Wall clock time and date at job start Sat Apr 11 2020 07:06:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09001 * 109.47125 * 2 1
4 4 C 1.50701 * 109.46868 * 120.00007 * 2 1 3
5 5 H 1.08003 * 120.00331 * 120.00503 * 4 2 1
6 6 C 1.37875 * 120.00023 * 299.99912 * 4 2 1
7 7 N 1.31511 * 120.00074 * 0.02562 * 6 4 2
8 8 Si 1.86806 * 120.00015 * 180.02562 * 6 4 2
9 9 H 1.48500 * 109.47024 * 179.97438 * 8 6 4
10 10 H 1.48492 * 109.46958 * 299.99692 * 8 6 4
11 11 H 1.48499 * 109.47138 * 60.00294 * 8 6 4
12 12 N 1.46501 * 109.47251 * 239.99885 * 2 1 3
13 13 C 1.34769 * 119.99912 * 84.99644 * 12 2 1
14 14 O 1.21363 * 120.00451 * 0.02562 * 13 12 2
15 15 C 1.49330 * 120.00136 * 179.97438 * 13 12 2
16 16 O 1.21399 * 119.99796 * 0.02562 * 15 13 12
17 17 N 1.34776 * 120.00463 * 180.02562 * 15 13 12
18 18 C 1.39897 * 120.00352 * 175.53752 * 17 15 13
19 19 C 1.39003 * 120.16246 * 34.66125 * 18 17 15
20 20 C 1.38282 * 120.44713 * 179.97438 * 19 18 17
21 21 C 1.38202 * 120.39036 * 0.02562 * 20 19 18
22 22 C 1.39100 * 119.68792 * 359.97438 * 21 20 19
23 23 C 1.38868 * 120.16896 * 214.37927 * 18 17 15
24 24 O 1.35797 * 121.41434 * 0.59866 * 23 18 17
25 25 C 1.42822 * 117.22938 * 146.05793 * 24 23 18
26 26 C 1.53000 * 109.25374 * 287.47305 * 25 24 23
27 27 C 1.52998 * 109.22917 * 168.01720 * 25 24 23
28 28 C 1.50587 * 110.57388 * 47.75038 * 25 24 23
29 29 C 1.33116 * 120.03885 * 328.78032 * 28 25 24
30 30 H 1.09002 * 109.47260 * 299.99668 * 1 2 3
31 31 H 1.09003 * 109.46916 * 60.00203 * 1 2 3
32 32 H 1.09001 * 109.47125 * 179.97438 * 1 2 3
33 33 H 0.97009 * 120.00320 * 179.97438 * 7 6 4
34 34 H 0.96999 * 119.99996 * 265.00212 * 12 2 1
35 35 H 0.96999 * 119.99933 * 355.54974 * 17 15 13
36 36 H 1.08004 * 119.77265 * 359.97149 * 19 18 17
37 37 H 1.07999 * 119.80572 * 180.02562 * 20 19 18
38 38 H 1.08001 * 120.15465 * 180.02562 * 21 20 19
39 39 H 1.09003 * 109.46998 * 181.08871 * 26 25 24
40 40 H 1.09001 * 109.46890 * 301.08523 * 26 25 24
41 41 H 1.08996 * 109.47366 * 61.08762 * 26 25 24
42 42 H 1.08997 * 109.46872 * 298.93453 * 27 25 24
43 43 H 1.09000 * 109.47000 * 58.92843 * 27 25 24
44 44 H 1.08991 * 109.47160 * 178.93112 * 27 25 24
45 45 H 1.08004 * 119.98122 * 148.80483 * 28 25 24
46 46 H 1.08008 * 120.96202 * 180.57193 * 29 28 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6533 -1.5885 1.1315
6 6 1.6992 -0.2394 2.4827
7 7 0.9427 0.8296 2.6034
8 14 2.3224 -1.1196 4.0080
9 1 1.8278 -0.4192 5.2205
10 1 1.8279 -2.5197 4.0082
11 1 3.8074 -1.1190 4.0079
12 7 2.0184 -0.6906 -1.1961
13 6 2.1470 -0.0183 -2.3571
14 8 1.8588 1.1593 -2.4116
15 6 2.6454 -0.7221 -3.5762
16 8 2.9342 -1.9000 -3.5217
17 7 2.7746 -0.0497 -4.7371
18 6 3.3287 -0.6832 -5.8545
19 6 3.0997 -2.0364 -6.0754
20 6 3.6442 -2.6684 -7.1782
21 6 4.4236 -1.9622 -8.0748
22 6 4.6598 -0.6076 -7.8644
23 6 4.1055 0.0378 -6.7518
24 8 4.3571 1.3595 -6.5673
25 6 5.6306 1.8476 -6.9913
26 6 6.7087 1.3487 -6.0270
27 6 5.6130 3.3774 -6.9804
28 6 5.9463 1.3644 -8.3821
29 6 5.4872 0.1864 -8.7985
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 0.7080 1.1609 3.4844
34 1 2.2491 -1.6318 -1.1526
35 1 2.4834 0.8736 -4.7978
36 1 2.4925 -2.5979 -5.3808
37 1 3.4592 -3.7201 -7.3400
38 1 4.8466 -2.4595 -8.9351
39 1 7.6798 1.7352 -6.3363
40 1 6.4835 1.6965 -5.0188
41 1 6.7308 0.2590 -6.0389
42 1 4.8522 3.7369 -7.6733
43 1 5.3847 3.7310 -5.9750
44 1 6.5892 3.7542 -7.2852
45 1 6.5460 1.9738 -9.0421
46 1 5.7121 -0.1788 -9.7898
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000873821862.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:41
Heat of formation + Delta-G solvation = -62.452612 kcal
Electronic energy + Delta-G solvation = -29863.110115 eV
Core-core repulsion = 25718.459482 eV
Total energy + Delta-G solvation = -4144.650634 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.38773 -40.26351 -38.51102 -37.55031 -35.59726 -34.95963 -34.08176 -32.80380
-32.40423 -29.69918 -29.06709 -28.86197 -27.61052 -25.35758 -24.86344 -23.80217
-22.67565 -22.24625 -20.79324 -19.73926 -19.07395 -18.69544 -17.88813 -16.78060
-16.60265 -16.12575 -15.75351 -15.56805 -15.33584 -15.10822 -14.93177 -14.61104
-14.28760 -14.18093 -13.63299 -13.55512 -13.22054 -13.07787 -12.95005 -12.66654
-12.51814 -12.47656 -12.11541 -12.01821 -11.81869 -11.79342 -11.31734 -11.21269
-11.09271 -10.99998 -10.82462 -10.75205 -10.59625 -10.37144 -10.27391 -10.04657
-9.15656 -9.05403 -8.62291 -8.27447 -8.13703 -8.02034 -6.17310 -4.27062
0.61263 1.01442 1.84162 2.10889 2.67245 3.01291 3.25391 3.30079
3.32406 3.57055 3.77558 4.07628 4.22643 4.33484 4.36911 4.52614
4.63256 4.68500 4.92099 5.03491 5.10685 5.15622 5.16433 5.26097
5.28429 5.37044 5.47181 5.48482 5.65537 5.77432 5.82780 5.88894
5.96001 6.09539 6.13448 6.35276 6.42386 6.64907 6.72171 6.85032
7.02022 7.07849 7.22070 7.23941 7.41753 7.61735 7.78218 7.93582
8.05158 8.44254 8.61433 8.85209 9.39929 10.88686
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.016623 B = 0.002500 C = 0.002350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1684.049982 B =11198.002941 C =11911.132571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.262 3.738
3 H 0.054 0.946
4 C -0.537 4.537
5 H 0.064 0.936
6 C 0.068 3.932
7 N -0.883 5.883
8 Si 0.905 3.095
9 H -0.285 1.285
10 H -0.275 1.275
11 H -0.275 1.275
12 N -0.668 5.668
13 C 0.495 3.505
14 O -0.533 6.533
15 C 0.508 3.492
16 O -0.509 6.509
17 N -0.642 5.642
18 C 0.128 3.872
19 C -0.088 4.088
20 C -0.129 4.129
21 C -0.089 4.089
22 C -0.120 4.120
23 C 0.111 3.889
24 O -0.304 6.304
25 C 0.149 3.851
26 C -0.173 4.173
27 C -0.137 4.137
28 C -0.185 4.185
29 C -0.092 4.092
30 H 0.094 0.906
31 H 0.016 0.984
32 H 0.030 0.970
33 H 0.266 0.734
34 H 0.402 0.598
35 H 0.426 0.574
36 H 0.149 0.851
37 H 0.131 0.869
38 H 0.129 0.871
39 H 0.073 0.927
40 H 0.071 0.929
41 H 0.060 0.940
42 H 0.067 0.933
43 H 0.073 0.927
44 H 0.079 0.921
45 H 0.131 0.869
46 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.294 -0.859 -23.741 25.509
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.161 3.839
3 H 0.072 0.928
4 C -0.576 4.576
5 H 0.082 0.918
6 C -0.136 4.136
7 N -0.521 5.521
8 Si 0.732 3.268
9 H -0.211 1.211
10 H -0.200 1.200
11 H -0.201 1.201
12 N -0.317 5.317
13 C 0.274 3.726
14 O -0.412 6.412
15 C 0.292 3.708
16 O -0.384 6.384
17 N -0.289 5.289
18 C 0.033 3.967
19 C -0.108 4.108
20 C -0.148 4.148
21 C -0.107 4.107
22 C -0.122 4.122
23 C 0.064 3.936
24 O -0.219 6.219
25 C 0.112 3.888
26 C -0.230 4.230
27 C -0.194 4.194
28 C -0.203 4.203
29 C -0.110 4.110
30 H 0.113 0.887
31 H 0.036 0.964
32 H 0.049 0.951
33 H 0.076 0.924
34 H 0.237 0.763
35 H 0.265 0.735
36 H 0.167 0.833
37 H 0.149 0.851
38 H 0.146 0.854
39 H 0.092 0.908
40 H 0.090 0.910
41 H 0.079 0.921
42 H 0.086 0.914
43 H 0.092 0.908
44 H 0.098 0.902
45 H 0.149 0.851
46 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 9.064 -0.542 -23.359 25.062
hybrid contribution 0.462 -0.563 0.593 0.939
sum 9.526 -1.104 -22.767 24.704
Atomic orbital electron populations
1.22102 0.97816 0.99569 1.01230 1.18971 0.91448 0.94130 0.79307
0.92804 1.21160 1.32862 1.13506 0.90049 0.91791 1.24873 0.94682
0.94924 0.99075 1.69882 1.35623 1.22366 1.24187 0.86451 0.79229
0.79619 0.81508 1.21079 1.20034 1.20088 1.46491 1.61384 1.14513
1.09304 1.19626 0.81184 0.87301 0.84512 1.90738 1.50589 1.15176
1.84660 1.20960 0.78150 0.87122 0.84610 1.90709 1.47466 1.15264
1.84935 1.43055 1.60061 1.17593 1.08212 1.17171 1.00054 0.92090
0.87356 1.21361 0.99363 0.92557 0.97545 1.20978 0.98918 1.00335
0.94554 1.20982 0.98067 0.92333 0.99350 1.18915 1.03047 0.94776
0.95446 1.18616 0.97281 0.83999 0.93750 1.86020 1.35551 1.20260
1.80063 1.20656 0.81846 0.95046 0.91285 1.22415 0.98474 1.02188
0.99967 1.21815 1.02962 0.90717 1.03952 1.23888 1.01757 0.97124
0.97508 1.21744 0.96673 0.94141 0.98472 0.88710 0.96447 0.95085
0.92383 0.76338 0.73547 0.83320 0.85125 0.85357 0.90805 0.90973
0.92054 0.91378 0.90840 0.90248 0.85120 0.84921
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16
2 C 0.26 6.62 2.56 -69.08 -0.18 6.45 16
3 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16
4 C -0.54 -14.23 8.73 -34.44 -0.30 -14.53 16
5 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16
6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16
7 N -0.88 -24.49 11.32 55.43 0.63 -23.87 16
8 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16
9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16
10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16
12 N -0.67 -14.45 5.06 -55.40 -0.28 -14.74 16
13 C 0.50 10.15 7.85 -11.64 -0.09 10.06 16
14 O -0.53 -12.06 16.14 5.49 0.09 -11.97 16
15 C 0.51 8.98 7.73 -11.64 -0.09 8.89 16
16 O -0.51 -9.32 13.89 5.45 0.08 -9.24 16
17 N -0.64 -9.90 5.20 -10.25 -0.05 -9.96 16
18 C 0.13 1.83 6.31 -83.66 -0.53 1.30 16
19 C -0.09 -1.17 8.70 -39.28 -0.34 -1.51 16
20 C -0.13 -1.36 10.02 -39.58 -0.40 -1.76 16
21 C -0.09 -0.86 9.85 -39.27 -0.39 -1.25 16
22 C -0.12 -1.34 5.77 -104.94 -0.61 -1.95 16
23 C 0.11 1.46 5.87 -38.66 -0.23 1.23 16
24 O -0.30 -3.93 9.41 -19.11 -0.18 -4.11 16
25 C 0.15 1.49 1.08 -91.83 -0.10 1.39 16
26 C -0.17 -1.72 8.52 37.16 0.32 -1.40 16
27 C -0.14 -1.09 8.79 37.16 0.33 -0.76 16
28 C -0.18 -1.55 8.74 -36.15 -0.32 -1.87 16
29 C -0.09 -0.82 10.08 -37.41 -0.38 -1.19 16
30 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16
31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16
34 H 0.40 8.08 8.01 -40.82 -0.33 7.76 16
35 H 0.43 6.33 8.10 -40.82 -0.33 6.00 16
36 H 0.15 2.09 6.19 -52.48 -0.32 1.77 16
37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16
38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16
39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
41 H 0.06 0.69 7.78 -51.93 -0.40 0.29 16
42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16
45 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16
46 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16
LS Contribution 386.04 15.07 5.82 5.82
Total: -1.00 -30.41 386.04 -8.26 -38.66
By element:
Atomic # 1 Polarization: 18.59 SS G_CDS: -6.29 Total: 12.31 kcal
Atomic # 6 Polarization: 4.58 SS G_CDS: -3.04 Total: 1.53 kcal
Atomic # 7 Polarization: -48.85 SS G_CDS: 0.29 Total: -48.56 kcal
Atomic # 8 Polarization: -25.31 SS G_CDS: -0.02 Total: -25.32 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -30.41 -8.26 -38.66 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000873821862.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.789 kcal
(2) G-P(sol) polarization free energy of solvation -30.407 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.197 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.453 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds