Wall clock time and date at job start Sat Apr 11 2020 07:06:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.21297 * 119.99962 * 2 1
4 4 C 1.46854 * 119.99957 * 180.02562 * 2 1 3
5 5 C 1.40058 * 120.09253 * 185.64462 * 4 2 1
6 6 C 1.36604 * 119.90084 * 180.02562 * 5 4 2
7 7 C 1.39257 * 120.09664 * 0.02969 * 6 5 4
8 8 N 1.39162 * 119.90229 * 179.97438 * 7 6 5
9 9 C 1.34770 * 119.99681 * 143.54199 * 8 7 6
10 10 O 1.21364 * 120.00501 * 5.01355 * 9 8 7
11 11 C 1.49371 * 120.00053 * 185.01627 * 9 8 7
12 12 O 1.21364 * 119.99539 * 1.85675 * 11 9 8
13 13 N 1.34776 * 120.00119 * 181.57935 * 11 9 8
14 14 C 1.46495 * 120.00380 * 354.81492 * 13 11 9
15 15 C 1.50701 * 109.46941 * 83.57743 * 14 13 11
16 16 H 1.07996 * 119.99942 * 0.02562 * 15 14 13
17 17 C 1.37883 * 120.00008 * 179.97438 * 15 14 13
18 18 N 1.31512 * 119.99713 * 0.02562 * 17 15 14
19 19 Si 1.86798 * 119.99928 * 180.02562 * 17 15 14
20 20 H 1.48498 * 109.47121 * 359.97438 * 19 17 15
21 21 H 1.48499 * 109.47276 * 120.00346 * 19 17 15
22 22 H 1.48502 * 109.46750 * 240.00223 * 19 17 15
23 23 C 1.46501 * 119.99834 * 174.81682 * 13 11 9
24 24 C 1.52998 * 109.47217 * 94.75096 * 23 13 11
25 25 C 1.53005 * 117.49734 * 243.62299 * 24 23 13
26 26 C 1.52998 * 117.49832 * 175.00275 * 24 23 13
27 27 C 1.39252 * 120.19347 * 0.22395 * 7 6 5
28 28 C 1.36610 * 120.09564 * 359.49047 * 27 7 6
29 29 H 1.08998 * 109.47013 * 185.04989 * 1 2 3
30 30 H 1.08996 * 109.47421 * 305.05417 * 1 2 3
31 31 H 1.09003 * 109.46927 * 65.05213 * 1 2 3
32 32 H 1.07997 * 120.05155 * 359.97438 * 5 4 2
33 33 H 1.08007 * 119.95183 * 179.97438 * 6 5 4
34 34 H 0.96994 * 119.99748 * 323.54005 * 8 7 6
35 35 H 1.08995 * 109.47112 * 203.58402 * 14 13 11
36 36 H 1.09001 * 109.46765 * 323.58650 * 14 13 11
37 37 H 0.97000 * 119.99842 * 179.97438 * 18 17 15
38 38 H 1.08996 * 109.47154 * 214.75298 * 23 13 11
39 39 H 1.09007 * 109.46843 * 334.75264 * 23 13 11
40 40 H 1.08992 * 115.55175 * 29.32696 * 24 23 13
41 41 H 1.08993 * 117.50309 * 0.02562 * 25 24 23
42 42 H 1.09002 * 117.49718 * 145.02418 * 25 24 23
43 43 H 1.09004 * 117.49541 * 214.97798 * 26 24 23
44 44 H 1.09004 * 117.50201 * 359.97438 * 26 24 23
45 45 H 1.08003 * 119.95722 * 179.72578 * 27 7 6
46 46 H 1.07994 * 120.04984 * 180.25430 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1135 1.0505 0.0000
4 6 2.2413 -1.2718 -0.0006
5 6 3.6367 -1.2771 0.1186
6 6 4.3159 -2.4623 0.1171
7 6 3.6227 -3.6641 -0.0033
8 7 4.3187 -4.8692 -0.0049
9 6 3.7875 -5.9548 0.5914
10 8 2.6648 -5.9071 1.0499
11 6 4.5806 -7.2169 0.6882
12 8 5.7156 -7.2546 0.2600
13 7 4.0379 -8.3120 1.2561
14 6 2.7146 -8.2343 1.8798
15 6 1.6514 -8.3947 0.8239
16 1 1.9333 -8.5404 -0.2084
17 6 0.3188 -8.3564 1.1759
18 7 -0.0243 -8.1795 2.4331
19 14 -0.9990 -8.5560 -0.1328
20 1 -0.3560 -8.7394 -1.4588
21 1 -1.8334 -9.7434 0.1818
22 1 -1.8552 -7.3430 -0.1620
23 6 4.7713 -9.5802 1.2498
24 6 5.5478 -9.7269 2.5598
25 6 7.0748 -9.7722 2.4746
26 6 6.2886 -11.0442 2.7983
27 6 2.2358 -3.6633 -0.1274
28 6 1.5481 -2.4828 -0.1209
29 1 -0.3633 -1.0237 0.0905
30 1 -0.3634 0.5902 0.8412
31 1 -0.3633 0.4335 -0.9318
32 1 4.1752 -0.3454 0.2107
33 1 5.3920 -2.4673 0.2086
34 1 5.1860 -4.9278 -0.4353
35 1 2.6146 -9.0283 2.6199
36 1 2.5992 -7.2663 2.3675
37 1 -0.9618 -8.1523 2.6807
38 1 4.0674 -10.4065 1.1502
39 1 5.4676 -9.5930 0.4112
40 1 5.1062 -9.2340 3.4258
41 1 7.5262 -9.6970 1.4854
42 1 7.6381 -9.3088 3.2847
43 1 6.3346 -11.4177 3.8213
44 1 6.2224 -11.8065 2.0220
45 1 1.7024 -4.5974 -0.2250
46 1 0.4721 -2.4833 -0.2130
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000132731968.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:34
Heat of formation + Delta-G solvation = -49.392308 kcal
Electronic energy + Delta-G solvation = -29810.226069 eV
Core-core repulsion = 25666.141772 eV
Total energy + Delta-G solvation = -4144.084296 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-42.17429 -41.01693 -40.07685 -38.85916 -38.27071 -36.81345 -35.60445 -34.39598
-32.70918 -31.75036 -29.96166 -29.70636 -28.44463 -25.96811 -24.90549 -23.91229
-23.53423 -23.15401 -21.69927 -20.90998 -20.75507 -19.19710 -18.59929 -18.44150
-17.96958 -17.42011 -16.95590 -16.85598 -16.32531 -16.11746 -15.98658 -15.89470
-15.54925 -15.42280 -15.01163 -14.92018 -14.69337 -14.41536 -14.26452 -13.89775
-13.75273 -13.62646 -13.32433 -13.03847 -12.99391 -12.98406 -12.74611 -12.57110
-12.36439 -12.32033 -12.21355 -11.89801 -11.72606 -11.40703 -11.31505 -10.85477
-10.80839 -10.62818 -10.24078 -10.04307 -9.64434 -9.28478 -8.12446 -6.21101
-0.51936 0.39388 0.46681 1.26460 1.39789 1.42155 1.46484 1.52083
2.21325 2.39821 2.56719 2.78363 2.95372 3.13944 3.21668 3.38419
3.76079 3.81732 3.89153 4.01307 4.11900 4.12620 4.24235 4.35165
4.39745 4.40791 4.60964 4.64112 4.65349 4.75173 4.81388 4.86630
4.98804 5.02936 5.03134 5.16810 5.19086 5.26287 5.28904 5.29861
5.35334 5.42644 5.55370 5.77013 5.86263 6.05661 6.12834 6.31348
6.51729 6.74876 6.83472 7.05760 7.45183 8.96113
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.009696 B = 0.003484 C = 0.002694
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2887.080791 B = 8034.580283 C =10389.531138
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.403 3.597
3 O -0.502 6.502
4 C -0.205 4.205
5 C -0.044 4.044
6 C -0.150 4.150
7 C 0.175 3.825
8 N -0.646 5.646
9 C 0.489 3.511
10 O -0.462 6.462
11 C 0.506 3.494
12 O -0.554 6.554
13 N -0.561 5.561
14 C 0.249 3.751
15 C -0.517 4.517
16 H 0.046 0.954
17 C 0.025 3.975
18 N -0.921 5.921
19 Si 0.949 3.051
20 H -0.272 1.272
21 H -0.278 1.278
22 H -0.280 1.280
23 C 0.145 3.855
24 C -0.188 4.188
25 C -0.168 4.168
26 C -0.155 4.155
27 C -0.155 4.155
28 C -0.045 4.045
29 H 0.096 0.904
30 H 0.103 0.897
31 H 0.111 0.889
32 H 0.147 0.853
33 H 0.159 0.841
34 H 0.429 0.571
35 H 0.018 0.982
36 H 0.043 0.957
37 H 0.263 0.737
38 H 0.084 0.916
39 H 0.085 0.915
40 H 0.088 0.912
41 H 0.096 0.904
42 H 0.098 0.902
43 H 0.107 0.893
44 H 0.107 0.893
45 H 0.122 0.878
46 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.384 7.009 -3.878 10.894
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.257 4.257
2 C 0.285 3.715
3 O -0.381 6.381
4 C -0.207 4.207
5 C -0.063 4.063
6 C -0.170 4.170
7 C 0.079 3.921
8 N -0.294 5.294
9 C 0.270 3.730
10 O -0.331 6.331
11 C 0.289 3.711
12 O -0.435 6.435
13 N -0.290 5.290
14 C 0.129 3.871
15 C -0.556 4.556
16 H 0.064 0.936
17 C -0.174 4.174
18 N -0.561 5.561
19 Si 0.775 3.225
20 H -0.197 1.197
21 H -0.204 1.204
22 H -0.205 1.205
23 C 0.024 3.976
24 C -0.207 4.207
25 C -0.205 4.205
26 C -0.192 4.192
27 C -0.175 4.175
28 C -0.063 4.063
29 H 0.115 0.885
30 H 0.121 0.879
31 H 0.129 0.871
32 H 0.165 0.835
33 H 0.177 0.823
34 H 0.269 0.731
35 H 0.036 0.964
36 H 0.061 0.939
37 H 0.072 0.928
38 H 0.102 0.898
39 H 0.103 0.897
40 H 0.107 0.893
41 H 0.114 0.886
42 H 0.116 0.884
43 H 0.125 0.875
44 H 0.126 0.874
45 H 0.140 0.860
46 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges 7.302 7.442 -3.602 11.031
hybrid contribution -0.638 -0.415 -0.533 0.929
sum 6.664 7.027 -4.135 10.530
Atomic orbital electron populations
1.22291 0.91182 1.06213 1.06030 1.22776 0.93097 0.86622 0.68969
1.90513 1.73078 1.35227 1.39318 1.20686 0.95073 0.95023 1.09897
1.21134 0.93160 0.98448 0.93546 1.20879 1.01793 0.89828 1.04480
1.18243 0.91911 0.85417 0.96521 1.43018 1.23731 1.07458 1.55241
1.20484 0.87148 0.85328 0.79993 1.90985 1.17557 1.82118 1.42487
1.19822 0.86218 0.85139 0.79952 1.90644 1.17921 1.84562 1.50330
1.48163 1.19668 1.08811 1.52406 1.19455 0.76797 0.97936 0.92936
1.21370 0.91416 1.49113 0.93664 0.93612 1.25487 1.00222 0.94786
0.96948 1.70025 1.17688 1.50661 1.17683 0.85654 0.79449 0.77805
0.79607 1.19661 1.20362 1.20536 1.21179 0.95107 0.84508 0.96852
1.22569 0.95203 1.04333 0.98631 1.23032 0.92473 1.01683 1.03273
1.23037 1.01956 0.90483 1.03749 1.21116 0.93597 0.99825 1.02987
1.21335 1.01284 0.90043 0.93676 0.88505 0.87871 0.87100 0.83532
0.82327 0.73094 0.96360 0.93911 0.92793 0.89766 0.89716 0.89337
0.88598 0.88401 0.87463 0.87446 0.85970 0.82465
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -3.00 10.16 71.24 0.72 -2.27 16
2 C 0.40 9.09 7.20 27.94 0.20 9.29 16
3 O -0.50 -14.23 17.10 -3.08 -0.05 -14.28 16
4 C -0.21 -4.93 5.87 -20.14 -0.12 -5.05 16
5 C -0.04 -1.02 9.54 22.33 0.21 -0.81 16
6 C -0.15 -3.44 9.90 22.13 0.22 -3.22 16
7 C 0.17 5.04 6.27 38.47 0.24 5.28 16
8 N -0.65 -19.59 5.28 -304.78 -1.61 -21.20 16
9 C 0.49 19.02 7.56 87.25 0.66 19.67 16
10 O -0.46 -21.22 9.64 -3.29 -0.03 -21.25 16
11 C 0.51 20.13 7.67 87.24 0.67 20.80 16
12 O -0.55 -21.24 16.05 -3.29 -0.05 -21.29 16
13 N -0.56 -23.15 2.47 -827.84 -2.05 -25.20 16
14 C 0.25 12.22 4.79 85.63 0.41 12.63 16
15 C -0.52 -27.36 7.84 25.60 0.20 -27.16 16
16 H 0.05 2.45 7.81 -2.91 -0.02 2.43 16
17 C 0.03 1.35 5.46 84.66 0.46 1.82 16
18 N -0.92 -52.37 13.29 21.45 0.28 -52.09 16
19 Si 0.95 42.70 29.54 68.60 2.03 44.72 16
20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16
21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16
22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16
23 C 0.15 4.99 5.67 86.38 0.49 5.48 16
24 C -0.19 -5.61 6.01 -10.79 -0.06 -5.68 16
25 C -0.17 -4.11 10.18 30.60 0.31 -3.80 16
26 C -0.15 -3.47 10.25 30.59 0.31 -3.15 16
27 C -0.15 -4.84 8.61 22.13 0.19 -4.65 16
28 C -0.04 -1.13 9.35 22.33 0.21 -0.92 16
29 H 0.10 1.24 5.69 -2.39 -0.01 1.23 16
30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16
32 H 0.15 3.03 7.65 -2.91 -0.02 3.01 16
33 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16
34 H 0.43 10.78 8.30 -92.71 -0.77 10.01 16
35 H 0.02 0.95 8.02 -2.39 -0.02 0.93 16
36 H 0.04 2.33 5.79 -2.39 -0.01 2.31 16
37 H 0.26 14.20 8.31 -92.71 -0.77 13.42 16
38 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16
39 H 0.08 2.77 7.10 -2.38 -0.02 2.75 16
40 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16
41 H 0.10 2.35 8.03 -2.39 -0.02 2.33 16
42 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16
43 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16
44 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16
45 H 0.12 4.60 6.31 -2.91 -0.02 4.58 16
46 H 0.16 3.13 6.02 -2.91 -0.02 3.11 16
Total: -1.00 -67.21 391.08 4.10 -63.11
By element:
Atomic # 1 Polarization: 28.96 SS G_CDS: 0.26 Total: 29.22 kcal
Atomic # 6 Polarization: 12.93 SS G_CDS: 5.33 Total: 18.26 kcal
Atomic # 7 Polarization: -95.11 SS G_CDS: -3.37 Total: -98.48 kcal
Atomic # 8 Polarization: -56.69 SS G_CDS: -0.14 Total: -56.82 kcal
Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal
Total: -67.21 4.10 -63.11 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000132731968.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.717 kcal
(2) G-P(sol) polarization free energy of solvation -67.213 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.496 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.392 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds