Wall clock time and date at job start Sat Apr 11 2020 07:07:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47197 * 179.97438 * 2 1
4 4 O 1.42901 * 109.46044 * 45.61006 * 3 2 1
5 5 C 1.53035 * 109.45804 * 165.57896 * 3 2 1
6 6 C 1.53197 * 109.31343 * 58.64249 * 5 3 2
7 7 N 1.46929 * 108.77370 * 54.63434 * 6 5 3
8 8 C 1.34774 * 120.63143 * 126.36889 * 7 6 5
9 9 O 1.21589 * 120.00167 * 185.33577 * 8 7 6
10 10 N 1.34773 * 120.00008 * 5.33221 * 8 7 6
11 11 C 1.46500 * 120.00208 * 174.83789 * 10 8 7
12 12 C 1.50704 * 109.47259 * 179.97438 * 11 10 8
13 13 C 1.38324 * 119.96649 * 269.72102 * 12 11 10
14 14 C 1.38276 * 120.13520 * 179.76502 * 13 12 11
15 15 C 1.38117 * 120.06996 * 0.51747 * 14 13 12
16 16 C 1.38860 * 119.93139 * 359.73834 * 15 14 13
17 17 O 1.35748 * 120.06709 * 179.97438 * 16 15 14
18 18 C 1.34832 * 117.00175 * 5.36478 * 17 16 15
19 19 H 1.07999 * 119.99786 * 354.96014 * 18 17 16
20 20 C 1.38655 * 119.99978 * 174.96151 * 18 17 16
21 21 N 1.31550 * 119.99885 * 179.97438 * 20 18 17
22 22 Si 1.86800 * 120.00021 * 0.02562 * 20 18 17
23 23 H 1.48498 * 109.47614 * 89.99956 * 22 20 18
24 24 H 1.48500 * 109.47126 * 209.99680 * 22 20 18
25 25 H 1.48503 * 109.47289 * 329.99657 * 22 20 18
26 26 C 1.38081 * 119.96296 * 90.00266 * 12 11 10
27 27 C 1.46928 * 118.73728 * 306.64403 * 7 6 5
28 28 C 1.52761 * 109.00706 * 53.31008 * 27 7 6
29 29 H 4.38426 * 5.44501 * 180.02562 * 4 1 2
30 30 H 0.96705 * 113.99647 * 299.97018 * 4 3 2
31 31 H 1.09002 * 109.50249 * 298.69474 * 5 3 2
32 32 H 1.09001 * 109.52424 * 178.60928 * 5 3 2
33 33 H 1.08994 * 109.58750 * 294.84781 * 6 5 3
34 34 H 1.09002 * 109.70683 * 174.48852 * 6 5 3
35 35 H 0.97001 * 120.00141 * 355.11365 * 10 8 7
36 36 H 1.08996 * 109.47124 * 300.00248 * 11 10 8
37 37 H 1.09004 * 109.46932 * 60.00403 * 11 10 8
38 38 H 1.08000 * 119.92559 * 0.02562 * 13 12 11
39 39 H 1.08003 * 119.96036 * 180.25596 * 14 13 12
40 40 H 1.08002 * 120.03601 * 179.76902 * 15 14 13
41 41 H 0.97010 * 119.99751 * 180.02562 * 21 20 18
42 42 H 1.08001 * 120.03455 * 359.95347 * 26 12 11
43 43 H 1.08995 * 109.58463 * 173.14514 * 27 7 6
44 44 H 1.09002 * 109.58483 * 293.56858 * 27 7 6
45 45 H 1.09002 * 109.55959 * 185.55225 * 28 27 7
46 46 H 1.08996 * 109.38961 * 65.51465 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 8 3.1225 -0.9417 -0.9628
5 6 3.1552 1.3984 -0.3594
6 6 2.6141 2.4110 0.6549
7 7 2.9771 1.9657 2.0073
8 6 3.6304 2.7905 2.8495
9 8 4.0108 2.3802 3.9291
10 7 3.8621 4.0700 2.4952
11 6 4.4704 4.9966 3.4531
12 6 4.6210 6.3530 2.8136
13 6 5.7815 6.6699 2.1307
14 6 5.9214 7.9115 1.5385
15 6 4.9065 8.8433 1.6364
16 6 3.7425 8.5301 2.3258
17 8 2.7436 9.4439 2.4242
18 6 2.8965 10.5944 1.7379
19 1 3.8184 10.7900 1.2105
20 6 1.8702 11.5262 1.7092
21 7 2.0196 12.6488 1.0399
22 14 0.2759 11.1881 2.6220
23 1 0.3782 11.7118 4.0078
24 1 -0.8479 11.8596 1.9209
25 1 0.0297 9.7242 2.6630
26 6 3.6028 7.2801 2.9151
27 6 2.6197 0.6022 2.4218
28 6 3.1558 -0.3882 1.3896
29 1 -1.0499 0.0000 -0.0003
30 1 2.8378 -1.8510 -0.7975
31 1 2.8111 1.6652 -1.3586
32 1 4.2449 1.4064 -0.3356
33 1 1.5292 2.4705 0.5687
34 1 3.0502 3.3915 0.4638
35 1 3.6224 4.3784 1.6074
36 1 3.8338 5.0785 4.3340
37 1 5.4514 4.6231 3.7471
38 1 6.5780 5.9444 2.0564
39 1 6.8270 8.1545 1.0025
40 1 5.0179 9.8143 1.1769
41 1 1.3017 13.3010 1.0202
42 1 2.6986 7.0334 3.4516
43 1 3.0615 0.3886 3.3950
44 1 1.5352 0.5112 2.4826
45 1 2.8121 -1.3930 1.6352
46 1 4.2455 -0.3643 1.3971
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001350918435.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:23
Heat of formation + Delta-G solvation = -11.397760 kcal
Electronic energy + Delta-G solvation = -29174.501130 eV
Core-core repulsion = 25032.064401 eV
Total energy + Delta-G solvation = -4142.436729 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.83153 -39.43505 -38.93750 -37.05887 -36.10660 -34.69091 -33.33156 -32.46572
-31.85748 -31.40819 -30.47461 -29.38382 -26.28108 -25.34660 -24.86637 -23.71449
-22.27647 -21.84111 -20.76386 -20.23642 -18.90614 -18.55168 -17.77322 -17.14177
-16.88342 -16.33004 -15.87570 -15.41727 -15.33345 -15.26562 -14.98089 -14.71711
-14.34067 -14.14078 -13.95868 -13.82069 -13.60170 -13.32488 -12.91477 -12.71504
-12.57583 -12.39840 -12.18888 -12.04056 -11.93688 -11.79118 -11.52673 -11.46226
-11.05799 -10.95944 -10.95056 -10.91200 -10.76388 -10.38721 -10.23439 -10.16196
-9.48315 -9.20403 -8.95139 -8.72653 -8.36381 -7.50241 -6.48296 -4.15720
1.74967 2.12988 2.28065 2.34770 2.58596 3.09891 3.18034 3.21277
3.35015 3.71114 3.74867 3.79768 4.17708 4.26817 4.32618 4.42593
4.59729 4.64039 4.84076 5.00257 5.01530 5.03262 5.06822 5.16600
5.33207 5.38500 5.40613 5.47809 5.50713 5.61092 5.64954 5.74223
5.78277 5.83202 5.99104 6.12823 6.21879 6.40557 6.46824 6.65826
6.76707 6.98543 7.06985 7.10065 7.12799 7.18694 7.47641 7.71153
7.84551 7.95504 8.50286 8.86577 9.47613 10.59096
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.013103 B = 0.002351 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2136.436711 B =11906.734561 C =12754.938038
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.218 4.218
3 C 0.248 3.752
4 O -0.547 6.547
5 C -0.117 4.117
6 C 0.114 3.886
7 N -0.631 5.631
8 C 0.709 3.291
9 O -0.592 6.592
10 N -0.737 5.737
11 C 0.186 3.814
12 C -0.076 4.076
13 C -0.185 4.185
14 C -0.078 4.078
15 C -0.212 4.212
16 C 0.156 3.844
17 O -0.216 6.216
18 C -0.391 4.391
19 H 0.107 0.893
20 C 0.064 3.936
21 N -0.878 5.878
22 Si 0.905 3.095
23 H -0.273 1.273
24 H -0.282 1.282
25 H -0.260 1.260
26 C -0.170 4.170
27 C 0.133 3.867
28 C -0.155 4.155
29 H 0.219 0.781
30 H 0.381 0.619
31 H 0.088 0.912
32 H 0.086 0.914
33 H 0.074 0.926
34 H 0.089 0.911
35 H 0.398 0.602
36 H 0.071 0.929
37 H 0.073 0.927
38 H 0.109 0.891
39 H 0.112 0.888
40 H 0.134 0.866
41 H 0.280 0.720
42 H 0.118 0.882
43 H 0.100 0.900
44 H 0.066 0.934
45 H 0.081 0.919
46 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.315 -25.394 -2.463 25.515
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.218 4.218
3 C 0.207 3.793
4 O -0.353 6.353
5 C -0.156 4.156
6 C -0.010 4.010
7 N -0.369 5.369
8 C 0.411 3.589
9 O -0.470 6.470
10 N -0.394 5.394
11 C 0.062 3.938
12 C -0.076 4.076
13 C -0.204 4.204
14 C -0.096 4.096
15 C -0.231 4.231
16 C 0.104 3.896
17 O -0.121 6.121
18 C -0.466 4.466
19 H 0.124 0.876
20 C -0.139 4.139
21 N -0.515 5.515
22 Si 0.731 3.269
23 H -0.198 1.198
24 H -0.208 1.208
25 H -0.184 1.184
26 C -0.190 4.190
27 C 0.010 3.990
28 C -0.193 4.193
29 H 0.236 0.764
30 H 0.229 0.771
31 H 0.107 0.893
32 H 0.105 0.895
33 H 0.092 0.908
34 H 0.107 0.893
35 H 0.235 0.765
36 H 0.089 0.911
37 H 0.091 0.909
38 H 0.128 0.872
39 H 0.130 0.870
40 H 0.152 0.848
41 H 0.090 0.910
42 H 0.136 0.864
43 H 0.118 0.882
44 H 0.084 0.916
45 H 0.100 0.900
46 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 0.554 -24.902 -1.829 24.976
hybrid contribution -1.276 -0.155 -0.116 1.290
sum -0.722 -25.058 -1.945 25.144
Atomic orbital electron populations
1.25088 0.95973 0.98625 0.99389 1.23754 0.94944 1.01929 1.01195
1.17994 0.81952 0.90725 0.88625 1.86629 1.75986 1.20611 1.52095
1.21865 1.02382 0.91228 1.00082 1.21626 1.00789 0.97503 0.81072
1.47238 1.61307 1.14199 1.14179 1.15811 0.78498 0.80970 0.83639
1.90902 1.57304 1.75795 1.23030 1.45450 1.67025 1.08748 1.18155
1.20016 0.98433 0.84789 0.90527 1.19283 0.94544 0.94081 0.99718
1.20563 0.98019 0.97668 1.04198 1.20808 0.97734 0.93195 0.97848
1.21369 0.94575 1.01606 1.05600 1.19059 0.88235 0.88846 0.93471
1.83575 1.39692 1.25862 1.62944 1.20763 1.04341 0.91712 1.29830
0.87582 1.24468 0.98840 0.94279 0.96339 1.69643 1.34444 1.07768
1.39658 0.86181 0.81346 0.79713 0.79673 1.19822 1.20775 1.18365
1.20089 1.00128 0.92069 1.06749 1.21283 0.99703 0.79328 0.98731
1.22555 1.02802 0.99975 0.94004 0.76428 0.77107 0.89333 0.89504
0.90786 0.89257 0.76511 0.91069 0.90882 0.87242 0.86962 0.84831
0.90966 0.86401 0.88161 0.91554 0.90001 0.89480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.23 19.25 29.55 0.57 -0.66 16
2 C -0.22 -1.75 9.68 -37.12 -0.36 -2.11 16
3 C 0.25 1.93 1.09 -93.37 -0.10 1.83 16
4 O -0.55 -4.22 12.95 -35.23 -0.46 -4.68 16
5 C -0.12 -0.95 5.25 -26.61 -0.14 -1.09 16
6 C 0.11 0.98 6.04 -3.71 -0.02 0.96 16
7 N -0.63 -6.71 2.98 -178.76 -0.53 -7.24 16
8 C 0.71 9.69 8.29 -86.92 -0.72 8.97 16
9 O -0.59 -10.08 15.77 5.29 0.08 -10.00 16
10 N -0.74 -9.40 5.46 -66.41 -0.36 -9.76 16
11 C 0.19 2.58 5.80 -5.19 -0.03 2.55 16
12 C -0.08 -1.19 5.25 -104.65 -0.55 -1.73 16
13 C -0.19 -2.84 9.70 -39.54 -0.38 -3.23 16
14 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16
15 C -0.21 -4.30 9.17 -39.40 -0.36 -4.66 16
16 C 0.16 3.41 6.65 -39.11 -0.26 3.15 16
17 O -0.22 -5.48 8.59 0.05 0.00 -5.48 16
18 C -0.39 -10.67 9.95 30.89 0.31 -10.36 16
19 H 0.11 2.95 5.44 -52.49 -0.29 2.66 16
20 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16
21 N -0.88 -24.80 13.96 55.48 0.77 -24.03 16
22 Si 0.91 21.19 28.62 -169.99 -4.86 16.33 16
23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
25 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16
26 C -0.17 -3.16 9.65 -39.40 -0.38 -3.54 16
27 C 0.13 1.22 6.07 -3.93 -0.02 1.20 16
28 C -0.15 -1.12 5.21 -26.84 -0.14 -1.26 16
29 H 0.22 0.89 7.80 -54.10 -0.42 0.46 16
30 H 0.38 1.53 9.03 45.56 0.41 1.94 16
31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.07 0.63 7.38 -51.93 -0.38 0.25 16
34 H 0.09 0.72 5.65 -51.93 -0.29 0.42 16
35 H 0.40 4.53 5.95 -40.82 -0.24 4.29 16
36 H 0.07 1.02 8.08 -51.93 -0.42 0.61 16
37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16
38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16
39 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16
40 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16
41 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16
42 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16
43 H 0.10 1.05 6.99 -51.93 -0.36 0.69 16
44 H 0.07 0.58 7.38 -51.93 -0.38 0.19 16
45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
46 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16
LS Contribution 384.68 15.07 5.80 5.80
Total: -1.00 -32.42 384.68 -7.84 -40.26
By element:
Atomic # 1 Polarization: 13.99 SS G_CDS: -5.19 Total: 8.80 kcal
Atomic # 6 Polarization: -6.93 SS G_CDS: -3.09 Total: -10.02 kcal
Atomic # 7 Polarization: -40.91 SS G_CDS: -0.12 Total: -41.03 kcal
Atomic # 8 Polarization: -19.78 SS G_CDS: -0.37 Total: -20.15 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.33 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -32.42 -7.84 -40.26 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001350918435.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.867 kcal
(2) G-P(sol) polarization free energy of solvation -32.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.557 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.398 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds