Wall clock time and date at job start Sat Apr 11 2020 07:05:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53000 * 109.47016 * 2 1
4 4 C 1.52999 * 109.47527 * 119.99966 * 2 1 3
5 5 C 1.52991 * 109.47488 * 185.00311 * 4 2 1
6 6 C 1.47203 * 109.46944 * 305.00564 * 4 2 1
7 7 N 3.43543 * 81.12762 * 83.60307 * 2 1 3
8 8 N 1.46502 * 109.47104 * 64.99921 * 4 2 1
9 9 C 1.34778 * 120.00192 * 180.02562 * 8 4 2
10 10 O 1.21276 * 119.99877 * 0.02562 * 9 8 4
11 11 C 1.50695 * 119.99781 * 180.02562 * 9 8 4
12 12 O 1.45203 * 109.46927 * 179.97438 * 11 9 8
13 13 C 1.34774 * 117.00194 * 180.02562 * 12 11 9
14 14 O 1.21511 * 119.99871 * 359.97438 * 13 12 11
15 15 C 1.47503 * 120.00197 * 180.02562 * 13 12 11
16 16 C 1.40070 * 119.90192 * 359.72132 * 15 13 12
17 17 C 1.36292 * 120.10246 * 179.76598 * 16 15 13
18 18 C 1.40898 * 119.89815 * 0.50818 * 17 16 15
19 19 C 1.41093 * 120.09973 * 179.71926 * 18 17 16
20 20 H 1.08004 * 120.00092 * 205.08745 * 19 18 17
21 21 C 1.40242 * 119.99823 * 25.09257 * 19 18 17
22 22 N 1.30633 * 120.00082 * 18.01490 * 21 19 18
23 23 Si 1.86802 * 119.99817 * 198.01161 * 21 19 18
24 24 H 1.48508 * 109.46951 * 94.52905 * 23 21 19
25 25 H 1.48501 * 109.47201 * 214.52658 * 23 21 19
26 26 H 1.48503 * 109.47316 * 334.53085 * 23 21 19
27 27 C 1.40896 * 119.80434 * 359.74802 * 18 17 16
28 28 C 1.36306 * 119.89742 * 359.97438 * 27 18 17
29 29 H 1.09004 * 109.47426 * 60.00122 * 1 2 3
30 30 H 1.09002 * 109.47082 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47215 * 299.99923 * 1 2 3
32 32 H 1.09000 * 109.47215 * 240.00077 * 2 1 3
33 33 H 1.08995 * 109.47496 * 179.97438 * 3 2 1
34 34 H 1.08999 * 109.47610 * 300.00108 * 3 2 1
35 35 H 1.09000 * 109.47066 * 59.99985 * 3 2 1
36 36 H 1.09004 * 109.47394 * 179.97438 * 5 4 2
37 37 H 1.09007 * 109.47119 * 299.99825 * 5 4 2
38 38 H 1.08998 * 109.47403 * 60.00084 * 5 4 2
39 39 H 0.97006 * 119.99658 * 0.02562 * 8 4 2
40 40 H 1.09004 * 109.47648 * 299.99932 * 11 9 8
41 41 H 1.08998 * 109.47371 * 60.00099 * 11 9 8
42 42 H 1.08001 * 119.94421 * 0.02562 * 16 15 13
43 43 H 1.08004 * 120.05469 * 180.23379 * 17 16 15
44 44 H 0.97001 * 119.99997 * 179.97438 * 22 21 19
45 45 H 1.07999 * 120.05494 * 179.97438 * 27 18 17
46 46 H 1.07999 * 119.95069 * 179.97438 * 28 27 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 3.5648 -0.6132 1.3137
6 6 1.4530 -0.1007 2.4481
7 7 1.0001 0.3782 3.3732
8 7 1.6525 -2.1328 1.1906
9 6 1.9957 -2.9680 2.1911
10 8 2.6249 -2.5509 3.1403
11 6 1.5975 -4.4202 2.1305
12 8 2.0815 -5.1047 3.3161
13 6 1.8079 -6.4204 3.4175
14 8 1.1816 -6.9802 2.5395
15 6 2.2677 -7.1807 4.5949
16 6 2.9936 -6.5345 5.6036
17 6 3.4163 -7.2320 6.6955
18 6 3.1313 -8.6076 6.8037
19 6 3.5720 -9.3351 7.9295
20 1 3.7282 -10.4012 7.8562
21 6 3.8071 -8.6737 9.1436
22 7 3.3004 -7.4875 9.3501
23 14 4.8448 -9.4892 10.4656
24 1 6.2527 -9.0333 10.3412
25 1 4.3211 -9.1184 11.8049
26 1 4.7857 -10.9639 10.3018
27 6 2.4055 -9.2547 5.7842
28 6 1.9818 -8.5480 4.6983
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 3.1299 1.4426 0.0005
34 1 1.6766 1.9564 -0.8899
35 1 1.6766 1.9563 0.8900
36 1 3.9281 -1.1266 2.2039
37 1 3.9995 -1.0727 0.4259
38 1 3.8531 0.4370 1.3574
39 1 1.1489 -2.4664 0.4315
40 1 0.5112 -4.4975 2.0838
41 1 2.0328 -4.8795 1.2430
42 1 3.2150 -5.4809 5.5178
43 1 3.9727 -6.7320 7.4746
44 1 3.4627 -7.0302 10.1900
45 1 2.1851 -10.3091 5.8628
46 1 1.4257 -9.0433 3.9161
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000758677345.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:05:50
Heat of formation + Delta-G solvation = -101.938052 kcal
Electronic energy + Delta-G solvation = -28836.257986 eV
Core-core repulsion = 24689.895136 eV
Total energy + Delta-G solvation = -4146.362851 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 2.17 seconds
Orbital eigenvalues (eV)
-41.82780 -41.11913 -39.38245 -38.92342 -37.17990 -36.71074 -35.76443 -34.59610
-32.34325 -31.64086 -31.39410 -29.71829 -28.06910 -27.53163 -25.46375 -24.15478
-22.91178 -22.82982 -21.77135 -21.50859 -19.41434 -19.19173 -18.91316 -18.04920
-17.63887 -17.61650 -17.06669 -16.59299 -16.07072 -15.81100 -15.75660 -15.47329
-15.21147 -15.00963 -14.68505 -14.50537 -14.17841 -14.10351 -13.97476 -13.88485
-13.79947 -13.55273 -13.50582 -13.24401 -13.10868 -12.91167 -12.88326 -12.71975
-12.67261 -12.41421 -12.10307 -11.82394 -11.81336 -11.80147 -11.77688 -11.44851
-11.33948 -11.16652 -10.92908 -10.59973 -9.65013 -9.54958 -8.86728 -6.56907
0.21177 1.03549 1.12322 1.29078 1.34930 1.39899 1.54027 1.65782
1.72457 1.85939 2.13314 2.42263 2.66102 2.74114 3.45887 3.50113
3.60749 3.74954 4.03831 4.07372 4.09607 4.21664 4.29825 4.35903
4.41384 4.53442 4.64863 4.75373 4.78213 4.91425 4.94730 4.96767
5.00067 5.10139 5.11626 5.13372 5.19395 5.25576 5.29700 5.37824
5.44705 5.54535 5.78898 5.88393 5.95069 6.13132 6.25916 6.42709
6.47819 6.68433 6.80404 6.93913 7.00100 8.08120
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.018458 B = 0.002056 C = 0.001911
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.574367 B =13617.715422 C =14648.180668
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.081 4.081
3 C -0.156 4.156
4 C 0.280 3.720
5 C -0.168 4.168
6 C 0.223 3.777
7 N -0.476 5.476
8 N -0.697 5.697
9 C 0.520 3.480
10 O -0.548 6.548
11 C 0.042 3.958
12 O -0.353 6.353
13 C 0.525 3.475
14 O -0.557 6.557
15 C -0.291 4.291
16 C -0.042 4.042
17 C -0.205 4.205
18 C 0.105 3.895
19 C -0.457 4.457
20 H 0.097 0.903
21 C 0.032 3.968
22 N -0.794 5.794
23 Si 0.993 3.007
24 H -0.260 1.260
25 H -0.266 1.266
26 H -0.250 1.250
27 C -0.247 4.247
28 C -0.018 4.018
29 H 0.089 0.911
30 H 0.070 0.930
31 H 0.027 0.973
32 H 0.142 0.858
33 H 0.080 0.920
34 H 0.088 0.912
35 H 0.032 0.968
36 H 0.050 0.950
37 H 0.112 0.888
38 H 0.092 0.908
39 H 0.432 0.568
40 H 0.116 0.884
41 H 0.130 0.870
42 H 0.105 0.895
43 H 0.108 0.892
44 H 0.298 0.702
45 H 0.118 0.882
46 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.542 13.021 -20.458 24.256
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.101 4.101
3 C -0.213 4.213
4 C 0.190 3.810
5 C -0.227 4.227
6 C -0.096 4.096
7 N -0.152 5.152
8 N -0.355 5.355
9 C 0.306 3.694
10 O -0.424 6.424
11 C -0.035 4.035
12 O -0.269 6.269
13 C 0.377 3.623
14 O -0.452 6.452
15 C -0.294 4.294
16 C -0.061 4.061
17 C -0.224 4.224
18 C 0.101 3.899
19 C -0.483 4.483
20 H 0.115 0.885
21 C -0.188 4.188
22 N -0.417 5.417
23 Si 0.812 3.188
24 H -0.185 1.185
25 H -0.191 1.191
26 H -0.173 1.173
27 C -0.267 4.267
28 C -0.037 4.037
29 H 0.108 0.892
30 H 0.089 0.911
31 H 0.046 0.954
32 H 0.160 0.840
33 H 0.099 0.901
34 H 0.107 0.893
35 H 0.051 0.949
36 H 0.069 0.931
37 H 0.130 0.870
38 H 0.110 0.890
39 H 0.273 0.727
40 H 0.133 0.867
41 H 0.148 0.852
42 H 0.123 0.877
43 H 0.126 0.874
44 H 0.110 0.890
45 H 0.136 0.864
46 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -1.010 14.097 -18.467 23.254
hybrid contribution -0.051 -0.385 0.502 0.634
sum -1.061 13.712 -17.965 22.625
Atomic orbital electron populations
1.22032 0.94223 1.03134 1.02430 1.21531 0.96642 0.97385 0.94521
1.22012 1.02824 0.93933 1.02545 1.18260 0.95561 0.79728 0.87450
1.22390 0.90437 1.04831 1.05016 1.30039 0.92194 0.92953 0.94397
1.81168 1.10964 1.10870 1.12210 1.45727 1.58742 1.06927 1.24150
1.20408 0.78819 0.87777 0.82412 1.90782 1.39600 1.77813 1.34194
1.22856 1.02544 0.89240 0.88863 1.86639 1.72984 1.23569 1.43757
1.21223 0.75783 0.79318 0.85954 1.90676 1.41761 1.70456 1.42287
1.18424 1.18864 0.94444 0.97627 1.20743 0.94430 0.98119 0.92766
1.20978 1.07080 0.95797 0.98564 1.18210 0.86803 0.92525 0.92340
1.20272 1.36579 0.97112 0.94318 0.88509 1.27112 0.94441 0.94963
1.02256 1.69789 1.31579 1.13907 1.26401 0.85017 0.78207 0.79922
0.75667 1.18466 1.19076 1.17265 1.20890 1.07815 1.00098 0.97855
1.20534 0.95067 0.91805 0.96283 0.89213 0.91067 0.95360 0.83984
0.90077 0.89303 0.94912 0.93063 0.86972 0.88975 0.72678 0.86654
0.85211 0.87669 0.87389 0.89026 0.86367 0.86215
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.14 8.74 71.98 0.63 -0.52 16
2 C -0.08 -0.46 2.32 -10.80 -0.03 -0.49 16
3 C -0.16 -0.94 8.51 71.98 0.61 -0.33 16
4 C 0.28 4.00 0.51 1.80 0.00 4.00 16
5 C -0.17 -2.33 7.87 71.98 0.57 -1.76 16
6 C 0.22 5.54 10.22 89.44 0.91 6.45 16
7 N -0.48 -15.33 18.54 20.01 0.37 -14.96 16
8 N -0.70 -9.64 4.81 -431.22 -2.08 -11.71 16
9 C 0.52 12.93 7.32 87.66 0.64 13.57 16
10 O -0.55 -19.59 13.71 15.78 0.22 -19.37 16
11 C 0.04 1.07 5.95 71.23 0.42 1.49 16
12 O -0.35 -13.71 8.98 -50.46 -0.45 -14.17 16
13 C 0.52 22.57 7.89 70.26 0.55 23.13 16
14 O -0.56 -23.73 16.11 19.80 0.32 -23.42 16
15 C -0.29 -13.92 5.89 -19.95 -0.12 -14.04 16
16 C -0.04 -2.09 9.55 22.26 0.21 -1.87 16
17 C -0.20 -10.84 8.63 22.47 0.19 -10.65 16
18 C 0.10 5.47 5.57 -21.28 -0.12 5.36 16
19 C -0.46 -22.77 9.04 23.46 0.21 -22.55 16
20 H 0.10 4.50 7.91 -2.91 -0.02 4.47 16
21 C 0.03 1.51 5.13 85.36 0.44 1.95 16
22 N -0.79 -39.34 10.99 21.87 0.24 -39.10 16
23 Si 0.99 34.83 29.60 68.60 2.03 36.86 16
24 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16
25 H -0.27 -8.95 7.11 99.48 0.71 -8.25 16
26 H -0.25 -8.36 7.11 99.48 0.71 -7.66 16
27 C -0.25 -11.90 9.73 22.47 0.22 -11.68 16
28 C -0.02 -0.86 9.52 22.26 0.21 -0.64 16
29 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16
30 H 0.07 0.37 7.18 -2.39 -0.02 0.35 16
31 H 0.03 0.38 7.09 -2.39 -0.02 0.36 16
32 H 0.14 -0.21 8.14 -2.39 -0.02 -0.23 16
33 H 0.08 0.32 6.34 -2.39 -0.02 0.31 16
34 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16
35 H 0.03 0.37 7.38 -2.39 -0.02 0.36 16
36 H 0.05 1.17 6.17 -2.38 -0.01 1.15 16
37 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16
38 H 0.09 1.00 6.34 -2.39 -0.02 0.99 16
39 H 0.43 2.11 7.66 -92.70 -0.71 1.40 16
40 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16
41 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16
42 H 0.11 5.11 7.59 -2.91 -0.02 5.09 16
43 H 0.11 5.88 6.19 -2.91 -0.02 5.86 16
44 H 0.30 13.22 8.29 -92.71 -0.77 12.45 16
45 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16
46 H 0.12 5.08 7.63 -2.91 -0.02 5.06 16
Total: -1.00 -76.06 389.13 6.54 -69.52
By element:
Atomic # 1 Polarization: 24.61 SS G_CDS: 0.32 Total: 24.93 kcal
Atomic # 6 Polarization: -14.16 SS G_CDS: 5.57 Total: -8.59 kcal
Atomic # 7 Polarization: -64.31 SS G_CDS: -1.46 Total: -65.77 kcal
Atomic # 8 Polarization: -57.04 SS G_CDS: 0.08 Total: -56.96 kcal
Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.86 kcal
Total: -76.06 6.54 -69.52 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000758677345.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.413 kcal
(2) G-P(sol) polarization free energy of solvation -76.063 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.476 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.525 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.938 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.17 seconds