Wall clock time and date at job start Sat Apr 11 2020 07:07:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45200 * 1
3 3 C 1.34229 * 116.99747 * 2 1
4 4 O 1.20820 * 120.00426 * 0.02562 * 3 2 1
5 5 C 1.50706 * 119.99759 * 180.02562 * 3 2 1
6 6 N 1.46500 * 109.47053 * 180.02562 * 5 3 2
7 7 C 1.34776 * 119.99657 * 90.00458 * 6 5 3
8 8 O 1.21666 * 120.00548 * 9.42831 * 7 6 5
9 9 C 1.46891 * 119.99751 * 189.43355 * 7 6 5
10 10 C 1.36127 * 125.43682 * 26.64992 * 9 7 6
11 11 C 1.41699 * 107.74883 * 180.24474 * 10 9 7
12 12 C 1.40014 * 133.35319 * 179.81758 * 11 10 9
13 13 C 1.36581 * 119.83556 * 179.97438 * 12 11 10
14 14 C 1.38860 * 120.59368 * 0.02562 * 13 12 11
15 15 C 1.37842 * 120.63767 * 359.97308 * 14 13 12
16 16 C 1.39082 * 119.81070 * 0.02562 * 15 14 13
17 17 N 1.37843 * 133.16204 * 180.02562 * 16 15 14
18 18 C 1.36891 * 125.61703 * 359.93875 * 17 16 15
19 19 H 1.08001 * 119.99604 * 228.31365 * 18 17 16
20 20 C 1.39010 * 120.00127 * 48.31753 * 18 17 16
21 21 N 1.31344 * 120.00139 * 187.75386 * 20 18 17
22 22 Si 1.86803 * 120.00079 * 7.47830 * 20 18 17
23 23 H 1.48493 * 109.47145 * 264.41591 * 22 20 18
24 24 H 1.48509 * 109.46878 * 24.41634 * 22 20 18
25 25 H 1.48501 * 109.46952 * 144.41493 * 22 20 18
26 26 C 1.46501 * 120.00009 * 269.99949 * 6 5 3
27 27 C 1.52994 * 109.47037 * 311.42648 * 26 6 5
28 28 C 1.53001 * 109.46828 * 71.42413 * 26 6 5
29 29 H 1.09003 * 109.47298 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.46867 * 299.99068 * 1 2 3
31 31 H 1.08995 * 109.47432 * 59.99552 * 1 2 3
32 32 H 1.08996 * 109.46926 * 60.00631 * 5 3 2
33 33 H 1.08997 * 109.47506 * 300.00754 * 5 3 2
34 34 H 1.07995 * 126.12646 * 0.02562 * 10 9 7
35 35 H 1.08002 * 120.08326 * 359.95155 * 12 11 10
36 36 H 1.07991 * 119.70472 * 180.02562 * 13 12 11
37 37 H 1.07998 * 119.67810 * 179.97438 * 14 13 12
38 38 H 1.07993 * 120.09605 * 180.02562 * 15 14 13
39 39 H 0.97005 * 119.99665 * 359.72517 * 21 20 18
40 40 H 1.08999 * 109.46840 * 191.41968 * 26 6 5
41 41 H 1.08999 * 109.47861 * 59.99945 * 27 26 6
42 42 H 1.09004 * 109.46976 * 180.02562 * 27 26 6
43 43 H 1.09001 * 109.47250 * 299.99757 * 27 26 6
44 44 H 1.09002 * 109.47380 * 60.00119 * 28 26 6
45 45 H 1.09004 * 109.47185 * 179.97438 * 28 26 6
46 46 H 1.09002 * 109.47499 * 299.99652 * 28 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 -0.0006
6 7 3.9817 2.6798 0.0002
7 6 4.1733 3.3252 1.1677
8 8 4.1704 2.7040 2.2139
9 6 4.3856 4.7786 1.1772
10 6 3.9290 5.6491 0.2355
11 6 4.3505 6.9495 0.6088
12 6 4.1837 8.2157 0.0349
13 6 4.7202 9.3139 0.6443
14 6 5.4318 9.1873 1.8300
15 6 5.6093 7.9514 2.4141
16 6 5.0722 6.8185 1.8121
17 7 5.0795 5.4808 2.1445
18 6 5.6793 4.9369 3.2483
19 1 6.3146 4.0696 3.1453
20 6 5.4705 5.5007 4.5016
21 7 6.1613 5.0775 5.5355
22 14 4.2130 6.8657 4.7141
23 1 4.8949 8.1828 4.6405
24 1 3.1959 6.7739 3.6359
25 1 3.5486 6.7254 6.0347
26 6 4.1888 3.3830 -1.2682
27 6 5.0636 2.5289 -2.1880
28 6 2.8367 3.6340 -1.9389
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 3.9556 0.7811 -0.8909
33 1 3.9565 0.7805 0.8890
34 1 3.3522 5.3939 -0.6411
35 1 3.6324 8.3236 -0.8875
36 1 4.5899 10.2896 0.2001
37 1 5.8500 10.0656 2.2991
38 1 6.1639 7.8631 3.3366
39 1 6.8143 4.3688 5.4252
40 1 4.6829 4.3360 -1.0787
41 1 4.5695 1.5759 -2.3774
42 1 5.2181 3.0524 -3.1315
43 1 6.0268 2.3501 -1.7102
44 1 2.2135 4.2426 -1.2836
45 1 2.9908 4.1577 -2.8824
46 1 2.3426 2.6811 -2.1283
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000609216596.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:25
Heat of formation + Delta-G solvation = -56.927985 kcal
Electronic energy + Delta-G solvation = -31605.732166 eV
Core-core repulsion = 27461.321098 eV
Total energy + Delta-G solvation = -4144.411068 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.70419 -41.73605 -40.44632 -38.14090 -37.66452 -37.29755 -35.52732 -33.31670
-32.95569 -31.12795 -30.80852 -29.45872 -28.16576 -27.77908 -26.33579 -24.76836
-22.95788 -22.87770 -22.29195 -21.49161 -20.71131 -19.85984 -18.87983 -18.39374
-17.92399 -17.60018 -17.34922 -17.33069 -16.82244 -16.52344 -15.84839 -15.63621
-15.46294 -15.31980 -14.89229 -14.80343 -14.51710 -14.47010 -14.37473 -14.30235
-14.07601 -13.53333 -13.35931 -13.06976 -12.89986 -12.81780 -12.62398 -12.48932
-12.34330 -12.24720 -12.13206 -12.00755 -11.89198 -11.80830 -11.65016 -11.47078
-11.17934 -11.08621 -10.38758 -10.00562 -9.43062 -8.96596 -8.56891 -6.66369
-0.03839 0.91151 1.04751 1.10221 1.19877 1.27060 1.40675 1.53597
1.86545 2.05375 2.30732 2.64315 2.73555 3.13891 3.51214 3.70189
3.84774 3.97559 4.04761 4.16828 4.26792 4.27645 4.28736 4.30067
4.33993 4.41276 4.54496 4.64259 4.66082 4.68623 4.77360 4.81666
4.94616 4.99508 5.03208 5.06269 5.18201 5.24421 5.27280 5.39031
5.44544 5.47223 5.64131 5.73272 5.81080 5.96639 6.08461 6.24164
6.41210 6.62161 6.67002 7.03694 7.21810 8.09290
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.012267 B = 0.004459 C = 0.003786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2281.932229 B = 6277.405174 C = 7393.648090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.361 6.361
3 C 0.442 3.558
4 O -0.520 6.520
5 C 0.119 3.881
6 N -0.581 5.581
7 C 0.587 3.413
8 O -0.570 6.570
9 C -0.040 4.040
10 C -0.172 4.172
11 C -0.142 4.142
12 C -0.067 4.067
13 C -0.151 4.151
14 C -0.102 4.102
15 C -0.159 4.159
16 C 0.043 3.957
17 N -0.295 5.295
18 C -0.408 4.408
19 H 0.059 0.941
20 C 0.007 3.993
21 N -0.878 5.878
22 Si 1.074 2.926
23 H -0.220 1.220
24 H -0.287 1.287
25 H -0.284 1.284
26 C 0.103 3.897
27 C -0.156 4.156
28 C -0.152 4.152
29 H 0.135 0.865
30 H 0.048 0.952
31 H 0.069 0.931
32 H 0.169 0.831
33 H 0.115 0.885
34 H 0.180 0.820
35 H 0.154 0.846
36 H 0.161 0.839
37 H 0.149 0.851
38 H 0.102 0.898
39 H 0.270 0.730
40 H 0.103 0.897
41 H 0.077 0.923
42 H 0.098 0.902
43 H 0.052 0.948
44 H 0.046 0.954
45 H 0.097 0.903
46 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.069 -2.374 -20.066 21.407
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.276 6.276
3 C 0.284 3.716
4 O -0.408 6.408
5 C -0.005 4.005
6 N -0.314 5.314
7 C 0.378 3.622
8 O -0.449 6.449
9 C -0.154 4.154
10 C -0.199 4.199
11 C -0.146 4.146
12 C -0.086 4.086
13 C -0.170 4.170
14 C -0.122 4.122
15 C -0.179 4.179
16 C -0.070 4.070
17 N 0.040 4.960
18 C -0.536 4.536
19 H 0.077 0.923
20 C -0.200 4.200
21 N -0.509 5.509
22 Si 0.896 3.104
23 H -0.143 1.143
24 H -0.214 1.214
25 H -0.211 1.211
26 C 0.002 3.998
27 C -0.213 4.213
28 C -0.210 4.210
29 H 0.153 0.847
30 H 0.066 0.934
31 H 0.087 0.913
32 H 0.186 0.814
33 H 0.133 0.867
34 H 0.197 0.803
35 H 0.171 0.829
36 H 0.178 0.822
37 H 0.167 0.833
38 H 0.120 0.880
39 H 0.080 0.920
40 H 0.121 0.879
41 H 0.096 0.904
42 H 0.117 0.883
43 H 0.072 0.928
44 H 0.065 0.935
45 H 0.115 0.885
46 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -7.745 -1.658 -18.055 19.716
hybrid contribution 0.792 -1.894 0.069 2.055
sum -6.952 -3.553 -17.986 19.607
Atomic orbital electron populations
1.23526 0.74820 1.05719 1.02232 1.86480 1.24964 1.32315 1.83885
1.24665 0.93218 0.81709 0.72017 1.90684 1.67486 1.37205 1.45440
1.21088 0.86694 0.83905 1.08797 1.47482 1.66862 1.11028 1.05996
1.17512 0.75283 0.85902 0.83546 1.90777 1.52063 1.68598 1.33432
1.20285 1.05939 0.92650 0.96571 1.21354 1.06967 0.90302 1.01270
1.18463 1.04677 0.95371 0.96111 1.20681 0.98696 0.89252 0.99923
1.20942 1.00355 0.99622 0.96054 1.21149 0.99258 0.95221 0.96554
1.20400 1.04303 0.91919 1.01253 1.19014 1.04884 0.85160 0.97921
1.40244 1.35109 1.04151 1.16518 1.20318 1.30548 1.16564 0.86204
0.92332 1.27598 0.99717 1.02512 0.90123 1.70820 1.21621 1.26687
1.31735 0.83707 0.74817 0.76034 0.75864 1.14315 1.21351 1.21098
1.22040 0.98127 0.97875 0.81773 1.22158 0.98821 1.00682 0.99668
1.22189 0.95321 1.02341 1.01135 0.84655 0.93360 0.91271 0.81352
0.86714 0.80347 0.82856 0.82163 0.83311 0.87988 0.91985 0.87891
0.90413 0.88330 0.92843 0.93534 0.88472 0.92550
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.54 10.56 113.37 1.20 1.74 16
2 O -0.36 -8.58 10.57 -51.41 -0.54 -9.13 16
3 C 0.44 12.73 7.19 71.24 0.51 13.24 16
4 O -0.52 -18.16 13.86 21.98 0.30 -17.85 16
5 C 0.12 3.19 5.76 85.63 0.49 3.68 16
6 N -0.58 -19.30 1.98 -806.60 -1.60 -20.90 16
7 C 0.59 27.50 7.44 86.51 0.64 28.14 16
8 O -0.57 -31.84 15.52 -4.24 -0.07 -31.91 16
9 C -0.04 -1.96 6.21 39.91 0.25 -1.71 16
10 C -0.17 -6.96 8.36 22.63 0.19 -6.77 16
11 C -0.14 -5.81 6.16 -21.34 -0.13 -5.94 16
12 C -0.07 -2.08 10.06 22.31 0.22 -1.86 16
13 C -0.15 -4.27 9.97 22.03 0.22 -4.05 16
14 C -0.10 -3.41 10.02 22.32 0.22 -3.19 16
15 C -0.16 -7.00 6.77 22.38 0.15 -6.85 16
16 C 0.04 2.08 4.86 39.06 0.19 2.27 16
17 N -0.29 -16.24 2.39 -331.33 -0.79 -17.03 16
18 C -0.41 -25.20 8.91 84.09 0.75 -24.45 16
19 H 0.06 3.96 8.05 -2.91 -0.02 3.94 16
20 C 0.01 0.43 5.26 84.95 0.45 0.87 16
21 N -0.88 -54.71 13.69 21.67 0.30 -54.41 16
22 Si 1.07 55.36 24.11 68.60 1.65 57.02 16
23 H -0.22 -9.80 5.77 99.48 0.57 -9.23 16
24 H -0.29 -15.48 6.78 99.48 0.67 -14.80 16
25 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16
26 C 0.10 2.58 2.46 44.99 0.11 2.69 16
27 C -0.16 -2.59 8.90 71.98 0.64 -1.95 16
28 C -0.15 -3.29 7.13 71.98 0.51 -2.78 16
29 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16
30 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16
31 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16
32 H 0.17 2.76 5.91 -2.39 -0.01 2.75 16
33 H 0.11 3.41 7.31 -2.39 -0.02 3.40 16
34 H 0.18 5.78 4.00 -2.91 -0.01 5.77 16
35 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16
36 H 0.16 3.04 8.06 -2.92 -0.02 3.02 16
37 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16
38 H 0.10 4.82 5.78 -2.91 -0.02 4.80 16
39 H 0.27 16.81 8.72 -92.70 -0.81 16.00 16
40 H 0.10 2.99 4.64 -2.39 -0.01 2.97 16
41 H 0.08 0.97 6.43 -2.39 -0.02 0.95 16
42 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16
43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16
44 H 0.05 1.28 6.38 -2.39 -0.02 1.26 16
45 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16
46 H 0.06 1.18 6.64 -2.39 -0.02 1.16 16
Total: -1.00 -85.03 364.65 6.69 -78.33
By element:
Atomic # 1 Polarization: 21.96 SS G_CDS: 0.82 Total: 22.78 kcal
Atomic # 6 Polarization: -13.53 SS G_CDS: 6.62 Total: -6.91 kcal
Atomic # 7 Polarization: -90.24 SS G_CDS: -2.09 Total: -92.34 kcal
Atomic # 8 Polarization: -58.58 SS G_CDS: -0.30 Total: -58.89 kcal
Atomic # 14 Polarization: 55.36 SS G_CDS: 1.65 Total: 57.02 kcal
Total: -85.03 6.69 -78.33 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609216596.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.404 kcal
(2) G-P(sol) polarization free energy of solvation -85.026 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.622 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.694 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.332 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.928 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds