Wall clock time and date at job start Sat Apr 11 2020 07:07:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47197 * 179.97438 * 2 1
4 4 O 1.42901 * 109.46044 * 45.61006 * 3 2 1
5 5 C 1.53035 * 109.45804 * 165.57896 * 3 2 1
6 6 C 1.53197 * 109.31343 * 58.64249 * 5 3 2
7 7 N 1.46929 * 108.77370 * 54.63434 * 6 5 3
8 8 C 1.34774 * 120.63143 * 126.36889 * 7 6 5
9 9 O 1.21589 * 120.00167 * 185.33577 * 8 7 6
10 10 N 1.34773 * 120.00008 * 5.33221 * 8 7 6
11 11 C 1.46500 * 120.00208 * 174.83789 * 10 8 7
12 12 C 1.50704 * 109.47259 * 179.97438 * 11 10 8
13 13 C 1.38324 * 119.96649 * 269.72102 * 12 11 10
14 14 C 1.38276 * 120.13520 * 179.76502 * 13 12 11
15 15 C 1.38117 * 120.06996 * 0.51747 * 14 13 12
16 16 C 1.38860 * 119.93139 * 359.73834 * 15 14 13
17 17 O 1.35748 * 120.06709 * 179.97438 * 16 15 14
18 18 C 1.34832 * 117.00175 * 5.36478 * 17 16 15
19 19 H 1.07999 * 119.99786 * 354.96014 * 18 17 16
20 20 C 1.38655 * 119.99978 * 174.96151 * 18 17 16
21 21 N 1.31550 * 119.99885 * 179.97438 * 20 18 17
22 22 Si 1.86800 * 120.00021 * 0.02562 * 20 18 17
23 23 H 1.48498 * 109.47614 * 89.99956 * 22 20 18
24 24 H 1.48500 * 109.47126 * 209.99680 * 22 20 18
25 25 H 1.48503 * 109.47289 * 329.99657 * 22 20 18
26 26 C 1.38081 * 119.96296 * 90.00266 * 12 11 10
27 27 C 1.46928 * 118.73728 * 306.64403 * 7 6 5
28 28 C 1.52761 * 109.00706 * 53.31008 * 27 7 6
29 29 H 4.38426 * 5.44501 * 180.02562 * 4 1 2
30 30 H 0.96705 * 113.99647 * 299.97018 * 4 3 2
31 31 H 1.09002 * 109.50249 * 298.69474 * 5 3 2
32 32 H 1.09001 * 109.52424 * 178.60928 * 5 3 2
33 33 H 1.08994 * 109.58750 * 294.84781 * 6 5 3
34 34 H 1.09002 * 109.70683 * 174.48852 * 6 5 3
35 35 H 0.97001 * 120.00141 * 355.11365 * 10 8 7
36 36 H 1.08996 * 109.47124 * 300.00248 * 11 10 8
37 37 H 1.09004 * 109.46932 * 60.00403 * 11 10 8
38 38 H 1.08000 * 119.92559 * 0.02562 * 13 12 11
39 39 H 1.08003 * 119.96036 * 180.25596 * 14 13 12
40 40 H 1.08002 * 120.03601 * 179.76902 * 15 14 13
41 41 H 0.97010 * 119.99751 * 180.02562 * 21 20 18
42 42 H 1.08001 * 120.03455 * 359.95347 * 26 12 11
43 43 H 1.08995 * 109.58463 * 173.14514 * 27 7 6
44 44 H 1.09002 * 109.58483 * 293.56858 * 27 7 6
45 45 H 1.09002 * 109.55959 * 185.55225 * 28 27 7
46 46 H 1.08996 * 109.38961 * 65.51465 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 8 3.1225 -0.9417 -0.9628
5 6 3.1552 1.3984 -0.3594
6 6 2.6141 2.4110 0.6549
7 7 2.9771 1.9657 2.0073
8 6 3.6304 2.7905 2.8495
9 8 4.0108 2.3802 3.9291
10 7 3.8621 4.0700 2.4952
11 6 4.4704 4.9966 3.4531
12 6 4.6210 6.3530 2.8136
13 6 5.7815 6.6699 2.1307
14 6 5.9214 7.9115 1.5385
15 6 4.9065 8.8433 1.6364
16 6 3.7425 8.5301 2.3258
17 8 2.7436 9.4439 2.4242
18 6 2.8965 10.5944 1.7379
19 1 3.8184 10.7900 1.2105
20 6 1.8702 11.5262 1.7092
21 7 2.0196 12.6488 1.0399
22 14 0.2759 11.1881 2.6220
23 1 0.3782 11.7118 4.0078
24 1 -0.8479 11.8596 1.9209
25 1 0.0297 9.7242 2.6630
26 6 3.6028 7.2801 2.9151
27 6 2.6197 0.6022 2.4218
28 6 3.1558 -0.3882 1.3896
29 1 -1.0499 0.0000 -0.0003
30 1 2.8378 -1.8510 -0.7975
31 1 2.8111 1.6652 -1.3586
32 1 4.2449 1.4064 -0.3356
33 1 1.5292 2.4705 0.5687
34 1 3.0502 3.3915 0.4638
35 1 3.6224 4.3784 1.6074
36 1 3.8338 5.0785 4.3340
37 1 5.4514 4.6231 3.7471
38 1 6.5780 5.9444 2.0564
39 1 6.8270 8.1545 1.0025
40 1 5.0179 9.8143 1.1769
41 1 1.3017 13.3010 1.0202
42 1 2.6986 7.0334 3.4516
43 1 3.0615 0.3886 3.3950
44 1 1.5352 0.5112 2.4826
45 1 2.8121 -1.3930 1.6352
46 1 4.2455 -0.3643 1.3971
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001350918435.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:22
Heat of formation + Delta-G solvation = -33.682723 kcal
Electronic energy + Delta-G solvation = -29175.467479 eV
Core-core repulsion = 25032.064401 eV
Total energy + Delta-G solvation = -4143.403078 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.72265 -40.93099 -39.84480 -38.59046 -36.89692 -35.88740 -34.45673 -33.96147
-32.74543 -32.12317 -31.61862 -30.88948 -27.57166 -26.98817 -25.81936 -24.44256
-23.34636 -22.96043 -22.27571 -21.13650 -19.96142 -19.55035 -19.21333 -18.68745
-17.58123 -17.21683 -16.95027 -16.82587 -16.50011 -16.05899 -15.96488 -15.86483
-15.68588 -15.47774 -15.21821 -15.03918 -14.75069 -14.42346 -14.23522 -14.14348
-13.83702 -13.54418 -13.39749 -13.09572 -13.00059 -12.63610 -12.62310 -12.45334
-12.42296 -12.35960 -12.11282 -11.94139 -11.62523 -11.51917 -11.37562 -11.28171
-10.92222 -10.90671 -10.28181 -9.80648 -9.60779 -9.12478 -8.50120 -6.22825
0.32964 0.64839 1.31890 1.35256 1.51034 1.62816 1.74303 1.80333
2.06268 2.27295 2.69074 2.87992 3.05429 3.15576 3.17580 3.25275
3.64667 3.70307 3.77214 3.94024 4.06547 4.19879 4.28181 4.34773
4.41098 4.43167 4.47762 4.51547 4.64545 4.70232 4.72858 4.76031
4.84618 4.92386 4.93523 4.99330 5.19067 5.20379 5.35826 5.40256
5.44315 5.63476 5.69269 5.74663 5.85148 5.89133 6.19319 6.60400
6.69082 6.84428 6.86302 7.46984 7.58367 8.61262
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.013103 B = 0.002351 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2136.436711 B =11906.734561 C =12754.938038
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.245 4.245
3 C 0.249 3.751
4 O -0.559 6.559
5 C -0.116 4.116
6 C 0.114 3.886
7 N -0.626 5.626
8 C 0.707 3.293
9 O -0.628 6.628
10 N -0.732 5.732
11 C 0.192 3.808
12 C -0.061 4.061
13 C -0.158 4.158
14 C -0.073 4.073
15 C -0.227 4.227
16 C 0.120 3.880
17 O -0.245 6.245
18 C -0.397 4.397
19 H 0.084 0.916
20 C 0.011 3.989
21 N -0.922 5.922
22 Si 0.968 3.032
23 H -0.268 1.268
24 H -0.269 1.269
25 H -0.262 1.262
26 C -0.168 4.168
27 C 0.131 3.869
28 C -0.145 4.145
29 H 0.242 0.758
30 H 0.396 0.604
31 H 0.092 0.908
32 H 0.084 0.916
33 H 0.077 0.923
34 H 0.095 0.905
35 H 0.406 0.594
36 H 0.067 0.933
37 H 0.084 0.916
38 H 0.148 0.852
39 H 0.144 0.856
40 H 0.110 0.890
41 H 0.284 0.716
42 H 0.122 0.878
43 H 0.086 0.914
44 H 0.073 0.927
45 H 0.102 0.898
46 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.477 -28.419 -2.478 28.531
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.245 4.245
3 C 0.209 3.791
4 O -0.368 6.368
5 C -0.155 4.155
6 C -0.009 4.009
7 N -0.363 5.363
8 C 0.408 3.592
9 O -0.510 6.510
10 N -0.389 5.389
11 C 0.069 3.931
12 C -0.061 4.061
13 C -0.176 4.176
14 C -0.091 4.091
15 C -0.247 4.247
16 C 0.071 3.929
17 O -0.152 6.152
18 C -0.474 4.474
19 H 0.101 0.899
20 C -0.187 4.187
21 N -0.563 5.563
22 Si 0.790 3.210
23 H -0.193 1.193
24 H -0.193 1.193
25 H -0.186 1.186
26 C -0.188 4.188
27 C 0.008 3.992
28 C -0.184 4.184
29 H 0.259 0.741
30 H 0.246 0.754
31 H 0.110 0.890
32 H 0.102 0.898
33 H 0.096 0.904
34 H 0.113 0.887
35 H 0.244 0.756
36 H 0.085 0.915
37 H 0.102 0.898
38 H 0.166 0.834
39 H 0.162 0.838
40 H 0.128 0.872
41 H 0.094 0.906
42 H 0.140 0.860
43 H 0.104 0.896
44 H 0.091 0.909
45 H 0.120 0.880
46 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 0.728 -27.984 -1.876 28.056
hybrid contribution -1.112 0.473 -0.140 1.217
sum -0.384 -27.510 -2.016 27.587
Atomic orbital electron populations
1.25773 0.96759 0.97518 0.98321 1.23942 0.95356 1.02987 1.02221
1.17910 0.82067 0.90536 0.88631 1.86590 1.76229 1.21769 1.52195
1.21839 1.02167 0.91513 0.99949 1.21728 1.01085 0.98001 0.80070
1.47295 1.60193 1.14341 1.14466 1.15919 0.78557 0.81217 0.83485
1.90879 1.58902 1.76488 1.24693 1.45284 1.66933 1.08420 1.18279
1.19903 0.99123 0.83727 0.90360 1.19457 0.93740 0.94270 0.98679
1.21032 0.98237 0.97342 1.01032 1.21136 0.97667 0.92785 0.97537
1.21404 0.95528 1.01742 1.06001 1.19559 0.88366 0.89656 0.95324
1.83520 1.41396 1.25946 1.64385 1.20705 1.03786 0.92922 1.29952
0.89860 1.25239 1.01986 0.94118 0.97384 1.69725 1.35768 1.08914
1.41909 0.85252 0.77814 0.79251 0.78635 1.19306 1.19341 1.18641
1.20267 1.01219 0.91214 1.06082 1.21367 1.00045 0.79051 0.98708
1.22475 1.02264 1.00417 0.93235 0.74132 0.75377 0.88987 0.89780
0.90427 0.88664 0.75612 0.91482 0.89776 0.83402 0.83824 0.87168
0.90597 0.85966 0.89603 0.90906 0.87966 0.90118
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.94 19.25 74.32 1.43 -0.51 16
2 C -0.24 -3.41 9.68 31.12 0.30 -3.10 16
3 C 0.25 3.39 1.09 -12.58 -0.01 3.37 16
4 O -0.56 -7.52 12.95 -148.98 -1.93 -9.45 16
5 C -0.12 -1.66 5.25 30.67 0.16 -1.50 16
6 C 0.11 1.74 6.04 86.36 0.52 2.26 16
7 N -0.63 -12.22 2.98 -837.73 -2.50 -14.71 16
8 C 0.71 18.04 8.29 179.06 1.49 19.52 16
9 O -0.63 -20.58 15.77 -4.00 -0.06 -20.65 16
10 N -0.73 -16.82 5.46 -482.29 -2.63 -19.46 16
11 C 0.19 4.80 5.80 85.63 0.50 5.29 16
12 C -0.06 -1.73 5.25 -19.88 -0.10 -1.84 16
13 C -0.16 -4.20 9.70 22.30 0.22 -3.98 16
14 C -0.07 -2.27 10.04 22.25 0.22 -2.04 16
15 C -0.23 -9.31 9.17 22.39 0.21 -9.11 16
16 C 0.12 5.31 6.65 22.58 0.15 5.46 16
17 O -0.24 -12.86 8.59 -22.74 -0.20 -13.06 16
18 C -0.40 -22.77 9.95 67.92 0.68 -22.09 16
19 H 0.08 4.97 5.44 -2.91 -0.02 4.96 16
20 C 0.01 0.64 5.49 84.83 0.47 1.11 16
21 N -0.92 -54.22 13.96 21.61 0.30 -53.92 16
22 Si 0.97 44.71 28.62 68.60 1.96 46.67 16
23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16
24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
25 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16
26 C -0.17 -6.05 9.65 22.39 0.22 -5.83 16
27 C 0.13 2.22 6.07 86.22 0.52 2.74 16
28 C -0.15 -1.83 5.21 30.53 0.16 -1.67 16
29 H 0.24 1.26 7.80 -4.42 -0.03 1.23 16
30 H 0.40 2.36 9.03 -74.05 -0.67 1.69 16
31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16
32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
33 H 0.08 1.17 7.38 -2.39 -0.02 1.15 16
34 H 0.10 1.31 5.65 -2.39 -0.01 1.30 16
35 H 0.41 8.12 5.95 -92.71 -0.55 7.57 16
36 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16
37 H 0.08 1.99 8.08 -2.38 -0.02 1.97 16
38 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16
39 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16
40 H 0.11 5.01 5.64 -2.91 -0.02 5.00 16
41 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16
42 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16
43 H 0.09 1.73 6.99 -2.39 -0.02 1.71 16
44 H 0.07 1.14 7.38 -2.39 -0.02 1.13 16
45 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16
46 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
Total: -1.00 -72.74 384.68 1.88 -70.86
By element:
Atomic # 1 Polarization: 25.82 SS G_CDS: -0.19 Total: 25.64 kcal
Atomic # 6 Polarization: -19.04 SS G_CDS: 7.11 Total: -11.93 kcal
Atomic # 7 Polarization: -83.26 SS G_CDS: -4.83 Total: -88.09 kcal
Atomic # 8 Polarization: -40.96 SS G_CDS: -2.19 Total: -43.15 kcal
Atomic # 14 Polarization: 44.71 SS G_CDS: 1.96 Total: 46.67 kcal
Total: -72.74 1.88 -70.86 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001350918435.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.180 kcal
(2) G-P(sol) polarization free energy of solvation -72.738 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.683 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds