Wall clock time and date at job start Sat Apr 11 2020 07:06:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53003 * 109.46918 * 2 1
4 4 C 1.53001 * 109.46964 * 179.97438 * 3 2 1
5 5 H 1.08998 * 109.46987 * 55.00461 * 4 3 2
6 6 C 1.47204 * 109.46759 * 174.99936 * 4 3 2
7 7 N 4.86390 * 126.73441 * 356.84958 * 2 1 3
8 8 N 1.46500 * 109.47084 * 294.99912 * 4 3 2
9 9 C 1.34783 * 119.99568 * 155.00147 * 8 4 3
10 10 O 1.21723 * 120.00069 * 0.02562 * 9 8 4
11 11 C 1.46249 * 119.99691 * 180.02562 * 9 8 4
12 12 C 1.35026 * 119.99749 * 173.09822 * 11 9 8
13 13 C 1.46964 * 120.00069 * 346.79553 * 12 11 9
14 14 C 1.40034 * 120.07622 * 315.34813 * 13 12 11
15 15 C 1.37648 * 119.99468 * 179.97438 * 14 13 12
16 16 C 1.39060 * 120.16396 * 0.27257 * 15 14 13
17 17 O 1.35617 * 119.91812 * 179.70435 * 16 15 14
18 18 C 1.34758 * 117.00265 * 7.32021 * 17 16 15
19 19 H 1.08004 * 119.99679 * 6.21118 * 18 17 16
20 20 C 1.38705 * 119.99970 * 186.21778 * 18 17 16
21 21 N 1.31516 * 120.00125 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 119.99957 * 180.02562 * 20 18 17
23 23 H 1.48502 * 109.47538 * 89.99541 * 22 20 18
24 24 H 1.48499 * 109.46994 * 209.99662 * 22 20 18
25 25 H 1.48504 * 109.47169 * 329.99265 * 22 20 18
26 26 C 1.39613 * 120.15558 * 359.45082 * 16 15 14
27 27 O 1.35953 * 120.00000 * 180.30009 * 26 16 15
28 28 C 1.42910 * 117.00344 * 180.25393 * 27 26 16
29 29 C 1.38078 * 120.00293 * 0.55037 * 26 16 15
30 30 H 1.09001 * 109.47475 * 299.99849 * 1 2 3
31 31 H 1.09001 * 109.47541 * 60.00370 * 1 2 3
32 32 H 1.09005 * 109.46851 * 179.97438 * 1 2 3
33 33 H 1.08995 * 109.47084 * 240.00008 * 2 1 3
34 34 H 1.09002 * 109.47023 * 119.99540 * 2 1 3
35 35 H 1.09001 * 109.46924 * 59.99813 * 3 2 1
36 36 H 1.08993 * 109.47005 * 300.00223 * 3 2 1
37 37 H 0.96993 * 120.00084 * 335.00198 * 8 4 3
38 38 H 1.08002 * 120.00233 * 353.08292 * 11 9 8
39 39 H 1.07999 * 120.00080 * 166.80815 * 12 11 9
40 40 H 1.07999 * 120.00139 * 359.97438 * 14 13 12
41 41 H 1.08005 * 119.91369 * 180.02562 * 15 14 13
42 42 H 0.96997 * 119.99766 * 180.02562 * 21 20 18
43 43 H 1.09000 * 109.46604 * 299.99736 * 28 27 26
44 44 H 1.09004 * 109.46749 * 59.99471 * 28 27 26
45 45 H 1.08991 * 109.47374 * 179.97438 * 28 27 26
46 46 H 1.07993 * 120.08309 * 179.70346 * 29 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4426 0.0006
5 1 3.9336 0.8531 -0.8410
6 6 4.0606 2.8251 -0.1203
7 7 4.4391 3.8921 -0.2142
8 7 4.0577 0.8590 1.2528
9 6 5.2798 0.2925 1.3011
10 8 5.9782 0.2662 0.3045
11 6 5.7665 -0.2905 2.5509
12 6 6.9276 -0.9797 2.5671
13 6 7.5535 -1.3948 1.3039
14 6 6.7737 -1.9574 0.2859
15 6 7.3616 -2.3451 -0.8968
16 6 8.7304 -2.1849 -1.0821
17 8 9.3054 -2.5741 -2.2470
18 6 8.4787 -2.9655 -3.2366
19 1 7.4098 -2.8651 -3.1186
20 6 9.0004 -3.4973 -4.4066
21 7 10.3020 -3.6191 -4.5504
22 14 7.8544 -4.0391 -5.7787
23 1 7.6103 -2.8994 -6.6989
24 1 8.4771 -5.1580 -6.5307
25 1 6.5648 -4.4908 -5.1971
26 6 9.5132 -1.6194 -0.0738
27 8 10.8502 -1.4586 -0.2607
28 6 11.5907 -0.8784 0.8151
29 6 8.9305 -1.2281 1.1153
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8933 -0.5138 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 1.6765 1.9563 0.8900
36 1 1.6766 1.9563 -0.8899
37 1 3.5013 0.8804 2.0469
38 1 5.1975 -0.1696 3.4608
39 1 7.3962 -1.2260 3.5085
40 1 5.7111 -2.0871 0.4288
41 1 6.7588 -2.7785 -1.6812
42 1 10.6668 -3.9906 -5.3688
43 1 11.2027 0.1179 1.0273
44 1 11.4920 -1.5035 1.7026
45 1 12.6419 -0.8075 0.5360
46 1 9.5355 -0.7950 1.8979
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000491401428.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:57
Heat of formation + Delta-G solvation = -22.756710 kcal
Electronic energy + Delta-G solvation = -29546.124343 eV
Core-core repulsion = 25403.195053 eV
Total energy + Delta-G solvation = -4142.929290 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.13512 -39.36717 -37.57970 -37.45565 -36.08974 -35.61857 -33.60281 -32.98962
-32.12557 -29.97614 -29.45327 -28.36068 -26.43184 -25.41177 -25.00497 -23.29815
-21.53365 -21.49453 -21.23224 -19.47763 -18.18558 -18.00242 -17.76959 -16.83194
-16.36244 -15.99322 -15.27676 -15.14069 -15.05026 -14.68012 -14.50300 -14.25749
-14.07828 -13.77215 -13.67212 -13.40592 -13.31540 -13.28864 -13.15631 -12.82223
-12.67697 -12.56986 -12.23748 -12.01751 -11.66867 -11.46968 -11.44681 -11.36592
-11.32334 -11.08839 -11.03366 -10.85130 -10.64178 -10.48763 -10.33719 -9.64951
-9.45046 -9.37171 -9.16227 -8.69117 -7.75418 -6.67801 -6.43764 -3.95962
1.12786 2.31188 2.35841 2.60663 2.64742 3.14611 3.15628 3.19976
3.35513 3.41870 3.82679 3.97472 4.11058 4.41850 4.56599 4.60701
4.70693 4.94203 5.05197 5.10102 5.12931 5.14767 5.18877 5.32969
5.42195 5.49052 5.52361 5.57328 5.62645 5.73402 5.74997 5.81491
5.82094 5.91086 5.97077 6.18055 6.20564 6.29078 6.43555 6.52921
6.69566 7.02062 7.14325 7.27260 7.38966 7.41368 7.47212 7.69884
7.97969 8.26774 8.35577 9.00520 9.73240 10.73361
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.008291 B = 0.003476 C = 0.002760
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3376.536849 B = 8052.769936 C =10143.292669
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.124 4.124
3 C -0.120 4.120
4 C 0.244 3.756
5 H 0.132 0.868
6 C 0.196 3.804
7 N -0.424 5.424
8 N -0.727 5.727
9 C 0.541 3.459
10 O -0.501 6.501
11 C -0.265 4.265
12 C 0.031 3.969
13 C -0.158 4.158
14 C -0.017 4.017
15 C -0.220 4.220
16 C 0.151 3.849
17 O -0.157 6.157
18 C -0.387 4.387
19 H 0.093 0.907
20 C 0.040 3.960
21 N -0.853 5.853
22 Si 0.941 3.059
23 H -0.273 1.273
24 H -0.277 1.277
25 H -0.266 1.266
26 C 0.042 3.958
27 O -0.305 6.305
28 C 0.032 3.968
29 C -0.136 4.136
30 H 0.053 0.947
31 H 0.055 0.945
32 H 0.057 0.943
33 H 0.071 0.929
34 H 0.070 0.930
35 H 0.076 0.924
36 H 0.087 0.913
37 H 0.403 0.597
38 H 0.124 0.876
39 H 0.123 0.877
40 H 0.101 0.899
41 H 0.132 0.868
42 H 0.271 0.729
43 H 0.044 0.956
44 H 0.044 0.956
45 H 0.089 0.911
46 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.211 4.770 14.686 22.388
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.162 4.162
3 C -0.159 4.159
4 C 0.135 3.865
5 H 0.150 0.850
6 C -0.124 4.124
7 N -0.100 5.100
8 N -0.382 5.382
9 C 0.332 3.668
10 O -0.375 6.375
11 C -0.286 4.286
12 C 0.011 3.989
13 C -0.159 4.159
14 C -0.035 4.035
15 C -0.239 4.239
16 C 0.096 3.904
17 O -0.059 6.059
18 C -0.463 4.463
19 H 0.111 0.889
20 C -0.166 4.166
21 N -0.487 5.487
22 Si 0.766 3.234
23 H -0.198 1.198
24 H -0.202 1.202
25 H -0.191 1.191
26 C -0.003 4.003
27 O -0.219 6.219
28 C -0.063 4.063
29 C -0.155 4.155
30 H 0.073 0.927
31 H 0.074 0.926
32 H 0.076 0.924
33 H 0.090 0.910
34 H 0.089 0.911
35 H 0.095 0.905
36 H 0.105 0.895
37 H 0.238 0.762
38 H 0.142 0.858
39 H 0.141 0.859
40 H 0.119 0.881
41 H 0.149 0.851
42 H 0.081 0.919
43 H 0.062 0.938
44 H 0.063 0.937
45 H 0.108 0.892
46 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -14.573 6.177 13.352 20.708
hybrid contribution -1.014 -0.350 0.132 1.081
sum -15.587 5.827 13.484 21.418
Atomic orbital electron populations
1.21766 0.95420 1.02000 1.01830 1.21528 0.96032 0.95176 1.03458
1.21884 0.90713 0.99124 1.04214 1.18321 0.94352 0.82720 0.91100
0.85032 1.29859 0.93561 0.95266 0.93740 1.81163 1.08176 1.13245
1.07421 1.46005 1.18901 1.60999 1.12321 1.18623 0.80466 0.78154
0.89602 1.91047 1.54408 1.56263 1.35795 1.22527 1.01135 1.08040
0.96866 1.22328 0.91549 0.88011 0.96991 1.18032 0.92598 1.09977
0.95271 1.20505 0.96890 0.94587 0.91534 1.20734 0.93773 1.10054
0.99387 1.18843 0.90670 0.94434 0.86469 1.84011 1.34814 1.69976
1.17120 1.21418 0.90227 1.41800 0.92866 0.88925 1.25336 0.96671
0.96459 0.98117 1.70050 1.10874 1.40773 1.26965 0.85710 0.79246
0.78565 0.79913 1.19811 1.20226 1.19071 1.17953 0.82838 1.05163
0.94348 1.86224 1.16952 1.78624 1.40118 1.22856 0.96240 0.96978
0.90274 1.20671 0.94541 1.04248 0.96046 0.92744 0.92630 0.92412
0.90994 0.91111 0.90516 0.89492 0.76185 0.85806 0.85920 0.88075
0.85054 0.91927 0.93750 0.93704 0.89223 0.86558
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.73 9.91 37.16 0.37 -0.37 16
2 C -0.12 -0.67 5.82 -26.73 -0.16 -0.83 16
3 C -0.12 -0.67 4.71 -26.73 -0.13 -0.80 16
4 C 0.24 2.21 2.41 -70.72 -0.17 2.04 16
5 H 0.13 1.37 7.58 -51.93 -0.39 0.98 16
6 C 0.20 2.46 14.93 -20.76 -0.31 2.15 16
7 N -0.42 -6.55 18.54 42.15 0.78 -5.77 16
8 N -0.73 -6.40 4.49 -58.00 -0.26 -6.66 16
9 C 0.54 7.02 6.75 -13.04 -0.09 6.93 16
10 O -0.50 -9.03 12.15 5.17 0.06 -8.96 16
11 C -0.26 -2.92 9.88 -37.51 -0.37 -3.30 16
12 C 0.03 0.40 9.79 -37.19 -0.36 0.03 16
13 C -0.16 -2.78 4.43 -105.04 -0.47 -3.25 16
14 C -0.02 -0.31 6.74 -39.12 -0.26 -0.58 16
15 C -0.22 -4.96 9.09 -39.49 -0.36 -5.31 16
16 C 0.15 3.88 6.67 -38.76 -0.26 3.62 16
17 O -0.16 -4.69 9.52 -13.95 -0.13 -4.82 16
18 C -0.39 -11.04 9.41 30.91 0.29 -10.75 16
19 H 0.09 2.43 5.33 -52.48 -0.28 2.15 16
20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16
21 N -0.85 -25.45 13.67 55.48 0.76 -24.69 16
22 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16
23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
26 C 0.04 0.96 6.70 -39.13 -0.26 0.70 16
27 O -0.30 -6.96 10.28 -34.20 -0.35 -7.31 16
28 C 0.03 0.52 9.81 101.05 0.99 1.51 16
29 C -0.14 -2.58 8.77 -38.99 -0.34 -2.93 16
30 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16
31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16
32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.07 0.37 7.75 -51.93 -0.40 -0.04 16
35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16
36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
37 H 0.40 2.16 8.58 -40.82 -0.35 1.81 16
38 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16
39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16
40 H 0.10 1.68 7.23 -52.49 -0.38 1.30 16
41 H 0.13 2.93 5.74 -52.48 -0.30 2.62 16
42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16
43 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16
44 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16
45 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16
46 H 0.12 1.85 6.28 -52.49 -0.33 1.52 16
LS Contribution 396.07 15.07 5.97 5.97
Total: -1.00 -37.16 396.07 -6.35 -43.51
By element:
Atomic # 1 Polarization: 9.42 SS G_CDS: -6.17 Total: 3.25 kcal
Atomic # 6 Polarization: -8.14 SS G_CDS: -1.98 Total: -10.12 kcal
Atomic # 7 Polarization: -38.40 SS G_CDS: 1.28 Total: -37.12 kcal
Atomic # 8 Polarization: -20.68 SS G_CDS: -0.42 Total: -21.10 kcal
Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -37.16 -6.35 -43.51 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000491401428.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.748 kcal
(2) G-P(sol) polarization free energy of solvation -37.156 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.408 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.757 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds