Wall clock time and date at job start Sat Apr 11 2020 07:07:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 N 1.28448 * 125.19298 * 2 1
4 4 C 1.30862 * 110.92724 * 180.28140 * 3 2 1
5 5 C 1.50697 * 126.06439 * 179.75474 * 4 3 2
6 6 F 1.39899 * 109.47776 * 29.96069 * 5 4 3
7 7 F 1.39906 * 109.46990 * 149.95899 * 5 4 3
8 8 C 1.39667 * 107.86291 * 359.71526 * 4 3 2
9 9 C 1.36602 * 125.19186 * 179.79456 * 2 1 3
10 10 C 1.47158 * 126.88143 * 359.97438 * 9 2 1
11 11 O 1.21636 * 120.00237 * 355.16479 * 10 9 2
12 12 N 1.34780 * 120.00078 * 175.16000 * 10 9 2
13 13 C 1.46501 * 119.99973 * 175.41408 * 12 10 9
14 14 C 1.52998 * 109.46738 * 180.02562 * 13 12 10
15 15 H 1.08998 * 110.89384 * 302.57808 * 14 13 12
16 16 C 1.54908 * 111.00563 * 66.45947 * 14 13 12
17 17 N 1.47418 * 104.83739 * 155.08108 * 16 14 13
18 18 C 1.36939 * 125.65081 * 155.83393 * 17 16 14
19 19 H 1.07998 * 120.00145 * 0.02562 * 18 17 16
20 20 C 1.38817 * 120.00084 * 180.02562 * 18 17 16
21 21 N 1.31622 * 119.99777 * 359.97438 * 20 18 17
22 22 Si 1.86789 * 120.00221 * 180.02562 * 20 18 17
23 23 H 1.48500 * 109.47382 * 60.00038 * 22 20 18
24 24 H 1.48501 * 109.47510 * 179.97438 * 22 20 18
25 25 H 1.48498 * 109.47310 * 300.00038 * 22 20 18
26 26 C 1.47030 * 108.70069 * 335.87116 * 17 16 14
27 27 C 1.54321 * 107.27026 * 1.05661 * 26 17 16
28 28 H 1.09002 * 110.71675 * 140.55110 * 27 26 17
29 29 O 1.42895 * 110.72014 * 263.83159 * 27 26 17
30 30 H 1.08997 * 109.46988 * 266.27649 * 1 2 3
31 31 H 1.09000 * 109.47315 * 26.27645 * 1 2 3
32 32 H 1.08999 * 109.47491 * 146.27775 * 1 2 3
33 33 H 1.08996 * 109.46953 * 269.95407 * 5 4 3
34 34 H 1.08005 * 127.32155 * 179.97438 * 8 4 3
35 35 H 0.97004 * 119.99672 * 355.41967 * 12 10 9
36 36 H 1.09000 * 109.46682 * 60.00542 * 13 12 10
37 37 H 1.09000 * 109.47529 * 300.00072 * 13 12 10
38 38 H 1.09003 * 110.36565 * 273.92162 * 16 14 13
39 39 H 1.09005 * 110.36791 * 36.24071 * 16 14 13
40 40 H 0.97005 * 120.00027 * 180.02562 * 21 20 18
41 41 H 1.08999 * 109.88163 * 120.48004 * 26 17 16
42 42 H 1.09006 * 109.87934 * 241.48259 * 26 17 16
43 43 H 0.96699 * 114.00152 * 293.51880 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2052 1.0497 0.0000
4 6 3.4735 0.7272 -0.0060
5 6 4.6334 1.6892 -0.0132
6 9 4.2664 2.8675 0.6458
7 9 5.7246 1.1089 0.6424
8 6 3.5611 -0.6667 -0.0037
9 6 2.2522 -1.1163 0.0040
10 6 1.7993 -2.5165 0.0095
11 8 0.6134 -2.7717 0.0998
12 7 2.6984 -3.5160 -0.0854
13 6 2.2586 -4.9094 0.0210
14 6 3.4668 -5.8375 -0.1192
15 1 3.9820 -5.6650 -1.0641
16 6 4.4350 -5.6736 1.0789
17 7 5.1584 -6.9556 1.1579
18 6 6.3942 -7.1416 1.7179
19 1 6.9218 -6.3051 2.1518
20 6 6.9687 -8.4052 1.7278
21 7 6.3254 -9.4247 1.1994
22 14 8.6539 -8.6591 2.4923
23 1 8.6104 -8.2736 3.9258
24 1 9.0401 -10.0883 2.3762
25 1 9.6510 -7.8173 1.7835
26 6 4.3338 -8.0014 0.5348
27 6 3.0454 -7.3242 0.0221
28 1 2.7519 -7.7352 -0.9438
29 8 1.9887 -7.4618 0.9741
30 1 -0.3633 -0.0667 1.0255
31 1 -0.3634 0.9215 -0.4549
32 1 -0.3634 -0.8547 -0.5705
33 1 4.9084 1.9192 -1.0425
34 1 4.4594 -1.2663 -0.0076
35 1 3.6367 -3.3128 -0.2242
36 1 1.5405 -5.1251 -0.7701
37 1 1.7889 -5.0691 0.9916
38 1 5.1315 -4.8557 0.8947
39 1 3.8753 -5.4967 1.9975
40 1 6.7267 -10.3079 1.2066
41 1 4.8732 -8.4513 -0.2987
42 1 4.0858 -8.7657 1.2714
43 1 1.6884 -8.3724 1.0994
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000958254415.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:52
Heat of formation + Delta-G solvation = -74.850691 kcal
Electronic energy + Delta-G solvation = -30051.949326 eV
Core-core repulsion = 25384.824292 eV
Total energy + Delta-G solvation = -4667.125033 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.145 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-49.21608 -47.24398 -42.99579 -39.65006 -38.30461 -35.21890 -34.72848 -33.99260
-32.39023 -31.42212 -29.59733 -29.05421 -27.79081 -25.75842 -25.51400 -24.15132
-22.88251 -21.42182 -20.55311 -20.16457 -19.70703 -18.38645 -17.85581 -17.43248
-17.36619 -16.59127 -16.50871 -16.42863 -16.24737 -15.33990 -15.11144 -14.86826
-14.42506 -14.13426 -14.07502 -13.91073 -13.74441 -13.57860 -13.43162 -13.38837
-13.01563 -12.84615 -12.74612 -12.62259 -11.96665 -11.79006 -11.50472 -11.28458
-11.26036 -10.83825 -10.70841 -10.55049 -10.39104 -10.12386 -9.99437 -9.82386
-9.67903 -9.48668 -9.25134 -9.07532 -8.69560 -6.91398 -5.78540 -3.11801
0.90723 1.84207 1.91300 2.91013 2.99535 3.37374 3.39594 3.42037
3.42759 3.79909 4.00976 4.36478 4.43853 4.58656 4.64021 4.64606
4.83351 4.88491 5.00990 5.05473 5.19096 5.23109 5.28300 5.35723
5.47846 5.52890 5.81493 5.84264 5.92614 6.02213 6.21153 6.27077
6.28630 6.32789 6.50756 6.81980 7.26024 7.33022 7.43531 7.50957
7.69947 7.93780 8.15310 8.17790 9.14150 9.74797 10.39702 11.33428
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.011592 B = 0.002724 C = 0.002242
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2414.900806 B =10277.253932 C =12483.816659
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.247 5.247
3 N -0.239 5.239
4 C -0.060 4.060
5 C 0.366 3.634
6 F -0.193 7.193
7 F -0.189 7.189
8 C -0.155 4.155
9 C -0.028 4.028
10 C 0.589 3.411
11 O -0.540 6.540
12 N -0.706 5.706
13 C 0.141 3.859
14 C -0.111 4.111
15 H 0.090 0.910
16 C 0.144 3.856
17 N -0.602 5.602
18 C -0.229 4.229
19 H 0.079 0.921
20 C -0.008 4.008
21 N -0.925 5.925
22 Si 0.914 3.086
23 H -0.285 1.285
24 H -0.290 1.290
25 H -0.284 1.284
26 C 0.153 3.847
27 C 0.084 3.916
28 H 0.058 0.942
29 O -0.565 6.565
30 H 0.090 0.910
31 H 0.097 0.903
32 H 0.111 0.889
33 H 0.131 0.869
34 H 0.172 0.828
35 H 0.405 0.595
36 H 0.069 0.931
37 H 0.084 0.916
38 H 0.037 0.963
39 H 0.026 0.974
40 H 0.253 0.747
41 H 0.053 0.947
42 H 0.050 0.950
43 H 0.376 0.624
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.474 17.476 -7.194 21.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.035 5.035
3 N -0.075 5.075
4 C -0.217 4.217
5 C 0.310 3.690
6 F -0.174 7.174
7 F -0.171 7.171
8 C -0.183 4.183
9 C -0.156 4.156
10 C 0.374 3.626
11 O -0.418 6.418
12 N -0.356 5.356
13 C 0.019 3.981
14 C -0.131 4.131
15 H 0.109 0.891
16 C 0.018 3.982
17 N -0.329 5.329
18 C -0.357 4.357
19 H 0.096 0.904
20 C -0.204 4.204
21 N -0.573 5.573
22 Si 0.744 3.256
23 H -0.211 1.211
24 H -0.216 1.216
25 H -0.211 1.211
26 C 0.028 3.972
27 C 0.023 3.977
28 H 0.076 0.924
29 O -0.370 6.370
30 H 0.109 0.891
31 H 0.115 0.885
32 H 0.130 0.870
33 H 0.148 0.852
34 H 0.189 0.811
35 H 0.240 0.760
36 H 0.087 0.913
37 H 0.102 0.898
38 H 0.055 0.945
39 H 0.044 0.956
40 H 0.063 0.937
41 H 0.071 0.929
42 H 0.068 0.932
43 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -10.962 18.629 -6.999 22.720
hybrid contribution 1.882 -1.424 0.472 2.407
sum -9.080 17.204 -6.527 20.519
Atomic orbital electron populations
1.22432 0.71575 1.05886 1.05477 1.45700 1.08219 1.01475 1.48095
1.73093 1.02752 1.13583 1.18052 1.22358 0.92726 0.94529 1.12076
1.19341 0.79567 0.76747 0.93303 1.93026 1.91970 1.48575 1.83863
1.93049 1.55040 1.84880 1.84102 1.22031 0.96499 0.93624 1.06161
1.21536 0.90834 0.90169 1.13057 1.16767 0.85878 0.82714 0.77287
1.90805 1.15965 1.84405 1.50652 1.45819 1.11039 1.06569 1.72200
1.21296 0.96558 0.76996 1.03297 1.22704 0.95665 0.93735 1.00949
0.89138 1.21581 0.92435 0.90161 0.94050 1.44352 1.17237 1.02471
1.68800 1.19035 0.91593 0.94261 1.30797 0.90357 1.24793 0.98932
0.95633 1.01068 1.69917 1.37815 0.99628 1.49937 0.86169 0.83518
0.76857 0.79047 1.21131 1.21603 1.21088 1.21868 0.87293 0.90702
0.97383 1.23113 0.89019 0.94708 0.90813 0.92427 1.86388 1.54170
1.32582 1.63895 0.89123 0.88464 0.87047 0.85239 0.81057 0.76002
0.91314 0.89768 0.94452 0.95646 0.93666 0.92922 0.93153 0.77677
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.70 10.65 59.84 0.64 1.34 16
2 N -0.25 -2.78 3.75 -63.89 -0.24 -3.02 16
3 N -0.24 -2.83 11.84 33.63 0.40 -2.43 16
4 C -0.06 -0.65 6.84 -82.47 -0.56 -1.22 16
5 C 0.37 3.20 5.84 36.00 0.21 3.41 16
6 F -0.19 -2.08 17.28 2.25 0.04 -2.04 16
7 F -0.19 -1.92 17.06 2.25 0.04 -1.88 16
8 C -0.15 -1.62 10.13 -38.99 -0.39 -2.01 16
9 C -0.03 -0.33 6.96 -82.06 -0.57 -0.90 16
10 C 0.59 7.67 7.79 -12.64 -0.10 7.57 16
11 O -0.54 -8.24 14.86 5.25 0.08 -8.16 16
12 N -0.71 -8.58 5.39 -61.47 -0.33 -8.91 16
13 C 0.14 1.98 4.74 -4.04 -0.02 1.96 16
14 C -0.11 -1.74 3.03 -88.47 -0.27 -2.01 16
15 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16
16 C 0.14 2.79 6.40 -2.53 -0.02 2.77 16
17 N -0.60 -14.69 3.39 -170.07 -0.58 -15.27 16
18 C -0.23 -6.19 10.28 -15.06 -0.15 -6.35 16
19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16
20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16
21 N -0.93 -26.28 10.31 55.49 0.57 -25.71 16
22 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16
23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
26 C 0.15 3.46 5.14 -3.06 -0.02 3.44 16
27 C 0.08 1.43 4.09 -24.90 -0.10 1.33 16
28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
29 O -0.56 -9.27 12.09 -35.23 -0.43 -9.69 16
30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.11 0.95 6.66 -51.93 -0.35 0.60 16
33 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.17 1.41 7.61 -52.48 -0.40 1.01 16
35 H 0.40 4.17 7.40 -40.82 -0.30 3.87 16
36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
37 H 0.08 1.37 7.42 -51.93 -0.39 0.98 16
38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
39 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16
40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16
41 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16
42 H 0.05 1.28 7.43 -51.93 -0.39 0.89 16
43 H 0.38 4.85 9.12 45.56 0.42 5.26 16
LS Contribution 368.37 15.07 5.55 5.55
Total: -1.00 -34.18 368.37 -6.08 -40.26
By element:
Atomic # 1 Polarization: 10.36 SS G_CDS: -4.71 Total: 5.65 kcal
Atomic # 6 Polarization: 10.47 SS G_CDS: -1.45 Total: 9.02 kcal
Atomic # 7 Polarization: -55.16 SS G_CDS: -0.18 Total: -55.34 kcal
Atomic # 8 Polarization: -17.50 SS G_CDS: -0.35 Total: -17.85 kcal
Atomic # 9 Polarization: -4.00 SS G_CDS: 0.08 Total: -3.92 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -34.18 -6.08 -40.26 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000958254415.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.593 kcal
(2) G-P(sol) polarization free energy of solvation -34.178 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.770 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds