Wall clock time and date at job start Sat Apr 11 2020 07:06:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53003 * 109.46918 * 2 1
4 4 C 1.53001 * 109.46964 * 179.97438 * 3 2 1
5 5 H 1.08998 * 109.46987 * 55.00461 * 4 3 2
6 6 C 1.47204 * 109.46759 * 174.99936 * 4 3 2
7 7 N 4.86390 * 126.73441 * 356.84958 * 2 1 3
8 8 N 1.46500 * 109.47084 * 294.99912 * 4 3 2
9 9 C 1.34783 * 119.99568 * 155.00147 * 8 4 3
10 10 O 1.21723 * 120.00069 * 0.02562 * 9 8 4
11 11 C 1.46249 * 119.99691 * 180.02562 * 9 8 4
12 12 C 1.35026 * 119.99749 * 173.09822 * 11 9 8
13 13 C 1.46964 * 120.00069 * 346.79553 * 12 11 9
14 14 C 1.40034 * 120.07622 * 315.34813 * 13 12 11
15 15 C 1.37648 * 119.99468 * 179.97438 * 14 13 12
16 16 C 1.39060 * 120.16396 * 0.27257 * 15 14 13
17 17 O 1.35617 * 119.91812 * 179.70435 * 16 15 14
18 18 C 1.34758 * 117.00265 * 7.32021 * 17 16 15
19 19 H 1.08004 * 119.99679 * 6.21118 * 18 17 16
20 20 C 1.38705 * 119.99970 * 186.21778 * 18 17 16
21 21 N 1.31516 * 120.00125 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 119.99957 * 180.02562 * 20 18 17
23 23 H 1.48502 * 109.47538 * 89.99541 * 22 20 18
24 24 H 1.48499 * 109.46994 * 209.99662 * 22 20 18
25 25 H 1.48504 * 109.47169 * 329.99265 * 22 20 18
26 26 C 1.39613 * 120.15558 * 359.45082 * 16 15 14
27 27 O 1.35953 * 120.00000 * 180.30009 * 26 16 15
28 28 C 1.42910 * 117.00344 * 180.25393 * 27 26 16
29 29 C 1.38078 * 120.00293 * 0.55037 * 26 16 15
30 30 H 1.09001 * 109.47475 * 299.99849 * 1 2 3
31 31 H 1.09001 * 109.47541 * 60.00370 * 1 2 3
32 32 H 1.09005 * 109.46851 * 179.97438 * 1 2 3
33 33 H 1.08995 * 109.47084 * 240.00008 * 2 1 3
34 34 H 1.09002 * 109.47023 * 119.99540 * 2 1 3
35 35 H 1.09001 * 109.46924 * 59.99813 * 3 2 1
36 36 H 1.08993 * 109.47005 * 300.00223 * 3 2 1
37 37 H 0.96993 * 120.00084 * 335.00198 * 8 4 3
38 38 H 1.08002 * 120.00233 * 353.08292 * 11 9 8
39 39 H 1.07999 * 120.00080 * 166.80815 * 12 11 9
40 40 H 1.07999 * 120.00139 * 359.97438 * 14 13 12
41 41 H 1.08005 * 119.91369 * 180.02562 * 15 14 13
42 42 H 0.96997 * 119.99766 * 180.02562 * 21 20 18
43 43 H 1.09000 * 109.46604 * 299.99736 * 28 27 26
44 44 H 1.09004 * 109.46749 * 59.99471 * 28 27 26
45 45 H 1.08991 * 109.47374 * 179.97438 * 28 27 26
46 46 H 1.07993 * 120.08309 * 179.70346 * 29 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4426 0.0006
5 1 3.9336 0.8531 -0.8410
6 6 4.0606 2.8251 -0.1203
7 7 4.4391 3.8921 -0.2142
8 7 4.0577 0.8590 1.2528
9 6 5.2798 0.2925 1.3011
10 8 5.9782 0.2662 0.3045
11 6 5.7665 -0.2905 2.5509
12 6 6.9276 -0.9797 2.5671
13 6 7.5535 -1.3948 1.3039
14 6 6.7737 -1.9574 0.2859
15 6 7.3616 -2.3451 -0.8968
16 6 8.7304 -2.1849 -1.0821
17 8 9.3054 -2.5741 -2.2470
18 6 8.4787 -2.9655 -3.2366
19 1 7.4098 -2.8651 -3.1186
20 6 9.0004 -3.4973 -4.4066
21 7 10.3020 -3.6191 -4.5504
22 14 7.8544 -4.0391 -5.7787
23 1 7.6103 -2.8994 -6.6989
24 1 8.4771 -5.1580 -6.5307
25 1 6.5648 -4.4908 -5.1971
26 6 9.5132 -1.6194 -0.0738
27 8 10.8502 -1.4586 -0.2607
28 6 11.5907 -0.8784 0.8151
29 6 8.9305 -1.2281 1.1153
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8933 -0.5138 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 1.6765 1.9563 0.8900
36 1 1.6766 1.9563 -0.8899
37 1 3.5013 0.8804 2.0469
38 1 5.1975 -0.1696 3.4608
39 1 7.3962 -1.2260 3.5085
40 1 5.7111 -2.0871 0.4288
41 1 6.7588 -2.7785 -1.6812
42 1 10.6668 -3.9906 -5.3688
43 1 11.2027 0.1179 1.0273
44 1 11.4920 -1.5035 1.7026
45 1 12.6419 -0.8075 0.5360
46 1 9.5355 -0.7950 1.8979
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000491401428.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:56
Heat of formation + Delta-G solvation = -49.009863 kcal
Electronic energy + Delta-G solvation = -29547.262765 eV
Core-core repulsion = 25403.195053 eV
Total energy + Delta-G solvation = -4144.067712 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.39009 -40.80255 -39.21159 -38.62421 -37.54317 -36.55388 -34.51823 -34.37673
-33.80622 -31.11497 -30.81511 -29.69061 -27.80395 -27.28587 -25.76951 -24.46119
-23.16581 -22.61488 -22.00093 -20.57941 -19.85471 -19.38149 -19.02300 -18.10243
-17.66320 -17.16781 -16.82741 -16.60483 -16.32319 -15.77621 -15.61974 -15.52879
-15.21499 -15.17801 -15.09356 -14.96901 -14.61883 -14.22346 -14.08278 -13.91668
-13.86103 -13.69827 -13.44182 -13.13348 -13.04517 -12.79807 -12.75317 -12.59040
-12.45697 -12.15449 -12.03764 -11.98373 -11.83500 -11.80312 -11.45137 -11.36710
-10.87365 -10.71996 -10.34821 -10.23807 -9.34626 -8.44091 -8.35105 -6.08008
-0.02943 0.68238 1.09556 1.33854 1.39211 1.45702 1.52585 1.65253
2.19168 2.36272 2.48548 2.63332 2.87306 2.94833 3.21197 3.47919
3.77558 3.92396 4.02648 4.10959 4.16981 4.28093 4.30251 4.34196
4.42221 4.47382 4.61708 4.66479 4.70174 4.70648 4.79208 4.84756
4.98203 5.03990 5.08346 5.12358 5.17670 5.32385 5.38170 5.39925
5.46595 5.55928 5.58736 5.62743 5.83728 5.99308 6.11413 6.41067
6.64893 6.70087 6.99696 7.38997 7.85049 8.79611
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.008291 B = 0.003476 C = 0.002760
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3376.536849 B = 8052.769936 C =10143.292669
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.122 4.122
3 C -0.109 4.109
4 C 0.245 3.755
5 H 0.118 0.882
6 C 0.217 3.783
7 N -0.478 5.478
8 N -0.702 5.702
9 C 0.529 3.471
10 O -0.558 6.558
11 C -0.220 4.220
12 C 0.001 3.999
13 C -0.119 4.119
14 C -0.025 4.025
15 C -0.220 4.220
16 C 0.092 3.908
17 O -0.222 6.222
18 C -0.412 4.412
19 H 0.099 0.901
20 C -0.025 4.025
21 N -0.920 5.920
22 Si 1.019 2.981
23 H -0.266 1.266
24 H -0.269 1.269
25 H -0.248 1.248
26 C 0.025 3.975
27 O -0.349 6.349
28 C 0.023 3.977
29 C -0.140 4.140
30 H 0.065 0.935
31 H 0.053 0.947
32 H 0.055 0.945
33 H 0.058 0.942
34 H 0.079 0.921
35 H 0.100 0.900
36 H 0.091 0.909
37 H 0.426 0.574
38 H 0.182 0.818
39 H 0.170 0.830
40 H 0.129 0.871
41 H 0.120 0.880
42 H 0.272 0.728
43 H 0.059 0.941
44 H 0.069 0.931
45 H 0.107 0.893
46 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.074 5.757 19.235 28.391
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.160 4.160
3 C -0.148 4.148
4 C 0.136 3.864
5 H 0.136 0.864
6 C -0.103 4.103
7 N -0.156 5.156
8 N -0.358 5.358
9 C 0.320 3.680
10 O -0.437 6.437
11 C -0.240 4.240
12 C -0.018 4.018
13 C -0.120 4.120
14 C -0.043 4.043
15 C -0.239 4.239
16 C 0.042 3.958
17 O -0.129 6.129
18 C -0.488 4.488
19 H 0.116 0.884
20 C -0.222 4.222
21 N -0.558 5.558
22 Si 0.838 3.162
23 H -0.191 1.191
24 H -0.193 1.193
25 H -0.172 1.172
26 C -0.020 4.020
27 O -0.265 6.265
28 C -0.071 4.071
29 C -0.158 4.158
30 H 0.084 0.916
31 H 0.072 0.928
32 H 0.074 0.926
33 H 0.076 0.924
34 H 0.097 0.903
35 H 0.118 0.882
36 H 0.109 0.891
37 H 0.265 0.735
38 H 0.199 0.801
39 H 0.187 0.813
40 H 0.146 0.854
41 H 0.138 0.862
42 H 0.081 0.919
43 H 0.077 0.923
44 H 0.088 0.912
45 H 0.125 0.875
46 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -18.522 7.203 18.020 26.826
hybrid contribution -0.067 -0.350 -0.732 0.814
sum -18.589 6.853 17.288 26.294
Atomic orbital electron populations
1.21755 0.94764 1.02074 1.02344 1.21512 0.96522 0.94718 1.03235
1.21882 0.87524 0.99741 1.05660 1.18560 0.96563 0.80513 0.90793
0.86439 1.30489 0.92078 0.95554 0.92161 1.81186 1.10038 1.15188
1.09141 1.45787 1.17881 1.58970 1.13164 1.19233 0.81018 0.78052
0.89689 1.91069 1.56312 1.58356 1.37945 1.23074 0.99278 1.04062
0.97625 1.22573 0.92563 0.90646 0.96007 1.18712 0.92021 1.04814
0.96453 1.20770 0.98312 0.94534 0.90698 1.20867 0.92782 1.09606
1.00686 1.19503 0.92498 0.96912 0.86907 1.83968 1.36010 1.74023
1.18913 1.21846 0.90666 1.42383 0.93879 0.88382 1.26645 0.98537
0.96340 1.00681 1.70210 1.13325 1.44124 1.28151 0.84593 0.77336
0.78279 0.75994 1.19083 1.19323 1.17173 1.18370 0.83264 1.05210
0.95117 1.86163 1.17383 1.79453 1.43472 1.23219 0.96467 0.97780
0.89681 1.21151 0.95771 1.03568 0.95333 0.91571 0.92827 0.92607
0.92359 0.90280 0.88188 0.89053 0.73453 0.80056 0.81272 0.85356
0.86189 0.91915 0.92283 0.91211 0.87517 0.82781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.98 9.91 71.98 0.71 -0.27 16
2 C -0.12 -0.91 5.82 30.59 0.18 -0.73 16
3 C -0.11 -0.83 4.71 30.60 0.14 -0.69 16
4 C 0.25 3.78 2.41 43.19 0.10 3.88 16
5 H 0.12 2.30 7.58 -2.39 -0.02 2.28 16
6 C 0.22 5.07 14.93 89.44 1.34 6.41 16
7 N -0.48 -14.41 18.54 20.01 0.37 -14.04 16
8 N -0.70 -9.10 4.49 -455.60 -2.05 -11.15 16
9 C 0.53 11.37 6.75 86.32 0.58 11.95 16
10 O -0.56 -18.99 12.15 -4.42 -0.05 -19.04 16
11 C -0.22 -3.31 9.88 23.61 0.23 -3.08 16
12 C 0.00 0.03 9.79 23.82 0.23 0.26 16
13 C -0.12 -3.86 4.43 -20.13 -0.09 -3.95 16
14 C -0.02 -0.92 6.74 22.57 0.15 -0.77 16
15 C -0.22 -10.43 9.09 22.33 0.20 -10.22 16
16 C 0.09 5.10 6.67 22.80 0.15 5.25 16
17 O -0.22 -14.62 9.52 -6.58 -0.06 -14.69 16
18 C -0.41 -25.61 9.41 67.93 0.64 -24.97 16
19 H 0.10 5.62 5.33 -2.91 -0.02 5.60 16
20 C -0.02 -1.49 5.49 84.85 0.47 -1.02 16
21 N -0.92 -59.66 13.67 21.62 0.30 -59.37 16
22 Si 1.02 44.90 29.55 68.60 2.03 46.92 16
23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16
24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
25 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16
26 C 0.02 1.20 6.70 22.56 0.15 1.35 16
27 O -0.35 -16.79 10.28 -79.05 -0.81 -17.60 16
28 C 0.02 0.72 9.81 113.37 1.11 1.83 16
29 C -0.14 -5.09 8.77 22.65 0.20 -4.89 16
30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16
31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16
32 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16
33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16
34 H 0.08 0.46 7.75 -2.39 -0.02 0.44 16
35 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16
36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16
37 H 0.43 1.84 8.58 -92.71 -0.80 1.05 16
38 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16
39 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16
40 H 0.13 3.95 7.23 -2.91 -0.02 3.93 16
41 H 0.12 5.76 5.74 -2.91 -0.02 5.74 16
42 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16
43 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16
44 H 0.07 1.79 7.66 -2.39 -0.02 1.77 16
45 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16
46 H 0.15 4.33 6.28 -2.91 -0.02 4.31 16
Total: -1.00 -95.16 396.07 6.46 -88.71
By element:
Atomic # 1 Polarization: 19.69 SS G_CDS: 0.23 Total: 19.91 kcal
Atomic # 6 Polarization: -26.17 SS G_CDS: 6.51 Total: -19.66 kcal
Atomic # 7 Polarization: -83.17 SS G_CDS: -1.38 Total: -84.55 kcal
Atomic # 8 Polarization: -50.40 SS G_CDS: -0.93 Total: -51.33 kcal
Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal
Total: -95.16 6.46 -88.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000491401428.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.698 kcal
(2) G-P(sol) polarization free energy of solvation -95.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.466 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.708 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.010 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds