Wall clock time and date at job start Sat Apr 11 2020 07:07:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 N 1.28442 * 125.18912 * 2 1
4 4 C 1.30863 * 110.92365 * 180.02562 * 3 2 1
5 5 C 1.50705 * 126.06495 * 180.02562 * 4 3 2
6 6 F 1.39897 * 109.47000 * 119.97393 * 5 4 3
7 7 F 1.39910 * 109.46619 * 239.96954 * 5 4 3
8 8 C 1.39672 * 107.86363 * 359.76873 * 4 3 2
9 9 C 1.36593 * 125.18921 * 180.02562 * 2 1 3
10 10 C 1.47159 * 126.88419 * 359.94771 * 9 2 1
11 11 O 1.21635 * 120.00291 * 5.17906 * 10 9 2
12 12 N 1.34778 * 120.00196 * 185.17905 * 10 9 2
13 13 C 1.46497 * 120.00177 * 184.25167 * 12 10 9
14 14 C 1.53004 * 109.47310 * 180.02562 * 13 12 10
15 15 H 1.08994 * 110.88587 * 57.42030 * 14 13 12
16 16 C 1.54915 * 110.99887 * 293.54158 * 14 13 12
17 17 N 1.47429 * 104.83082 * 204.87776 * 16 14 13
18 18 C 1.36936 * 125.64728 * 204.09305 * 17 16 14
19 19 H 1.07999 * 119.99952 * 348.51053 * 18 17 16
20 20 C 1.38810 * 119.99854 * 168.50482 * 18 17 16
21 21 N 1.31624 * 120.00131 * 153.31551 * 20 18 17
22 22 Si 1.86799 * 120.00406 * 333.32124 * 20 18 17
23 23 H 1.48494 * 109.47438 * 85.31014 * 22 20 18
24 24 H 1.48511 * 109.46654 * 325.30998 * 22 20 18
25 25 H 1.48502 * 109.47207 * 205.31445 * 22 20 18
26 26 C 1.47016 * 108.70299 * 24.35580 * 17 16 14
27 27 C 1.54343 * 107.26650 * 358.58785 * 26 17 16
28 28 H 1.09003 * 110.84860 * 219.67150 * 27 26 17
29 29 O 1.42900 * 110.66745 * 96.52090 * 27 26 17
30 30 H 1.08996 * 109.46786 * 269.12646 * 1 2 3
31 31 H 1.09001 * 109.47037 * 29.12166 * 1 2 3
32 32 H 1.08994 * 109.46931 * 149.12190 * 1 2 3
33 33 H 1.08994 * 109.47226 * 359.97093 * 5 4 3
34 34 H 1.07999 * 127.31978 * 180.27355 * 8 4 3
35 35 H 0.97001 * 120.00076 * 4.24529 * 12 10 9
36 36 H 1.09002 * 109.47518 * 60.00017 * 13 12 10
37 37 H 1.09000 * 109.47231 * 299.99583 * 13 12 10
38 38 H 1.08999 * 110.36293 * 86.04142 * 16 14 13
39 39 H 1.08999 * 110.45965 * 323.76312 * 16 14 13
40 40 H 0.97004 * 119.99487 * 5.07533 * 21 20 18
41 41 H 1.09004 * 109.88035 * 118.12869 * 26 17 16
42 42 H 1.09003 * 109.88761 * 239.29429 * 26 17 16
43 43 H 0.96705 * 113.99931 * 66.41327 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 7 2.2052 1.0497 0.0000
4 6 3.4735 0.7272 -0.0005
5 6 4.6336 1.6893 -0.0002
6 9 5.4134 1.4789 1.1420
7 9 5.4136 1.4795 -1.1426
8 6 3.5612 -0.6667 0.0044
9 6 2.2522 -1.1163 -0.0005
10 6 1.7993 -2.5165 -0.0001
11 8 0.6139 -2.7723 -0.0942
12 7 2.6979 -3.5155 0.1047
13 6 2.2576 -4.9096 0.0116
14 6 3.4651 -5.8370 0.1623
15 1 3.9793 -5.6553 1.1060
16 6 4.4346 -5.6853 -1.0365
17 7 5.1581 -6.9682 -1.1014
18 6 6.3938 -7.1602 -1.6594
19 1 6.8408 -6.3833 -2.2619
20 6 7.0719 -8.3533 -1.4505
21 7 7.9479 -8.7764 -2.3371
22 14 6.7411 -9.3585 0.0888
23 1 5.5665 -10.2384 -0.1374
24 1 6.4636 -8.4450 1.2264
25 1 7.9304 -10.1911 0.4014
26 6 4.3305 -8.0085 -0.4734
27 6 3.0439 -7.3249 0.0359
28 1 2.7493 -7.7260 1.0056
29 8 1.9853 -7.4719 -0.9128
30 1 -0.3633 -0.0157 1.0275
31 1 -0.3633 0.8978 -0.5001
32 1 -0.3633 -0.8820 -0.5274
33 1 4.2573 2.7122 0.0001
34 1 4.4595 -1.2663 0.0095
35 1 3.6363 -3.3114 0.2417
36 1 1.7880 -5.0784 -0.9574
37 1 1.5392 -5.1175 0.8047
38 1 5.1309 -4.8656 -0.8598
39 1 3.8774 -5.5170 -1.9581
40 1 8.1740 -8.2202 -3.0990
41 1 4.0799 -8.7754 -1.2063
42 1 4.8676 -8.4543 0.3639
43 1 1.6851 -8.3838 -1.0289
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000958254416.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:57
Heat of formation + Delta-G solvation = -68.719346 kcal
Electronic energy + Delta-G solvation = -30190.920133 eV
Core-core repulsion = 25524.060975 eV
Total energy + Delta-G solvation = -4666.859158 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.145 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-49.25496 -47.26769 -43.06497 -39.78137 -38.63427 -35.38930 -34.98139 -34.05443
-32.52889 -31.65252 -30.06088 -29.06117 -28.15292 -26.07977 -25.58403 -23.90221
-22.77963 -21.42909 -21.03192 -20.29777 -19.87468 -18.47822 -17.84444 -17.61748
-17.61166 -16.89029 -16.63294 -16.59187 -16.35786 -15.67704 -15.34512 -15.17555
-14.49470 -14.41554 -14.17368 -14.04186 -13.83148 -13.63066 -13.56222 -13.27759
-13.21871 -13.13019 -12.97347 -12.79688 -12.44208 -11.90096 -11.88005 -11.28690
-11.23397 -11.18826 -10.93011 -10.64236 -10.60514 -10.25737 -9.90140 -9.78866
-9.55879 -9.51592 -9.22192 -9.18128 -8.48249 -7.17858 -6.38282 -3.24672
0.83933 1.78275 1.81708 2.84188 2.89941 3.30722 3.32578 3.43137
3.61752 3.79907 4.02781 4.28179 4.36402 4.49369 4.52975 4.69534
4.71446 4.77426 4.81796 4.97148 4.99403 5.04203 5.09819 5.15061
5.26552 5.40081 5.51277 5.62568 5.71032 5.78229 5.98416 6.03931
6.13886 6.18846 6.29276 6.33850 6.53662 6.70489 7.16668 7.42343
7.63391 7.82325 7.86732 8.28513 8.97879 9.53068 10.19220 11.09514
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.012241 B = 0.002834 C = 0.002409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2286.897869 B = 9876.907080 C =11620.990512
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.081 3.919
2 N -0.244 5.244
3 N -0.242 5.242
4 C -0.059 4.059
5 C 0.364 3.636
6 F -0.191 7.191
7 F -0.190 7.190
8 C -0.149 4.149
9 C -0.030 4.030
10 C 0.591 3.409
11 O -0.540 6.540
12 N -0.706 5.706
13 C 0.142 3.858
14 C -0.115 4.115
15 H 0.095 0.905
16 C 0.143 3.857
17 N -0.605 5.605
18 C -0.332 4.332
19 H 0.077 0.923
20 C -0.019 4.019
21 N -0.916 5.916
22 Si 1.070 2.930
23 H -0.295 1.295
24 H -0.293 1.293
25 H -0.298 1.298
26 C 0.090 3.910
27 C 0.103 3.897
28 H 0.066 0.934
29 O -0.558 6.558
30 H 0.089 0.911
31 H 0.097 0.903
32 H 0.117 0.883
33 H 0.128 0.872
34 H 0.170 0.830
35 H 0.406 0.594
36 H 0.086 0.914
37 H 0.071 0.929
38 H 0.044 0.956
39 H 0.033 0.967
40 H 0.264 0.736
41 H 0.047 0.953
42 H 0.033 0.967
43 H 0.378 0.622
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.525 17.905 8.051 24.421
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.033 5.033
3 N -0.078 5.078
4 C -0.215 4.215
5 C 0.308 3.692
6 F -0.172 7.172
7 F -0.171 7.171
8 C -0.178 4.178
9 C -0.157 4.157
10 C 0.376 3.624
11 O -0.418 6.418
12 N -0.357 5.357
13 C 0.019 3.981
14 C -0.135 4.135
15 H 0.113 0.887
16 C 0.017 3.983
17 N -0.332 5.332
18 C -0.459 4.459
19 H 0.094 0.906
20 C -0.221 4.221
21 N -0.556 5.556
22 Si 0.904 3.096
23 H -0.223 1.223
24 H -0.221 1.221
25 H -0.226 1.226
26 C -0.035 4.035
27 C 0.043 3.957
28 H 0.084 0.916
29 O -0.364 6.364
30 H 0.107 0.893
31 H 0.116 0.884
32 H 0.136 0.864
33 H 0.145 0.855
34 H 0.187 0.813
35 H 0.241 0.759
36 H 0.104 0.896
37 H 0.089 0.911
38 H 0.062 0.938
39 H 0.050 0.950
40 H 0.074 0.926
41 H 0.064 0.936
42 H 0.050 0.950
43 H 0.226 0.774
Dipole moment (debyes) X Y Z Total
from point charges -15.656 17.797 8.625 25.224
hybrid contribution 0.725 0.170 -0.595 0.953
sum -14.931 17.967 8.030 24.703
Atomic orbital electron populations
1.22524 0.71483 1.06565 1.05278 1.45636 1.08185 1.01420 1.48035
1.72989 1.02732 1.13950 1.18092 1.22211 0.92551 0.94559 1.12178
1.19100 0.80457 0.98073 0.71552 1.93042 1.76611 1.96578 1.50994
1.93056 1.76557 1.96574 1.50922 1.22119 0.96447 0.94097 1.05126
1.21477 0.90813 0.90116 1.13325 1.16742 0.85805 0.82716 0.77143
1.90788 1.15956 1.84328 1.50745 1.45786 1.11155 1.06449 1.72324
1.21256 0.96238 0.77100 1.03501 1.22782 0.96047 0.93221 1.01431
0.88729 1.21679 0.92558 0.90012 0.94028 1.44648 1.16895 1.01910
1.69748 1.20011 0.93132 1.04982 1.27823 0.90562 1.25818 0.97129
0.96328 1.02783 1.70917 1.38178 1.35077 1.11474 0.83680 0.74524
0.75103 0.76276 1.22305 1.22131 1.22633 1.22391 0.91058 0.93455
0.96643 1.22680 0.87076 0.94935 0.91028 0.91575 1.86446 1.53406
1.32725 1.63775 0.89263 0.88428 0.86426 0.85498 0.81252 0.75906
0.89606 0.91121 0.93812 0.94970 0.92577 0.93552 0.94953 0.77436
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.61 10.86 59.85 0.65 1.26 16
2 N -0.24 -2.64 3.75 -63.88 -0.24 -2.88 16
3 N -0.24 -2.66 11.90 33.64 0.40 -2.26 16
4 C -0.06 -0.63 6.65 -82.47 -0.55 -1.18 16
5 C 0.36 3.24 5.80 36.01 0.21 3.45 16
6 F -0.19 -1.94 17.32 2.25 0.04 -1.90 16
7 F -0.19 -2.01 17.32 2.25 0.04 -1.97 16
8 C -0.15 -1.63 10.43 -38.99 -0.41 -2.04 16
9 C -0.03 -0.34 6.96 -82.06 -0.57 -0.92 16
10 C 0.59 7.50 7.79 -12.64 -0.10 7.40 16
11 O -0.54 -7.91 14.69 5.25 0.08 -7.83 16
12 N -0.71 -8.36 5.39 -61.47 -0.33 -8.69 16
13 C 0.14 1.87 4.74 -4.04 -0.02 1.85 16
14 C -0.11 -1.71 3.04 -88.47 -0.27 -1.97 16
15 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16
16 C 0.14 2.71 6.40 -2.52 -0.02 2.69 16
17 N -0.60 -14.33 3.27 -170.06 -0.56 -14.88 16
18 C -0.33 -9.34 10.42 -15.06 -0.16 -9.50 16
19 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16
20 C -0.02 -0.56 5.43 -17.43 -0.09 -0.66 16
21 N -0.92 -28.34 13.70 55.49 0.76 -27.58 16
22 Si 1.07 26.04 24.71 -169.99 -4.20 21.84 16
23 H -0.29 -6.70 6.83 56.52 0.39 -6.31 16
24 H -0.29 -6.71 6.78 56.52 0.38 -6.33 16
25 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16
26 C 0.09 1.85 4.79 -3.06 -0.01 1.83 16
27 C 0.10 1.59 4.09 -24.89 -0.10 1.49 16
28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
29 O -0.56 -8.11 12.09 -35.23 -0.43 -8.53 16
30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.12 1.00 6.26 -51.93 -0.33 0.67 16
33 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16
34 H 0.17 1.55 7.61 -52.49 -0.40 1.15 16
35 H 0.41 4.18 7.40 -40.82 -0.30 3.88 16
36 H 0.09 1.30 7.43 -51.93 -0.39 0.91 16
37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16
39 H 0.03 0.65 8.01 -51.93 -0.42 0.23 16
40 H 0.26 8.09 8.73 -40.82 -0.36 7.74 16
41 H 0.05 1.00 7.98 -51.93 -0.41 0.59 16
42 H 0.03 0.70 3.54 -51.93 -0.18 0.52 16
43 H 0.38 4.00 9.12 45.56 0.42 4.41 16
LS Contribution 363.40 15.07 5.48 5.48
Total: -1.00 -35.53 363.40 -4.98 -40.51
By element:
Atomic # 1 Polarization: 9.57 SS G_CDS: -4.58 Total: 5.00 kcal
Atomic # 6 Polarization: 5.14 SS G_CDS: -1.44 Total: 3.70 kcal
Atomic # 7 Polarization: -56.32 SS G_CDS: 0.03 Total: -56.28 kcal
Atomic # 8 Polarization: -16.02 SS G_CDS: -0.35 Total: -16.37 kcal
Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.87 kcal
Atomic # 14 Polarization: 26.04 SS G_CDS: -4.20 Total: 21.84 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -35.53 -4.98 -40.51 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000958254416.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.211 kcal
(2) G-P(sol) polarization free energy of solvation -35.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds