Wall clock time and date at job start Sat Apr 11 2020 07:05:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53000 * 109.47016 * 2 1
4 4 C 1.52999 * 109.47527 * 119.99966 * 2 1 3
5 5 C 1.52991 * 109.47488 * 185.00311 * 4 2 1
6 6 C 1.47203 * 109.46944 * 305.00564 * 4 2 1
7 7 N 3.43543 * 81.12762 * 83.60307 * 2 1 3
8 8 N 1.46502 * 109.47104 * 64.99921 * 4 2 1
9 9 C 1.34778 * 120.00192 * 180.02562 * 8 4 2
10 10 O 1.21276 * 119.99877 * 0.02562 * 9 8 4
11 11 C 1.50695 * 119.99781 * 180.02562 * 9 8 4
12 12 O 1.45203 * 109.46927 * 179.97438 * 11 9 8
13 13 C 1.34774 * 117.00194 * 180.02562 * 12 11 9
14 14 O 1.21511 * 119.99871 * 359.97438 * 13 12 11
15 15 C 1.47503 * 120.00197 * 180.02562 * 13 12 11
16 16 C 1.40070 * 119.90192 * 359.72132 * 15 13 12
17 17 C 1.36292 * 120.10246 * 179.76598 * 16 15 13
18 18 C 1.40898 * 119.89815 * 0.50818 * 17 16 15
19 19 C 1.41093 * 120.09973 * 179.71926 * 18 17 16
20 20 H 1.08004 * 120.00092 * 205.08745 * 19 18 17
21 21 C 1.40242 * 119.99823 * 25.09257 * 19 18 17
22 22 N 1.30633 * 120.00082 * 18.01490 * 21 19 18
23 23 Si 1.86802 * 119.99817 * 198.01161 * 21 19 18
24 24 H 1.48508 * 109.46951 * 94.52905 * 23 21 19
25 25 H 1.48501 * 109.47201 * 214.52658 * 23 21 19
26 26 H 1.48503 * 109.47316 * 334.53085 * 23 21 19
27 27 C 1.40896 * 119.80434 * 359.74802 * 18 17 16
28 28 C 1.36306 * 119.89742 * 359.97438 * 27 18 17
29 29 H 1.09004 * 109.47426 * 60.00122 * 1 2 3
30 30 H 1.09002 * 109.47082 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47215 * 299.99923 * 1 2 3
32 32 H 1.09000 * 109.47215 * 240.00077 * 2 1 3
33 33 H 1.08995 * 109.47496 * 179.97438 * 3 2 1
34 34 H 1.08999 * 109.47610 * 300.00108 * 3 2 1
35 35 H 1.09000 * 109.47066 * 59.99985 * 3 2 1
36 36 H 1.09004 * 109.47394 * 179.97438 * 5 4 2
37 37 H 1.09007 * 109.47119 * 299.99825 * 5 4 2
38 38 H 1.08998 * 109.47403 * 60.00084 * 5 4 2
39 39 H 0.97006 * 119.99658 * 0.02562 * 8 4 2
40 40 H 1.09004 * 109.47648 * 299.99932 * 11 9 8
41 41 H 1.08998 * 109.47371 * 60.00099 * 11 9 8
42 42 H 1.08001 * 119.94421 * 0.02562 * 16 15 13
43 43 H 1.08004 * 120.05469 * 180.23379 * 17 16 15
44 44 H 0.97001 * 119.99997 * 179.97438 * 22 21 19
45 45 H 1.07999 * 120.05494 * 179.97438 * 27 18 17
46 46 H 1.07999 * 119.95069 * 179.97438 * 28 27 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 3.5648 -0.6132 1.3137
6 6 1.4530 -0.1007 2.4481
7 7 1.0001 0.3782 3.3732
8 7 1.6525 -2.1328 1.1906
9 6 1.9957 -2.9680 2.1911
10 8 2.6249 -2.5509 3.1403
11 6 1.5975 -4.4202 2.1305
12 8 2.0815 -5.1047 3.3161
13 6 1.8079 -6.4204 3.4175
14 8 1.1816 -6.9802 2.5395
15 6 2.2677 -7.1807 4.5949
16 6 2.9936 -6.5345 5.6036
17 6 3.4163 -7.2320 6.6955
18 6 3.1313 -8.6076 6.8037
19 6 3.5720 -9.3351 7.9295
20 1 3.7282 -10.4012 7.8562
21 6 3.8071 -8.6737 9.1436
22 7 3.3004 -7.4875 9.3501
23 14 4.8448 -9.4892 10.4656
24 1 6.2527 -9.0333 10.3412
25 1 4.3211 -9.1184 11.8049
26 1 4.7857 -10.9639 10.3018
27 6 2.4055 -9.2547 5.7842
28 6 1.9818 -8.5480 4.6983
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 3.1299 1.4426 0.0005
34 1 1.6766 1.9564 -0.8899
35 1 1.6766 1.9563 0.8900
36 1 3.9281 -1.1266 2.2039
37 1 3.9995 -1.0727 0.4259
38 1 3.8531 0.4370 1.3574
39 1 1.1489 -2.4664 0.4315
40 1 0.5112 -4.4975 2.0838
41 1 2.0328 -4.8795 1.2430
42 1 3.2150 -5.4809 5.5178
43 1 3.9727 -6.7320 7.4746
44 1 3.4627 -7.0302 10.1900
45 1 2.1851 -10.3091 5.8628
46 1 1.4257 -9.0433 3.9161
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000758677345.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:52
Heat of formation + Delta-G solvation = -82.802402 kcal
Electronic energy + Delta-G solvation = -28835.428202 eV
Core-core repulsion = 24689.895136 eV
Total energy + Delta-G solvation = -4145.533067 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.83712 -39.63752 -38.14611 -37.38387 -35.75304 -35.58158 -33.95745 -33.82828
-31.07105 -30.39412 -29.51234 -28.69658 -27.33495 -26.00001 -24.73433 -22.48569
-22.16229 -20.98683 -20.70505 -20.01936 -18.28948 -17.63212 -17.55862 -16.74690
-16.34542 -16.11134 -15.79530 -15.43377 -15.21013 -14.84820 -14.39607 -14.18850
-13.96970 -13.73952 -13.41912 -13.37114 -13.02385 -12.93671 -12.87704 -12.73823
-12.52773 -12.50037 -12.26510 -12.11432 -12.08602 -11.87156 -11.63089 -11.43689
-11.39582 -11.32509 -11.29622 -10.99685 -10.72360 -10.38064 -10.15427 -9.93791
-9.73713 -9.63227 -9.48502 -9.38600 -7.75546 -7.65072 -7.09913 -4.68384
2.00849 2.01702 2.31494 2.58242 2.84642 2.86321 2.93363 2.96802
3.03738 3.50684 3.58852 3.59249 3.70594 4.00230 4.25627 4.40641
4.45307 4.49499 4.83150 4.90675 5.09380 5.10505 5.12301 5.21106
5.27479 5.31348 5.38159 5.46033 5.51155 5.66903 5.71121 5.81904
5.92283 5.97423 6.21536 6.26403 6.73778 6.81003 6.87968 6.97624
7.03715 7.07737 7.35773 7.41741 7.65208 7.76957 7.83855 7.88710
8.00012 8.35403 8.55784 8.64337 8.69138 9.81462
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.018458 B = 0.002056 C = 0.001911
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.574367 B =13617.715422 C =14648.180668
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.092 4.092
3 C -0.153 4.153
4 C 0.285 3.715
5 C -0.169 4.169
6 C 0.204 3.796
7 N -0.410 5.410
8 N -0.724 5.724
9 C 0.517 3.483
10 O -0.495 6.495
11 C 0.051 3.949
12 O -0.336 6.336
13 C 0.516 3.484
14 O -0.553 6.553
15 C -0.275 4.275
16 C -0.040 4.040
17 C -0.185 4.185
18 C 0.132 3.868
19 C -0.433 4.433
20 H 0.088 0.912
21 C 0.072 3.928
22 N -0.761 5.761
23 Si 0.916 3.084
24 H -0.264 1.264
25 H -0.274 1.274
26 H -0.258 1.258
27 C -0.239 4.239
28 C -0.017 4.017
29 H 0.068 0.932
30 H 0.061 0.939
31 H 0.057 0.943
32 H 0.101 0.899
33 H 0.069 0.931
34 H 0.068 0.932
35 H 0.057 0.943
36 H 0.089 0.911
37 H 0.080 0.920
38 H 0.078 0.922
39 H 0.410 0.590
40 H 0.096 0.904
41 H 0.099 0.901
42 H 0.104 0.896
43 H 0.121 0.879
44 H 0.290 0.710
45 H 0.102 0.898
46 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.772 13.373 -17.938 22.387
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.112 4.112
3 C -0.211 4.211
4 C 0.195 3.805
5 C -0.228 4.228
6 C -0.116 4.116
7 N -0.086 5.086
8 N -0.382 5.382
9 C 0.302 3.698
10 O -0.367 6.367
11 C -0.027 4.027
12 O -0.252 6.252
13 C 0.369 3.631
14 O -0.448 6.448
15 C -0.278 4.278
16 C -0.059 4.059
17 C -0.204 4.204
18 C 0.128 3.872
19 C -0.460 4.460
20 H 0.106 0.894
21 C -0.151 4.151
22 N -0.383 5.383
23 Si 0.740 3.260
24 H -0.188 1.188
25 H -0.199 1.199
26 H -0.181 1.181
27 C -0.258 4.258
28 C -0.035 4.035
29 H 0.087 0.913
30 H 0.080 0.920
31 H 0.076 0.924
32 H 0.119 0.881
33 H 0.088 0.912
34 H 0.087 0.913
35 H 0.076 0.924
36 H 0.108 0.892
37 H 0.099 0.901
38 H 0.096 0.904
39 H 0.247 0.753
40 H 0.114 0.886
41 H 0.117 0.883
42 H 0.122 0.878
43 H 0.139 0.861
44 H 0.101 0.899
45 H 0.120 0.880
46 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -1.199 14.427 -15.872 21.482
hybrid contribution 0.078 -0.618 -0.150 0.641
sum -1.121 13.809 -16.022 21.182
Atomic orbital electron populations
1.21978 0.93981 1.02668 1.02883 1.21429 0.96958 0.97375 0.95461
1.21962 1.02084 0.94234 1.02812 1.17710 0.95229 0.80095 0.87446
1.22366 0.90995 1.04017 1.05398 1.29110 0.93730 0.94312 0.94431
1.81175 1.08675 1.08677 1.10034 1.45969 1.59942 1.07396 1.24869
1.20433 0.79426 0.87678 0.82247 1.90775 1.36976 1.77050 1.31902
1.22378 1.01165 0.89132 0.90007 1.86705 1.72917 1.24669 1.40941
1.21684 0.76095 0.78566 0.86716 1.90696 1.41703 1.70007 1.42363
1.18143 1.19040 0.93750 0.96858 1.20703 0.94382 0.98092 0.92737
1.21003 1.05927 0.95244 0.98217 1.17868 0.85929 0.92260 0.91128
1.19951 1.35767 0.96490 0.93752 0.89385 1.26179 0.93985 0.94610
1.00335 1.69745 1.30777 1.12529 1.25254 0.86150 0.80320 0.80795
0.78775 1.18846 1.19875 1.18129 1.20676 1.07999 0.99202 0.97967
1.20336 0.95290 0.91809 0.96086 0.91252 0.91954 0.92379 0.88055
0.91161 0.91264 0.92389 0.89231 0.90128 0.90360 0.75328 0.88575
0.88315 0.87756 0.86106 0.89910 0.88009 0.87900
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.77 8.74 37.15 0.32 -0.44 16
2 C -0.09 -0.42 2.32 -90.62 -0.21 -0.63 16
3 C -0.15 -0.66 8.51 37.16 0.32 -0.35 16
4 C 0.28 2.29 0.51 -134.61 -0.07 2.23 16
5 C -0.17 -1.31 7.87 37.15 0.29 -1.02 16
6 C 0.20 2.50 10.22 -20.76 -0.21 2.28 16
7 N -0.41 -6.27 18.54 42.15 0.78 -5.49 16
8 N -0.72 -5.87 4.81 -50.23 -0.24 -6.11 16
9 C 0.52 6.69 7.32 -10.99 -0.08 6.61 16
10 O -0.50 -8.67 13.71 -14.10 -0.19 -8.86 16
11 C 0.05 0.70 5.95 36.00 0.21 0.92 16
12 O -0.34 -6.58 8.98 -47.38 -0.43 -7.00 16
13 C 0.52 11.26 7.89 34.51 0.27 11.53 16
14 O -0.55 -12.25 16.11 -19.27 -0.31 -12.56 16
15 C -0.28 -6.53 5.89 -104.75 -0.62 -7.15 16
16 C -0.04 -0.97 9.55 -39.60 -0.38 -1.35 16
17 C -0.18 -4.70 8.63 -39.28 -0.34 -5.04 16
18 C 0.13 3.36 5.57 -106.80 -0.59 2.77 16
19 C -0.43 -10.66 9.04 -37.75 -0.34 -11.00 16
20 H 0.09 2.04 7.91 -52.48 -0.42 1.63 16
21 C 0.07 1.67 5.13 -17.31 -0.09 1.58 16
22 N -0.76 -18.47 10.99 55.56 0.61 -17.86 16
23 Si 0.92 17.19 29.60 -169.99 -5.03 12.16 16
24 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16
25 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16
26 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16
27 C -0.24 -5.71 9.73 -39.27 -0.38 -6.09 16
28 C -0.02 -0.39 9.52 -39.59 -0.38 -0.76 16
29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16
30 H 0.06 0.26 7.18 -51.93 -0.37 -0.11 16
31 H 0.06 0.41 7.09 -51.93 -0.37 0.05 16
32 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16
33 H 0.07 0.25 6.34 -51.93 -0.33 -0.08 16
34 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16
35 H 0.06 0.35 7.38 -51.93 -0.38 -0.03 16
36 H 0.09 1.02 6.17 -51.93 -0.32 0.70 16
37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.08 0.49 6.34 -51.93 -0.33 0.16 16
39 H 0.41 1.80 7.66 -40.82 -0.31 1.49 16
40 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16
41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16
42 H 0.10 2.42 7.59 -52.49 -0.40 2.02 16
43 H 0.12 3.12 6.19 -52.48 -0.33 2.80 16
44 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16
45 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16
46 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16
LS Contribution 389.13 15.07 5.86 5.86
Total: -1.00 -32.91 389.13 -7.26 -40.18
By element:
Atomic # 1 Polarization: 11.64 SS G_CDS: -6.05 Total: 5.59 kcal
Atomic # 6 Polarization: -3.65 SS G_CDS: -2.27 Total: -5.92 kcal
Atomic # 7 Polarization: -30.61 SS G_CDS: 1.15 Total: -29.46 kcal
Atomic # 8 Polarization: -27.49 SS G_CDS: -0.93 Total: -28.42 kcal
Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -32.91 -7.26 -40.18 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000758677345.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.624 kcal
(2) G-P(sol) polarization free energy of solvation -32.915 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.802 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds