081 0.919
32 H 0.073 0.927
33 H 0.143 0.857
34 H 0.116 0.884
35 H 0.100 0.900
36 H 0.114 0.886
37 H 0.112 0.888
38 H 0.070 0.930
39 H 0.389 0.611
40 H 0.267 0.733
41 H 0.047 0.953
42 H 0.039 0.961
43 H 0.167 0.833
44 H 0.122 0.878
45 H 0.156 0.844
46 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.098 -0.763 -22.534 30.204
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.067 4.067
3 C -0.151 4.151
4 C -0.114 4.114
5 C -0.076 4.076
6 C -0.058 4.058
7 N -0.067 5.067
8 O -0.213 6.213
9 C -0.028 4.028
10 H 0.199 0.801
11 C 0.285 3.715
12 O -0.468 6.468
13 N -0.339 5.339
14 C -0.025 4.025
15 C -0.176 4.176
16 C 0.178 3.822
17 O -0.375 6.375
18 C -0.585 4.585
19 H 0.068 0.932
20 C -0.171 4.171
21 N -0.569 5.569
22 Si 0.824 3.176
23 H -0.189 1.189
24 H -0.269 1.269
25 H -0.203 1.203
26 C -0.006 4.006
27 C -0.167 4.167
28 C -0.096 4.096
29 C -0.144 4.144
30 H 0.105 0.895
31 H 0.099 0.901
32 H 0.092 0.908
33 H 0.161 0.839
34 H 0.134 0.866
35 H 0.118 0.882
36 H 0.132 0.868
37 H 0.130 0.870
38 H 0.089 0.911
39 H 0.240 0.760
40 H 0.076 0.924
41 H 0.065 0.935
42 H 0.058 0.942
43 H 0.185 0.815
44 H 0.140 0.860
45 H 0.174 0.826
46 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -19.963 1.623 -22.110 29.833
hybrid contribution 0.615 -0.538 1.500 1.708
sum -19.348 1.085 -20.610 28.289
Atomic orbital electron populations
1.20927 0.88825 1.04021 1.03647 1.20539 0.97962 0.92820 0.95404
1.21232 0.92978 0.99348 1.01507 1.21420 0.95291 0.97258 0.97411
1.17951 0.86318 0.95616 1.07756 1.24802 0.95201 0.93141 0.92608
1.78434 0.88857 1.23553 1.15872 1.91284 1.16863 1.27694 1.85482
1.23849 1.03039 0.85364 0.90553 0.80137 1.21378 0.76810 0.81825
0.91494 1.90709 1.53093 1.37364 1.65638 1.48743 1.68811 1.07387
1.08941 1.22824 1.02128 0.81022 0.96527 1.23291 0.99906 1.01006
0.93384 1.19836 0.82022 0.87167 0.93146 1.86083 1.36089 1.25233
1.90061 1.21502 0.94859 1.50439 0.91651 0.93156 1.25810 1.01388
0.92932 0.97020 1.70066 1.36464 1.47320 1.03066 0.85050 0.79873
0.79593 0.73035 1.18876 1.26873 1.20320 1.22323 0.98966 0.98127
0.81165 1.23140 0.87634 0.97542 1.08353 1.21543 0.94968 0.96826
0.96294 1.21373 0.93460 0.99060 1.00554 0.89471 0.90058 0.90821
0.83896 0.86566 0.88228 0.86780 0.86982 0.91098 0.76001 0.92386
0.93451 0.94235 0.81509 0.85982 0.82621 0.82414
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.87 10.00 71.23 0.71 -0.15 16
2 C -0.07 -0.87 5.89 -19.81 -0.12 -0.99 16
3 C -0.13 -2.18 9.68 22.23 0.22 -1.96 16
4 C -0.09 -2.04 9.69 22.53 0.22 -1.82 16
5 C -0.08 -1.60 5.87 -20.13 -0.12 -1.72 16
6 C 0.13 3.27 7.16 45.77 0.33 3.59 16
7 N -0.32 -10.62 12.12 -42.23 -0.51 -11.13 16
8 O -0.20 -6.69 11.82 -20.30 -0.24 -6.93 16
9 C 0.03 0.86 3.47 30.45 0.11 0.96 16
10 H 0.18 2.94 7.56 -2.39 -0.02 2.92 16
11 C 0.50 18.17 7.17 87.66 0.63 18.80 16
12 O -0.59 -28.82 16.92 14.99 0.25 -28.57 16
13 N -0.60 -20.71 3.33 -811.77 -2.70 -23.41 16
14 C 0.10 2.13 5.96 86.86 0.52 2.64 16
15 C -0.14 -3.95 6.24 31.99 0.20 -3.75 16
16 C 0.22 8.88 0.68 -10.35 -0.01 8.88 16
17 O -0.56 -21.15 8.88 -148.98 -1.32 -22.48 16
18 C -0.55 -28.47 8.71 25.60 0.22 -28.25 16
19 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16
20 C 0.03 1.62 5.46 84.65 0.46 2.09 16
21 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16
22 Si 0.99 48.19 24.90 68.60 1.71 49.89 16
23 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16
24 H -0.34 -17.15 7.11 99.48 0.71 -16.45 16
25 H -0.28 -13.78 5.18 99.48 0.52 -13.27 16
26 C 0.12 5.19 5.64 86.73 0.49 5.68 16
27 C -0.13 -2.22 5.48 30.77 0.17 -2.05 16
28 C -0.08 -1.13 9.61 22.53 0.22 -0.92 16
29 C -0.13 -1.56 9.68 22.23 0.22 -1.35 16
30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16
31 H 0.08 0.44 8.08 -2.39 -0.02 0.43 16
32 H 0.07 0.50 8.08 -2.39 -0.02 0.48 16
33 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16
34 H 0.12 2.79 7.84 -2.91 -0.02 2.77 16
35 H 0.10 1.70 7.75 -2.38 -0.02 1.68 16
36 H 0.11 1.56 7.29 -2.39 -0.02 1.54 16
37 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16
38 H 0.07 2.19 7.99 -2.39 -0.02 2.18 16
39 H 0.39 11.86 9.07 -74.06 -0.67 11.18 16
40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16
41 H 0.05 2.38 7.82 -2.38 -0.02 2.36 16
42 H 0.04 1.95 6.30 -2.39 -0.02 1.93 16
43 H 0.17 1.29 8.14 -2.39 -0.02 1.27 16
44 H 0.12 1.88 6.87 -2.39 -0.02 1.86 16
45 H 0.16 1.41 7.38 -2.91 -0.02 1.39 16
46 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16
Total: -1.00 -86.41 376.54 2.10 -84.31
By element:
Atomic # 1 Polarization: 14.28 SS G_CDS: 0.15 Total: 14.43 kcal
Atomic # 6 Polarization: -4.78 SS G_CDS: 4.46 Total: -0.32 kcal
Atomic # 7 Polarization: -87.43 SS G_CDS: -2.91 Total: -90.34 kcal
Atomic # 8 Polarization: -56.67 SS G_CDS: -1.31 Total: -57.98 kcal
Atomic # 14 Polarization: 48.19 SS G_CDS: 1.71 Total: 49.89 kcal
Total: -86.41 2.10 -84.31 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000911526732.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.321 kcal
(2) G-P(sol) polarization free energy of solvation -86.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.085 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.989 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds