Wall clock time and date at job start Sat Apr 11 2020 07:07:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45200 * 1
3 3 C 1.34229 * 116.99747 * 2 1
4 4 O 1.20820 * 120.00426 * 0.02562 * 3 2 1
5 5 C 1.50706 * 119.99759 * 180.02562 * 3 2 1
6 6 N 1.46500 * 109.47053 * 180.02562 * 5 3 2
7 7 C 1.34776 * 119.99657 * 90.00458 * 6 5 3
8 8 O 1.21666 * 120.00548 * 9.42831 * 7 6 5
9 9 C 1.46891 * 119.99751 * 189.43355 * 7 6 5
10 10 C 1.36127 * 125.43682 * 26.64992 * 9 7 6
11 11 C 1.41699 * 107.74883 * 180.24474 * 10 9 7
12 12 C 1.40014 * 133.35319 * 179.81758 * 11 10 9
13 13 C 1.36581 * 119.83556 * 179.97438 * 12 11 10
14 14 C 1.38860 * 120.59368 * 0.02562 * 13 12 11
15 15 C 1.37842 * 120.63767 * 359.97308 * 14 13 12
16 16 C 1.39082 * 119.81070 * 0.02562 * 15 14 13
17 17 N 1.37843 * 133.16204 * 180.02562 * 16 15 14
18 18 C 1.36891 * 125.61703 * 359.93875 * 17 16 15
19 19 H 1.08001 * 119.99604 * 228.31365 * 18 17 16
20 20 C 1.39010 * 120.00127 * 48.31753 * 18 17 16
21 21 N 1.31344 * 120.00139 * 187.75386 * 20 18 17
22 22 Si 1.86803 * 120.00079 * 7.47830 * 20 18 17
23 23 H 1.48493 * 109.47145 * 264.41591 * 22 20 18
24 24 H 1.48509 * 109.46878 * 24.41634 * 22 20 18
25 25 H 1.48501 * 109.46952 * 144.41493 * 22 20 18
26 26 C 1.46501 * 120.00009 * 269.99949 * 6 5 3
27 27 C 1.52994 * 109.47037 * 311.42648 * 26 6 5
28 28 C 1.53001 * 109.46828 * 71.42413 * 26 6 5
29 29 H 1.09003 * 109.47298 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.46867 * 299.99068 * 1 2 3
31 31 H 1.08995 * 109.47432 * 59.99552 * 1 2 3
32 32 H 1.08996 * 109.46926 * 60.00631 * 5 3 2
33 33 H 1.08997 * 109.47506 * 300.00754 * 5 3 2
34 34 H 1.07995 * 126.12646 * 0.02562 * 10 9 7
35 35 H 1.08002 * 120.08326 * 359.95155 * 12 11 10
36 36 H 1.07991 * 119.70472 * 180.02562 * 13 12 11
37 37 H 1.07998 * 119.67810 * 179.97438 * 14 13 12
38 38 H 1.07993 * 120.09605 * 180.02562 * 15 14 13
39 39 H 0.97005 * 119.99665 * 359.72517 * 21 20 18
40 40 H 1.08999 * 109.46840 * 191.41968 * 26 6 5
41 41 H 1.08999 * 109.47861 * 59.99945 * 27 26 6
42 42 H 1.09004 * 109.46976 * 180.02562 * 27 26 6
43 43 H 1.09001 * 109.47250 * 299.99757 * 27 26 6
44 44 H 1.09002 * 109.47380 * 60.00119 * 28 26 6
45 45 H 1.09004 * 109.47185 * 179.97438 * 28 26 6
46 46 H 1.09002 * 109.47499 * 299.99652 * 28 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 7 3.9817 2.6798 0.0002
7 6 4.1733 3.3252 1.1677
8 8 4.1704 2.7040 2.2139
9 6 4.3856 4.7786 1.1772
10 6 3.9290 5.6491 0.2355
11 6 4.3505 6.9495 0.6088
12 6 4.1837 8.2157 0.0349
13 6 4.7202 9.3139 0.6443
14 6 5.4318 9.1873 1.8300
15 6 5.6093 7.9514 2.4141
16 6 5.0722 6.8185 1.8121
17 7 5.0795 5.4808 2.1445
18 6 5.6793 4.9369 3.2483
19 1 6.3146 4.0696 3.1453
20 6 5.4705 5.5007 4.5016
21 7 6.1613 5.0775 5.5355
22 14 4.2130 6.8657 4.7141
23 1 4.8949 8.1828 4.6405
24 1 3.1959 6.7739 3.6359
25 1 3.5486 6.7254 6.0347
26 6 4.1888 3.3830 -1.2682
27 6 5.0636 2.5289 -2.1880
28 6 2.8367 3.6340 -1.9389
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 3.9556 0.7811 -0.8909
33 1 3.9565 0.7805 0.8890
34 1 3.3522 5.3939 -0.6411
35 1 3.6324 8.3236 -0.8875
36 1 4.5899 10.2896 0.2001
37 1 5.8500 10.0656 2.2991
38 1 6.1639 7.8631 3.3366
39 1 6.8143 4.3688 5.4252
40 1 4.6829 4.3360 -1.0787
41 1 4.5695 1.5759 -2.3774
42 1 5.2181 3.0524 -3.1315
43 1 6.0268 2.3501 -1.7102
44 1 2.2135 4.2426 -1.2836
45 1 2.9908 4.1577 -2.8824
46 1 2.3426 2.6811 -2.1283
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000609216596.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:25
Heat of formation + Delta-G solvation = -35.261811 kcal
Electronic energy + Delta-G solvation = -31604.792650 eV
Core-core repulsion = 27461.321098 eV
Total energy + Delta-G solvation = -4143.471552 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.10923 -40.45462 -39.01596 -36.75986 -36.11794 -36.03677 -33.58828 -31.98719
-31.34061 -29.74220 -29.18256 -28.20256 -27.20499 -26.68242 -24.43777 -23.25225
-21.79149 -21.33307 -20.86573 -19.86670 -18.99548 -18.29606 -17.73804 -17.01071
-16.64268 -16.15111 -15.94739 -15.80259 -15.33357 -14.74328 -14.41082 -14.26496
-14.12903 -13.61235 -13.45139 -13.36404 -13.28273 -13.20452 -13.00620 -12.57002
-12.50689 -12.49211 -12.19361 -12.04060 -11.76788 -11.57790 -11.27019 -11.07193
-11.05868 -10.85798 -10.75445 -10.50058 -10.47258 -10.22906 -10.02780 -9.71257
-9.39134 -9.27839 -8.64208 -8.61664 -7.45010 -7.18432 -6.83742 -4.54205
1.56734 2.23552 2.42839 2.48605 2.85693 3.12991 3.21067 3.31692
3.52097 3.98765 4.06769 4.27678 4.62943 4.74128 4.81668 4.84662
4.91605 4.99760 5.05963 5.08577 5.24360 5.38615 5.40741 5.44333
5.57498 5.59084 5.67728 5.70415 5.79926 5.89671 5.97026 6.08306
6.09591 6.21822 6.30408 6.38737 6.45718 6.55218 6.65148 6.73153
6.81317 7.20248 7.31010 7.40595 7.52033 7.61331 7.71008 7.77744
7.88548 8.32507 8.50038 8.70517 9.16929 10.23958
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.012267 B = 0.004459 C = 0.003786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2281.932229 B = 6277.405174 C = 7393.648090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.364 6.364
3 C 0.438 3.562
4 O -0.487 6.487
5 C 0.125 3.875
6 N -0.593 5.593
7 C 0.597 3.403
8 O -0.513 6.513
9 C -0.008 4.008
10 C -0.206 4.206
11 C -0.120 4.120
12 C -0.079 4.079
13 C -0.157 4.157
14 C -0.130 4.130
15 C -0.108 4.108
16 C 0.057 3.943
17 N -0.252 5.252
18 C -0.404 4.404
19 H 0.102 0.898
20 C 0.044 3.956
21 N -0.844 5.844
22 Si 1.039 2.961
23 H -0.258 1.258
24 H -0.269 1.269
25 H -0.283 1.283
26 C 0.112 3.888
27 C -0.163 4.163
28 C -0.161 4.161
29 H 0.099 0.901
30 H 0.062 0.938
31 H 0.060 0.940
32 H 0.121 0.879
33 H 0.127 0.873
34 H 0.146 0.854
35 H 0.110 0.890
36 H 0.110 0.890
37 H 0.114 0.886
38 H 0.122 0.878
39 H 0.282 0.718
40 H 0.123 0.877
41 H 0.055 0.945
42 H 0.071 0.929
43 H 0.063 0.937
44 H 0.073 0.927
45 H 0.062 0.938
46 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.391 -4.616 -15.411 16.967
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.280 6.280
3 C 0.278 3.722
4 O -0.372 6.372
5 C 0.000 4.000
6 N -0.329 5.329
7 C 0.387 3.613
8 O -0.387 6.387
9 C -0.125 4.125
10 C -0.233 4.233
11 C -0.125 4.125
12 C -0.098 4.098
13 C -0.176 4.176
14 C -0.150 4.150
15 C -0.128 4.128
16 C -0.056 4.056
17 N 0.085 4.915
18 C -0.532 4.532
19 H 0.120 0.880
20 C -0.170 4.170
21 N -0.472 5.472
22 Si 0.864 3.136
23 H -0.184 1.184
24 H -0.193 1.193
25 H -0.209 1.209
26 C 0.009 3.991
27 C -0.221 4.221
28 C -0.219 4.219
29 H 0.117 0.883
30 H 0.081 0.919
31 H 0.079 0.921
32 H 0.139 0.861
33 H 0.144 0.856
34 H 0.163 0.837
35 H 0.128 0.872
36 H 0.128 0.872
37 H 0.132 0.868
38 H 0.140 0.860
39 H 0.093 0.907
40 H 0.141 0.859
41 H 0.074 0.926
42 H 0.090 0.910
43 H 0.082 0.918
44 H 0.092 0.908
45 H 0.081 0.919
46 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -6.077 -3.877 -13.327 15.152
hybrid contribution 0.376 -1.255 -1.006 1.652
sum -5.701 -5.132 -14.333 16.256
Atomic orbital electron populations
1.23215 0.76606 1.03366 1.02523 1.86491 1.23280 1.33723 1.84532
1.24639 0.93048 0.81581 0.72895 1.90695 1.66772 1.36094 1.43671
1.20780 0.86758 0.85457 1.07025 1.47453 1.68794 1.10033 1.06587
1.17313 0.75421 0.85954 0.82591 1.90821 1.49105 1.67722 1.31086
1.19735 1.04749 0.91404 0.96598 1.20916 1.09405 0.91034 1.01914
1.17973 1.04472 0.93556 0.96471 1.20145 0.99802 0.90917 0.98938
1.20366 1.02400 0.97637 0.97237 1.20580 1.01821 0.95779 0.96816
1.20283 1.01583 0.90631 1.00296 1.18462 1.04783 0.85722 0.96643
1.40264 1.32298 1.02973 1.15923 1.20834 1.30339 1.17417 0.84618
0.88019 1.26659 0.98943 1.01018 0.90336 1.70769 1.19867 1.25278
1.31253 0.84104 0.76693 0.75683 0.77097 1.18392 1.19331 1.20943
1.21783 0.96636 0.97996 0.82672 1.22186 1.00085 1.00027 0.99773
1.22269 0.96981 1.02101 1.00536 0.88302 0.91921 0.92083 0.86138
0.85571 0.83696 0.87212 0.87240 0.86818 0.86017 0.90685 0.85941
0.92593 0.91005 0.91840 0.90801 0.91860 0.93085
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.36 10.56 101.05 1.07 1.43 16
2 O -0.36 -4.56 10.57 -39.25 -0.41 -4.98 16
3 C 0.44 6.43 7.19 36.01 0.26 6.69 16
4 O -0.49 -8.54 13.86 -18.75 -0.26 -8.80 16
5 C 0.13 1.70 5.76 -5.19 -0.03 1.67 16
6 N -0.59 -9.78 1.98 -168.93 -0.33 -10.11 16
7 C 0.60 13.18 7.44 -12.76 -0.09 13.09 16
8 O -0.51 -13.16 15.52 5.22 0.08 -13.08 16
9 C -0.01 -0.18 6.21 -82.25 -0.51 -0.69 16
10 C -0.21 -4.24 8.36 -39.02 -0.33 -4.56 16
11 C -0.12 -2.57 6.16 -106.89 -0.66 -3.23 16
12 C -0.08 -1.43 10.06 -39.51 -0.40 -1.83 16
13 C -0.16 -2.70 9.97 -39.95 -0.40 -3.10 16
14 C -0.13 -2.43 10.02 -39.50 -0.40 -2.82 16
15 C -0.11 -2.42 6.77 -39.41 -0.27 -2.69 16
16 C 0.06 1.38 4.86 -83.83 -0.41 0.97 16
17 N -0.25 -6.56 2.39 -56.08 -0.13 -6.70 16
18 C -0.40 -11.40 8.91 -15.01 -0.13 -11.53 16
19 H 0.10 3.04 8.05 -52.49 -0.42 2.62 16
20 C 0.04 1.23 5.26 -17.47 -0.09 1.14 16
21 N -0.84 -24.27 13.69 55.50 0.76 -23.51 16
22 Si 1.04 26.05 24.11 -169.99 -4.10 21.95 16
23 H -0.26 -5.86 5.77 56.52 0.33 -5.54 16
24 H -0.27 -7.01 6.78 56.52 0.38 -6.63 16
25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16
26 C 0.11 1.50 2.46 -67.93 -0.17 1.33 16
27 C -0.16 -1.62 8.90 37.15 0.33 -1.29 16
28 C -0.16 -1.99 7.13 37.16 0.26 -1.72 16
29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16
31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16
32 H 0.12 1.15 5.91 -51.93 -0.31 0.84 16
33 H 0.13 1.79 7.31 -51.93 -0.38 1.41 16
34 H 0.15 2.51 4.00 -52.49 -0.21 2.30 16
35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16
36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16
37 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16
38 H 0.12 2.80 5.78 -52.49 -0.30 2.50 16
39 H 0.28 7.94 8.72 -40.82 -0.36 7.58 16
40 H 0.12 1.86 4.64 -51.93 -0.24 1.62 16
41 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16
42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
44 H 0.07 1.10 6.38 -51.93 -0.33 0.77 16
45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
46 H 0.05 0.62 6.64 -51.93 -0.34 0.27 16
LS Contribution 364.65 15.07 5.50 5.50
Total: -1.00 -33.92 364.65 -6.79 -40.71
By element:
Atomic # 1 Polarization: 12.10 SS G_CDS: -5.92 Total: 6.18 kcal
Atomic # 6 Polarization: -5.20 SS G_CDS: -1.96 Total: -7.16 kcal
Atomic # 7 Polarization: -40.61 SS G_CDS: 0.29 Total: -40.32 kcal
Atomic # 8 Polarization: -26.26 SS G_CDS: -0.59 Total: -26.85 kcal
Atomic # 14 Polarization: 26.05 SS G_CDS: -4.10 Total: 21.95 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -33.92 -6.79 -40.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609216596.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.450 kcal
(2) G-P(sol) polarization free energy of solvation -33.922 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.473 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.262 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds