Wall clock time and date at job start Sat Apr 11 2020 07:06:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09005 * 109.70566 * 2 1
4 4 C 1.53715 * 109.74622 * 120.77003 * 2 1 3
5 5 O 1.42966 * 109.14437 * 172.16754 * 4 2 1
6 6 C 1.42965 * 114.16390 * 297.28624 * 5 4 2
7 7 H 1.08997 * 109.50950 * 302.66194 * 6 5 4
8 8 C 1.53001 * 109.51112 * 182.50985 * 6 5 4
9 9 O 1.42895 * 109.47351 * 64.50249 * 8 6 5
10 10 C 1.53293 * 109.22224 * 62.58041 * 6 5 4
11 11 N 1.47147 * 108.38846 * 307.69969 * 10 6 5
12 12 C 1.34773 * 120.98253 * 230.50985 * 11 10 6
13 13 O 1.21664 * 119.99930 * 188.53164 * 12 11 10
14 14 C 1.46889 * 120.00079 * 8.53444 * 12 11 10
15 15 C 1.36127 * 125.43497 * 27.13057 * 14 12 11
16 16 C 1.41697 * 107.75064 * 179.97438 * 15 14 12
17 17 C 1.40020 * 133.35425 * 179.97438 * 16 15 14
18 18 C 1.36577 * 119.83442 * 180.02562 * 17 16 15
19 19 C 1.38850 * 120.59879 * 359.97438 * 18 17 16
20 20 C 1.37848 * 120.63371 * 0.02562 * 19 18 17
21 21 C 1.39084 * 119.81667 * 359.97426 * 20 19 18
22 22 N 1.37834 * 133.16653 * 179.97438 * 21 20 19
23 23 C 1.36891 * 125.62307 * 359.96590 * 22 21 20
24 24 H 1.07997 * 119.99880 * 136.41083 * 23 22 21
25 25 C 1.39011 * 119.99765 * 316.41882 * 23 22 21
26 26 N 1.31343 * 119.99958 * 0.93460 * 25 23 22
27 27 Si 1.86804 * 119.99796 * 180.93919 * 25 23 22
28 28 H 1.48506 * 109.46912 * 94.98774 * 27 25 23
29 29 H 1.48498 * 109.47063 * 214.98670 * 27 25 23
30 30 H 1.48500 * 109.47203 * 334.99082 * 27 25 23
31 31 H 1.08993 * 109.47038 * 173.67562 * 1 2 3
32 32 H 1.09004 * 109.47005 * 293.67198 * 1 2 3
33 33 H 1.08994 * 109.47531 * 53.66805 * 1 2 3
34 34 H 1.08992 * 109.65600 * 52.20008 * 4 2 1
35 35 H 1.09007 * 109.48342 * 292.02632 * 4 2 1
36 36 H 1.08998 * 109.47133 * 184.50471 * 8 6 5
37 37 H 1.09008 * 109.46700 * 304.50491 * 8 6 5
38 38 H 0.96696 * 114.00170 * 179.97438 * 9 8 6
39 39 H 1.08996 * 109.68501 * 187.96897 * 10 6 5
40 40 H 1.09007 * 109.70791 * 67.44164 * 10 6 5
41 41 H 1.08001 * 126.12506 * 359.93358 * 15 14 12
42 42 H 1.08007 * 120.08127 * 359.97438 * 17 16 15
43 43 H 1.08003 * 119.69843 * 180.28017 * 18 17 16
44 44 H 1.07999 * 119.68274 * 179.97438 * 19 18 17
45 45 H 1.08001 * 120.08887 * 179.97438 * 20 19 18
46 46 H 0.97003 * 119.99998 * 185.01758 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8976 1.0262 0.0000
4 6 2.0494 -0.7402 1.2431
5 8 3.4671 -0.8928 1.1397
6 6 3.8908 -1.6867 0.0288
7 1 3.4291 -2.6723 0.0886
8 6 5.4136 -1.8320 0.0557
9 8 5.8022 -2.5595 1.2226
10 6 3.4647 -1.0001 -1.2739
11 7 2.0256 -0.7040 -1.1934
12 6 1.1870 -1.0619 -2.1859
13 8 0.0335 -0.6752 -2.1768
14 6 1.6657 -1.9190 -3.2785
15 6 2.6823 -2.8198 -3.1876
16 6 2.8271 -3.4371 -4.4548
17 6 3.6907 -4.4210 -4.9517
18 6 3.5868 -4.8219 -6.2531
19 6 2.6308 -4.2628 -7.0907
20 6 1.7695 -3.2927 -6.6246
21 6 1.8561 -2.8682 -5.3030
22 7 1.1552 -1.9405 -4.5627
23 6 0.1245 -1.1666 -5.0239
24 1 -0.7611 -1.0315 -4.4207
25 6 0.2178 -0.5547 -6.2686
26 7 1.2870 -0.7340 -7.0100
27 14 -1.1776 0.5226 -6.8866
28 1 -0.8882 1.9424 -6.5611
29 1 -1.3075 0.3686 -8.3579
30 1 -2.4462 0.1134 -6.2321
31 1 -0.3633 -1.0213 -0.1132
32 1 -0.3633 0.4126 0.9412
33 1 -0.3634 0.6088 -0.8278
34 1 1.5812 -1.7223 1.3073
35 1 1.8095 -0.1633 2.1364
36 1 5.7432 -2.3689 -0.8338
37 1 5.8726 -0.8434 0.0743
38 1 6.7568 -2.6900 1.3050
39 1 3.6566 -1.6626 -2.1179
40 1 4.0238 -0.0730 -1.4006
41 1 3.2730 -3.0265 -2.3074
42 1 4.4376 -4.8611 -4.3075
43 1 4.2510 -5.5841 -6.6329
44 1 2.5620 -4.5906 -8.1175
45 1 1.0295 -2.8636 -7.2839
46 1 1.3848 -0.2503 -7.8451
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000611212716.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:12
Heat of formation + Delta-G solvation = -52.647802 kcal
Electronic energy + Delta-G solvation = -31535.502482 eV
Core-core repulsion = 27391.277017 eV
Total energy + Delta-G solvation = -4144.225465 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-42.44976 -41.20557 -39.43706 -37.62273 -37.35808 -36.08402 -35.43219 -34.24189
-32.38366 -31.12266 -30.66157 -29.42865 -27.52673 -26.83656 -26.22065 -24.80555
-23.24594 -22.62256 -22.07815 -21.70884 -20.34249 -19.44923 -18.42474 -17.96762
-17.65316 -17.42837 -17.14155 -16.89775 -16.56112 -16.18554 -15.89614 -15.77159
-15.60625 -15.38569 -14.92904 -14.80403 -14.53440 -14.44369 -14.08854 -13.83770
-13.71725 -13.54724 -13.45211 -13.29381 -13.18576 -12.82503 -12.62774 -12.37363
-12.30390 -12.16463 -12.06370 -11.91740 -11.72052 -11.38577 -11.25435 -11.00586
-10.88152 -10.40312 -10.13813 -9.59039 -8.94261 -8.58423 -8.28410 -6.46160
0.17957 1.12859 1.27894 1.33166 1.41429 1.42700 1.65695 2.09878
2.41230 2.66262 2.80514 2.97214 3.20796 3.40182 3.63180 3.68924
3.95611 4.01689 4.07723 4.16566 4.25419 4.29842 4.38368 4.46114
4.47277 4.51893 4.57759 4.62502 4.73137 4.74372 4.78460 4.86792
4.94288 5.04280 5.04910 5.10259 5.21096 5.30441 5.40240 5.49914
5.58853 5.78653 5.94893 6.03101 6.07986 6.17303 6.27984 6.42900
6.60354 6.93828 6.98255 7.20915 7.46595 8.36301
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.010497 B = 0.004717 C = 0.003445
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2666.662860 B = 5934.795844 C = 8126.840371
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.109 3.891
3 H 0.087 0.913
4 C 0.059 3.941
5 O -0.378 6.378
6 C 0.081 3.919
7 H 0.062 0.938
8 C 0.088 3.912
9 O -0.586 6.586
10 C 0.049 3.951
11 N -0.605 5.605
12 C 0.590 3.410
13 O -0.557 6.557
14 C -0.046 4.046
15 C -0.198 4.198
16 C -0.146 4.146
17 C -0.092 4.092
18 C -0.150 4.150
19 C -0.147 4.147
20 C -0.074 4.074
21 C 0.064 3.936
22 N -0.267 5.267
23 C -0.367 4.367
24 H 0.093 0.907
25 C 0.013 3.987
26 N -0.856 5.856
27 Si 0.996 3.004
28 H -0.269 1.269
29 H -0.261 1.261
30 H -0.266 1.266
31 H 0.039 0.961
32 H 0.082 0.918
33 H 0.057 0.943
34 H 0.051 0.949
35 H 0.135 0.865
36 H 0.088 0.912
37 H 0.067 0.933
38 H 0.400 0.600
39 H 0.131 0.869
40 H 0.082 0.918
41 H 0.171 0.829
42 H 0.143 0.857
43 H 0.146 0.854
44 H 0.129 0.871
45 H 0.099 0.901
46 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.224 -1.911 10.451 14.069
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.007 3.993
3 H 0.105 0.895
4 C -0.018 4.018
5 O -0.297 6.297
6 C 0.022 3.978
7 H 0.080 0.920
8 C 0.010 3.990
9 O -0.395 6.395
10 C -0.073 4.073
11 N -0.339 5.339
12 C 0.381 3.619
13 O -0.436 6.436
14 C -0.162 4.162
15 C -0.225 4.225
16 C -0.151 4.151
17 C -0.110 4.110
18 C -0.169 4.169
19 C -0.168 4.168
20 C -0.094 4.094
21 C -0.050 4.050
22 N 0.070 4.930
23 C -0.495 4.495
24 H 0.111 0.889
25 C -0.194 4.194
26 N -0.487 5.487
27 Si 0.817 3.183
28 H -0.195 1.195
29 H -0.185 1.185
30 H -0.190 1.190
31 H 0.058 0.942
32 H 0.101 0.899
33 H 0.076 0.924
34 H 0.070 0.930
35 H 0.152 0.848
36 H 0.106 0.894
37 H 0.085 0.915
38 H 0.251 0.749
39 H 0.148 0.852
40 H 0.100 0.900
41 H 0.188 0.812
42 H 0.161 0.839
43 H 0.163 0.837
44 H 0.147 0.853
45 H 0.117 0.883
46 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 7.854 -1.359 10.356 13.068
hybrid contribution -0.595 0.817 -0.992 1.416
sum 7.259 -0.542 9.364 11.860
Atomic orbital electron populations
1.21954 0.92550 1.02238 1.02159 1.22240 0.96222 0.96501 0.84321
0.89540 1.23223 0.80949 1.00220 0.97419 1.87971 1.22098 1.71922
1.47680 1.22504 0.96189 0.93826 0.85241 0.92049 1.22092 0.90831
0.97018 0.89025 1.86457 1.30624 1.77552 1.44836 1.23203 0.79869
1.03354 1.00874 1.47796 1.08290 1.58608 1.19226 1.17310 0.84731
0.78880 0.81004 1.90743 1.19715 1.56045 1.77109 1.20257 1.01148
1.06121 0.88682 1.20842 1.01037 1.02661 0.97928 1.18448 1.00469
1.02064 0.94086 1.20454 0.98480 0.95998 0.96108 1.20751 1.00090
1.02243 0.93816 1.20984 0.97254 0.98323 1.00208 1.20309 1.00575
0.96098 0.92424 1.18790 0.98140 0.93258 0.94786 1.40070 1.22590
1.24058 1.06265 1.19962 0.97137 1.29111 1.03256 0.88929 1.26486
1.00328 0.97309 0.95305 1.70065 1.27938 1.37495 1.13220 0.84886
0.77474 0.77857 0.78060 1.19452 1.18521 1.18982 0.94164 0.89915
0.92360 0.93029 0.84778 0.89361 0.91514 0.74922 0.85199 0.89960
0.81167 0.83885 0.83674 0.85261 0.88335 0.90686
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.05 7.66 71.98 0.55 -3.50 16
2 C 0.11 3.15 3.70 45.11 0.17 3.31 16
3 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16
4 C 0.06 1.40 6.31 72.22 0.46 1.86 16
5 O -0.38 -9.83 10.34 -143.96 -1.49 -11.32 16
6 C 0.08 1.98 2.94 30.69 0.09 2.07 16
7 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
8 C 0.09 1.60 6.72 71.98 0.48 2.09 16
9 O -0.59 -11.05 13.62 -143.96 -1.96 -13.01 16
10 C 0.05 1.38 5.27 86.35 0.46 1.84 16
11 N -0.60 -20.99 3.01 -797.19 -2.40 -23.39 16
12 C 0.59 26.52 7.22 86.51 0.62 27.14 16
13 O -0.56 -27.89 11.30 -4.23 -0.05 -27.93 16
14 C -0.05 -2.20 6.39 39.91 0.25 -1.95 16
15 C -0.20 -8.12 8.54 22.63 0.19 -7.93 16
16 C -0.15 -6.45 6.16 -21.33 -0.13 -6.58 16
17 C -0.09 -3.28 10.06 22.31 0.22 -3.06 16
18 C -0.15 -5.14 9.97 22.03 0.22 -4.92 16
19 C -0.15 -5.81 10.02 22.32 0.22 -5.59 16
20 C -0.07 -3.62 8.39 22.38 0.19 -3.43 16
21 C 0.06 3.30 6.05 39.06 0.24 3.54 16
22 N -0.27 -14.67 2.84 -331.34 -0.94 -15.61 16
23 C -0.37 -20.93 9.03 84.09 0.76 -20.17 16
24 H 0.09 5.53 6.93 -2.91 -0.02 5.51 16
25 C 0.01 0.71 5.07 84.95 0.43 1.14 16
26 N -0.86 -46.05 9.84 21.67 0.21 -45.84 16
27 Si 1.00 42.24 29.56 68.60 2.03 44.27 16
28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16
29 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16
30 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
31 H 0.04 1.40 7.20 -2.39 -0.02 1.38 16
32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
33 H 0.06 2.17 6.40 -2.39 -0.02 2.16 16
34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16
35 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16
36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
37 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16
38 H 0.40 3.37 9.12 -74.06 -0.68 2.69 16
39 H 0.13 3.91 3.24 -2.39 -0.01 3.90 16
40 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16
41 H 0.17 5.48 5.90 -2.91 -0.02 5.47 16
42 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16
43 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16
44 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16
45 H 0.10 5.18 6.33 -2.91 -0.02 5.16 16
46 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16
Total: -1.00 -73.62 364.07 1.18 -72.44
By element:
Atomic # 1 Polarization: 34.18 SS G_CDS: 0.35 Total: 34.53 kcal
Atomic # 6 Polarization: -19.56 SS G_CDS: 5.43 Total: -14.13 kcal
Atomic # 7 Polarization: -81.72 SS G_CDS: -3.13 Total: -84.85 kcal
Atomic # 8 Polarization: -48.76 SS G_CDS: -3.50 Total: -52.26 kcal
Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal
Total: -73.62 1.18 -72.44 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000611212716.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.792 kcal
(2) G-P(sol) polarization free energy of solvation -73.617 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.648 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds