Wall clock time and date at job start Sat Apr 11 2020 07:06:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.21297 * 119.99962 * 2 1
4 4 C 1.46854 * 119.99957 * 180.02562 * 2 1 3
5 5 C 1.40058 * 120.09253 * 185.64462 * 4 2 1
6 6 C 1.36604 * 119.90084 * 180.02562 * 5 4 2
7 7 C 1.39257 * 120.09664 * 0.02969 * 6 5 4
8 8 N 1.39162 * 119.90229 * 179.97438 * 7 6 5
9 9 C 1.34770 * 119.99681 * 143.54199 * 8 7 6
10 10 O 1.21364 * 120.00501 * 5.01355 * 9 8 7
11 11 C 1.49371 * 120.00053 * 185.01627 * 9 8 7
12 12 O 1.21364 * 119.99539 * 1.85675 * 11 9 8
13 13 N 1.34776 * 120.00119 * 181.57935 * 11 9 8
14 14 C 1.46495 * 120.00380 * 354.81492 * 13 11 9
15 15 C 1.50701 * 109.46941 * 83.57743 * 14 13 11
16 16 H 1.07996 * 119.99942 * 0.02562 * 15 14 13
17 17 C 1.37883 * 120.00008 * 179.97438 * 15 14 13
18 18 N 1.31512 * 119.99713 * 0.02562 * 17 15 14
19 19 Si 1.86798 * 119.99928 * 180.02562 * 17 15 14
20 20 H 1.48498 * 109.47121 * 359.97438 * 19 17 15
21 21 H 1.48499 * 109.47276 * 120.00346 * 19 17 15
22 22 H 1.48502 * 109.46750 * 240.00223 * 19 17 15
23 23 C 1.46501 * 119.99834 * 174.81682 * 13 11 9
24 24 C 1.52998 * 109.47217 * 94.75096 * 23 13 11
25 25 C 1.53005 * 117.49734 * 243.62299 * 24 23 13
26 26 C 1.52998 * 117.49832 * 175.00275 * 24 23 13
27 27 C 1.39252 * 120.19347 * 0.22395 * 7 6 5
28 28 C 1.36610 * 120.09564 * 359.49047 * 27 7 6
29 29 H 1.08998 * 109.47013 * 185.04989 * 1 2 3
30 30 H 1.08996 * 109.47421 * 305.05417 * 1 2 3
31 31 H 1.09003 * 109.46927 * 65.05213 * 1 2 3
32 32 H 1.07997 * 120.05155 * 359.97438 * 5 4 2
33 33 H 1.08007 * 119.95183 * 179.97438 * 6 5 4
34 34 H 0.96994 * 119.99748 * 323.54005 * 8 7 6
35 35 H 1.08995 * 109.47112 * 203.58402 * 14 13 11
36 36 H 1.09001 * 109.46765 * 323.58650 * 14 13 11
37 37 H 0.97000 * 119.99842 * 179.97438 * 18 17 15
38 38 H 1.08996 * 109.47154 * 214.75298 * 23 13 11
39 39 H 1.09007 * 109.46843 * 334.75264 * 23 13 11
40 40 H 1.08992 * 115.55175 * 29.32696 * 24 23 13
41 41 H 1.08993 * 117.50309 * 0.02562 * 25 24 23
42 42 H 1.09002 * 117.49718 * 145.02418 * 25 24 23
43 43 H 1.09004 * 117.49541 * 214.97798 * 26 24 23
44 44 H 1.09004 * 117.50201 * 359.97438 * 26 24 23
45 45 H 1.08003 * 119.95722 * 179.72578 * 27 7 6
46 46 H 1.07994 * 120.04984 * 180.25430 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1135 1.0505 0.0000
4 6 2.2413 -1.2718 -0.0006
5 6 3.6367 -1.2771 0.1186
6 6 4.3159 -2.4623 0.1171
7 6 3.6227 -3.6641 -0.0033
8 7 4.3187 -4.8692 -0.0049
9 6 3.7875 -5.9548 0.5914
10 8 2.6648 -5.9071 1.0499
11 6 4.5806 -7.2169 0.6882
12 8 5.7156 -7.2546 0.2600
13 7 4.0379 -8.3120 1.2561
14 6 2.7146 -8.2343 1.8798
15 6 1.6514 -8.3947 0.8239
16 1 1.9333 -8.5404 -0.2084
17 6 0.3188 -8.3564 1.1759
18 7 -0.0243 -8.1795 2.4331
19 14 -0.9990 -8.5560 -0.1328
20 1 -0.3560 -8.7394 -1.4588
21 1 -1.8334 -9.7434 0.1818
22 1 -1.8552 -7.3430 -0.1620
23 6 4.7713 -9.5802 1.2498
24 6 5.5478 -9.7269 2.5598
25 6 7.0748 -9.7722 2.4746
26 6 6.2886 -11.0442 2.7983
27 6 2.2358 -3.6633 -0.1274
28 6 1.5481 -2.4828 -0.1209
29 1 -0.3633 -1.0237 0.0905
30 1 -0.3634 0.5902 0.8412
31 1 -0.3633 0.4335 -0.9318
32 1 4.1752 -0.3454 0.2107
33 1 5.3920 -2.4673 0.2086
34 1 5.1860 -4.9278 -0.4353
35 1 2.6146 -9.0283 2.6199
36 1 2.5992 -7.2663 2.3675
37 1 -0.9618 -8.1523 2.6807
38 1 4.0674 -10.4065 1.1502
39 1 5.4676 -9.5930 0.4112
40 1 5.1062 -9.2340 3.4258
41 1 7.5262 -9.6970 1.4854
42 1 7.6381 -9.3088 3.2847
43 1 6.3346 -11.4177 3.8213
44 1 6.2224 -11.8065 2.0220
45 1 1.7024 -4.5974 -0.2250
46 1 0.4721 -2.4833 -0.2130
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000132731968.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:35
Heat of formation + Delta-G solvation = -32.473789 kcal
Electronic energy + Delta-G solvation = -29809.492426 eV
Core-core repulsion = 25666.141772 eV
Total energy + Delta-G solvation = -4143.350654 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.79844 -39.83556 -38.80065 -37.62630 -36.95630 -35.37036 -34.16475 -32.46464
-31.71387 -30.67842 -28.94525 -28.06338 -26.84692 -24.62080 -23.15180 -22.80689
-22.31056 -22.08296 -20.47121 -19.88217 -19.34562 -17.88427 -17.04418 -16.74003
-16.62826 -16.14516 -15.71093 -15.24884 -15.03742 -14.99182 -14.60144 -14.52552
-14.34396 -14.23079 -13.93238 -13.57864 -13.40283 -13.13007 -12.72248 -12.62748
-12.38559 -12.26839 -12.16992 -12.09608 -11.68223 -11.48185 -11.35190 -11.17396
-10.99295 -10.87259 -10.58483 -10.31213 -10.18290 -10.06416 -9.81315 -9.77260
-9.66176 -9.11496 -8.78696 -8.37389 -8.14857 -7.92809 -6.09894 -4.12496
0.56729 1.44707 1.93692 2.39769 2.76829 3.23602 3.31961 3.34941
3.67577 3.86458 3.90903 4.03782 4.10467 4.38423 4.71571 4.89330
4.92865 4.96121 4.97065 5.13037 5.21744 5.22357 5.26996 5.28151
5.34115 5.45043 5.61972 5.63656 5.76307 5.76720 5.91779 6.00537
6.03941 6.06325 6.24415 6.26555 6.32344 6.36308 6.41930 6.48796
6.63422 6.96982 7.23344 7.31738 7.43116 7.47003 7.78487 8.00009
8.10952 8.22418 8.55787 8.88059 9.50339 10.98948
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.009696 B = 0.003484 C = 0.002694
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2887.080791 B = 8034.580283 C =10389.531138
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.401 3.599
3 O -0.472 6.472
4 C -0.203 4.203
5 C -0.040 4.040
6 C -0.164 4.164
7 C 0.196 3.804
8 N -0.663 5.663
9 C 0.489 3.511
10 O -0.424 6.424
11 C 0.509 3.491
12 O -0.556 6.556
13 N -0.555 5.555
14 C 0.227 3.773
15 C -0.516 4.516
16 H 0.054 0.946
17 C 0.071 3.929
18 N -0.888 5.888
19 Si 0.891 3.109
20 H -0.275 1.275
21 H -0.284 1.284
22 H -0.283 1.283
23 C 0.146 3.854
24 C -0.162 4.162
25 C -0.175 4.175
26 C -0.178 4.178
27 C -0.136 4.136
28 C -0.049 4.049
29 H 0.086 0.914
30 H 0.092 0.908
31 H 0.093 0.907
32 H 0.133 0.867
33 H 0.132 0.868
34 H 0.418 0.582
35 H 0.034 0.966
36 H 0.066 0.934
37 H 0.262 0.738
38 H 0.088 0.912
39 H 0.079 0.921
40 H 0.106 0.894
41 H 0.095 0.905
42 H 0.088 0.912
43 H 0.092 0.908
44 H 0.093 0.907
45 H 0.152 0.848
46 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.794 6.468 -3.080 9.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.261 4.261
2 C 0.281 3.719
3 O -0.350 6.350
4 C -0.205 4.205
5 C -0.059 4.059
6 C -0.185 4.185
7 C 0.099 3.901
8 N -0.312 5.312
9 C 0.270 3.730
10 O -0.290 6.290
11 C 0.291 3.709
12 O -0.437 6.437
13 N -0.285 5.285
14 C 0.108 3.892
15 C -0.555 4.555
16 H 0.073 0.927
17 C -0.132 4.132
18 N -0.527 5.527
19 Si 0.719 3.281
20 H -0.199 1.199
21 H -0.210 1.210
22 H -0.209 1.209
23 C 0.023 3.977
24 C -0.181 4.181
25 C -0.212 4.212
26 C -0.215 4.215
27 C -0.156 4.156
28 C -0.068 4.068
29 H 0.105 0.895
30 H 0.110 0.890
31 H 0.111 0.889
32 H 0.151 0.849
33 H 0.149 0.851
34 H 0.256 0.744
35 H 0.052 0.948
36 H 0.084 0.916
37 H 0.072 0.928
38 H 0.106 0.894
39 H 0.097 0.903
40 H 0.124 0.876
41 H 0.113 0.887
42 H 0.106 0.894
43 H 0.110 0.890
44 H 0.112 0.888
45 H 0.170 0.830
46 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 6.667 6.898 -2.773 9.986
hybrid contribution -0.533 -0.331 -0.760 0.985
sum 6.135 6.567 -3.533 9.656
Atomic orbital electron populations
1.22252 0.94056 1.05091 1.04678 1.22375 0.91578 0.87611 0.70333
1.90516 1.72182 1.34502 1.37761 1.20437 0.94629 0.94704 1.10757
1.20867 0.92985 0.97917 0.94138 1.20676 1.00512 0.91048 1.06215
1.18072 0.91952 0.85145 0.94914 1.43234 1.23571 1.08039 1.56315
1.20513 0.87617 0.84767 0.80075 1.90990 1.16154 1.81461 1.40427
1.19662 0.86095 0.84945 0.80192 1.90660 1.18166 1.84486 1.50429
1.48220 1.20479 1.07413 1.52343 1.19984 0.75455 0.99957 0.93760
1.21223 0.90629 1.49844 0.93798 0.92748 1.24792 0.98254 0.94926
0.95232 1.69922 1.17303 1.49409 1.16044 0.86560 0.81884 0.77741
0.81919 1.19930 1.21017 1.20882 1.21048 0.95211 0.86023 0.95397
1.22734 0.93959 1.01129 1.00315 1.22978 0.94204 1.01193 1.02805
1.22915 1.04956 0.91302 1.02377 1.21231 0.92976 1.00124 1.01257
1.21177 1.00187 0.90870 0.94539 0.89541 0.88978 0.88851 0.84870
0.85055 0.74410 0.94785 0.91632 0.92841 0.89401 0.90288 0.87575
0.88676 0.89384 0.88997 0.88813 0.83015 0.84609
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.77 10.16 36.01 0.37 -1.41 16
2 C 0.40 4.87 7.20 -30.83 -0.22 4.65 16
3 O -0.47 -7.03 17.10 5.54 0.09 -6.93 16
4 C -0.20 -2.59 5.87 -105.05 -0.62 -3.20 16
5 C -0.04 -0.50 9.54 -39.49 -0.38 -0.88 16
6 C -0.16 -2.02 9.90 -39.79 -0.39 -2.41 16
7 C 0.20 2.85 6.27 -83.78 -0.53 2.33 16
8 N -0.66 -10.06 5.28 -10.27 -0.05 -10.12 16
9 C 0.49 9.26 7.56 -11.63 -0.09 9.17 16
10 O -0.42 -9.31 9.64 5.48 0.05 -9.26 16
11 C 0.51 9.96 7.67 -11.62 -0.09 9.87 16
12 O -0.56 -10.79 16.05 5.48 0.09 -10.70 16
13 N -0.56 -11.14 2.47 -175.60 -0.43 -11.58 16
14 C 0.23 5.35 4.79 -5.20 -0.02 5.32 16
15 C -0.52 -13.29 7.84 -34.44 -0.27 -13.56 16
16 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16
17 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16
18 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16
19 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16
20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
23 C 0.15 2.49 5.67 -4.04 -0.02 2.46 16
24 C -0.16 -2.44 6.01 -90.62 -0.54 -2.98 16
25 C -0.17 -2.28 10.18 -26.73 -0.27 -2.55 16
26 C -0.18 -2.16 10.25 -26.73 -0.27 -2.44 16
27 C -0.14 -2.09 8.61 -39.79 -0.34 -2.43 16
28 C -0.05 -0.63 9.35 -39.49 -0.37 -1.00 16
29 H 0.09 0.66 5.69 -51.93 -0.30 0.37 16
30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.13 1.51 7.65 -52.49 -0.40 1.11 16
33 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16
34 H 0.42 5.41 8.30 -40.82 -0.34 5.07 16
35 H 0.03 0.84 8.02 -51.93 -0.42 0.42 16
36 H 0.07 1.69 5.79 -51.93 -0.30 1.39 16
37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16
38 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16
39 H 0.08 1.31 7.10 -51.92 -0.37 0.94 16
40 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16
41 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16
42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16
43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16
45 H 0.15 2.71 6.31 -52.48 -0.33 2.38 16
46 H 0.14 1.44 6.02 -52.49 -0.32 1.12 16
LS Contribution 391.08 15.07 5.89 5.89
Total: -1.00 -30.65 391.08 -8.92 -39.57
By element:
Atomic # 1 Polarization: 14.90 SS G_CDS: -6.11 Total: 8.78 kcal
Atomic # 6 Polarization: 6.87 SS G_CDS: -4.16 Total: 2.71 kcal
Atomic # 7 Polarization: -45.88 SS G_CDS: 0.25 Total: -45.63 kcal
Atomic # 8 Polarization: -27.13 SS G_CDS: 0.24 Total: -26.90 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -30.65 -8.92 -39.57 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000132731968.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.096 kcal
(2) G-P(sol) polarization free energy of solvation -30.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.554 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds