Wall clock time and date at job start Sat Apr 11 2020 07:07:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 N 1.28442 * 125.18912 * 2 1
4 4 C 1.30863 * 110.92365 * 180.02562 * 3 2 1
5 5 C 1.50705 * 126.06495 * 180.02562 * 4 3 2
6 6 F 1.39897 * 109.47000 * 119.97393 * 5 4 3
7 7 F 1.39910 * 109.46619 * 239.96954 * 5 4 3
8 8 C 1.39672 * 107.86363 * 359.76873 * 4 3 2
9 9 C 1.36593 * 125.18921 * 180.02562 * 2 1 3
10 10 C 1.47159 * 126.88419 * 359.94771 * 9 2 1
11 11 O 1.21635 * 120.00291 * 5.17906 * 10 9 2
12 12 N 1.34778 * 120.00196 * 185.17905 * 10 9 2
13 13 C 1.46497 * 120.00177 * 184.25167 * 12 10 9
14 14 C 1.53004 * 109.47310 * 180.02562 * 13 12 10
15 15 H 1.08994 * 110.88587 * 57.42030 * 14 13 12
16 16 C 1.54915 * 110.99887 * 293.54158 * 14 13 12
17 17 N 1.47429 * 104.83082 * 204.87776 * 16 14 13
18 18 C 1.36936 * 125.64728 * 204.09305 * 17 16 14
19 19 H 1.07999 * 119.99952 * 348.51053 * 18 17 16
20 20 C 1.38810 * 119.99854 * 168.50482 * 18 17 16
21 21 N 1.31624 * 120.00131 * 153.31551 * 20 18 17
22 22 Si 1.86799 * 120.00406 * 333.32124 * 20 18 17
23 23 H 1.48494 * 109.47438 * 85.31014 * 22 20 18
24 24 H 1.48511 * 109.46654 * 325.30998 * 22 20 18
25 25 H 1.48502 * 109.47207 * 205.31445 * 22 20 18
26 26 C 1.47016 * 108.70299 * 24.35580 * 17 16 14
27 27 C 1.54343 * 107.26650 * 358.58785 * 26 17 16
28 28 H 1.09003 * 110.84860 * 219.67150 * 27 26 17
29 29 O 1.42900 * 110.66745 * 96.52090 * 27 26 17
30 30 H 1.08996 * 109.46786 * 269.12646 * 1 2 3
31 31 H 1.09001 * 109.47037 * 29.12166 * 1 2 3
32 32 H 1.08994 * 109.46931 * 149.12190 * 1 2 3
33 33 H 1.08994 * 109.47226 * 359.97093 * 5 4 3
34 34 H 1.07999 * 127.31978 * 180.27355 * 8 4 3
35 35 H 0.97001 * 120.00076 * 4.24529 * 12 10 9
36 36 H 1.09002 * 109.47518 * 60.00017 * 13 12 10
37 37 H 1.09000 * 109.47231 * 299.99583 * 13 12 10
38 38 H 1.08999 * 110.36293 * 86.04142 * 16 14 13
39 39 H 1.08999 * 110.45965 * 323.76312 * 16 14 13
40 40 H 0.97004 * 119.99487 * 5.07533 * 21 20 18
41 41 H 1.09004 * 109.88035 * 118.12869 * 26 17 16
42 42 H 1.09003 * 109.88761 * 239.29429 * 26 17 16
43 43 H 0.96705 * 113.99931 * 66.41327 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 7 2.2052 1.0497 0.0000
4 6 3.4735 0.7272 -0.0005
5 6 4.6336 1.6893 -0.0002
6 9 5.4134 1.4789 1.1420
7 9 5.4136 1.4795 -1.1426
8 6 3.5612 -0.6667 0.0044
9 6 2.2522 -1.1163 -0.0005
10 6 1.7993 -2.5165 -0.0001
11 8 0.6139 -2.7723 -0.0942
12 7 2.6979 -3.5155 0.1047
13 6 2.2576 -4.9096 0.0116
14 6 3.4651 -5.8370 0.1623
15 1 3.9793 -5.6553 1.1060
16 6 4.4346 -5.6853 -1.0365
17 7 5.1581 -6.9682 -1.1014
18 6 6.3938 -7.1602 -1.6594
19 1 6.8408 -6.3833 -2.2619
20 6 7.0719 -8.3533 -1.4505
21 7 7.9479 -8.7764 -2.3371
22 14 6.7411 -9.3585 0.0888
23 1 5.5665 -10.2384 -0.1374
24 1 6.4636 -8.4450 1.2264
25 1 7.9304 -10.1911 0.4014
26 6 4.3305 -8.0085 -0.4734
27 6 3.0439 -7.3249 0.0359
28 1 2.7493 -7.7260 1.0056
29 8 1.9853 -7.4719 -0.9128
30 1 -0.3633 -0.0157 1.0275
31 1 -0.3633 0.8978 -0.5001
32 1 -0.3633 -0.8820 -0.5274
33 1 4.2573 2.7122 0.0001
34 1 4.4595 -1.2663 0.0095
35 1 3.6363 -3.3114 0.2417
36 1 1.7880 -5.0784 -0.9574
37 1 1.5392 -5.1175 0.8047
38 1 5.1309 -4.8656 -0.8598
39 1 3.8774 -5.5170 -1.9581
40 1 8.1740 -8.2202 -3.0990
41 1 4.0799 -8.7754 -1.2063
42 1 4.8676 -8.4543 0.3639
43 1 1.6851 -8.3838 -1.0289
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000958254416.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:56
Heat of formation + Delta-G solvation = -97.991862 kcal
Electronic energy + Delta-G solvation = -30192.189484 eV
Core-core repulsion = 25524.060975 eV
Total energy + Delta-G solvation = -4668.128510 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.145 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-50.00224 -48.02614 -43.87530 -40.87075 -39.92358 -36.55700 -36.35757 -34.87213
-34.25449 -32.82440 -31.42378 -29.75186 -29.63984 -27.50878 -26.35158 -25.28872
-23.90448 -22.66511 -22.23512 -21.48227 -20.98996 -19.73680 -19.33308 -18.37320
-18.34574 -18.30459 -17.44803 -17.43254 -17.22438 -17.19760 -16.38467 -16.23467
-15.97642 -15.56281 -15.33672 -15.11930 -14.93967 -14.87951 -14.61453 -14.41965
-14.39849 -14.00382 -13.99294 -13.82576 -13.46995 -13.33773 -13.05459 -12.70649
-12.65562 -12.41813 -12.18431 -12.03469 -11.92265 -11.61841 -11.36726 -11.14773
-10.92692 -10.64461 -10.51907 -10.37436 -10.16341 -9.19687 -8.65127 -5.44276
-0.03403 0.96625 1.06482 1.38373 1.52444 1.71808 1.91771 1.97730
2.52857 2.55538 2.99604 3.14973 3.17050 3.23359 3.35836 3.52159
3.68505 3.77510 3.86168 3.89267 4.00848 4.01117 4.25102 4.27878
4.29402 4.33465 4.47052 4.50662 4.61641 4.62827 4.72525 4.84573
4.94336 4.98147 5.05254 5.21478 5.30681 5.37216 5.57099 6.08831
6.23138 6.60157 6.81336 6.87634 6.92059 7.47041 8.11446 8.82811
Molecular weight = 344.14amu
Principal moments of inertia in cm(-1)
A = 0.012241 B = 0.002834 C = 0.002409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2286.897869 B = 9876.907080 C =11620.990512
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.246 5.246
3 N -0.243 5.243
4 C -0.070 4.070
5 C 0.364 3.636
6 F -0.199 7.199
7 F -0.201 7.201
8 C -0.155 4.155
9 C -0.044 4.044
10 C 0.594 3.406
11 O -0.562 6.562
12 N -0.701 5.701
13 C 0.156 3.844
14 C -0.099 4.099
15 H 0.116 0.884
16 C 0.139 3.861
17 N -0.627 5.627
18 C -0.324 4.324
19 H 0.040 0.960
20 C -0.079 4.079
21 N -0.954 5.954
22 Si 1.113 2.887
23 H -0.269 1.269
24 H -0.265 1.265
25 H -0.309 1.309
26 C 0.077 3.923
27 C 0.115 3.885
28 H 0.111 0.889
29 O -0.567 6.567
30 H 0.104 0.896
31 H 0.119 0.881
32 H 0.107 0.893
33 H 0.163 0.837
34 H 0.181 0.819
35 H 0.413 0.587
36 H 0.066 0.934
37 H 0.086 0.914
38 H 0.047 0.953
39 H 0.017 0.983
40 H 0.247 0.753
41 H 0.031 0.969
42 H 0.036 0.964
43 H 0.396 0.604
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.674 18.581 10.542 27.100
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.035 5.035
3 N -0.079 5.079
4 C -0.226 4.226
5 C 0.309 3.691
6 F -0.180 7.180
7 F -0.183 7.183
8 C -0.183 4.183
9 C -0.172 4.172
10 C 0.379 3.621
11 O -0.441 6.441
12 N -0.352 5.352
13 C 0.032 3.968
14 C -0.119 4.119
15 H 0.134 0.866
16 C 0.014 3.986
17 N -0.354 5.354
18 C -0.452 4.452
19 H 0.058 0.942
20 C -0.273 4.273
21 N -0.597 5.597
22 Si 0.940 3.060
23 H -0.195 1.195
24 H -0.192 1.192
25 H -0.238 1.238
26 C -0.047 4.047
27 C 0.054 3.946
28 H 0.128 0.872
29 O -0.376 6.376
30 H 0.122 0.878
31 H 0.138 0.862
32 H 0.126 0.874
33 H 0.180 0.820
34 H 0.198 0.802
35 H 0.250 0.750
36 H 0.084 0.916
37 H 0.104 0.896
38 H 0.065 0.935
39 H 0.035 0.965
40 H 0.056 0.944
41 H 0.049 0.951
42 H 0.053 0.947
43 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -17.852 18.501 11.118 28.011
hybrid contribution 1.352 0.061 -1.498 2.019
sum -16.500 18.562 9.620 26.634
Atomic orbital electron populations
1.22735 0.69968 1.07179 1.06407 1.45973 1.09144 1.01071 1.47345
1.72979 1.02882 1.14008 1.18035 1.22542 0.93041 0.94892 1.12134
1.19443 0.79584 0.99320 0.70747 1.93023 1.76837 1.96713 1.51434
1.93032 1.76888 1.96724 1.51622 1.22380 0.96710 0.94589 1.04650
1.21399 0.91337 0.89924 1.14527 1.16827 0.85489 0.83152 0.76590
1.90777 1.16822 1.84714 1.51818 1.45696 1.11547 1.05964 1.72038
1.21031 0.95476 0.77280 1.02989 1.22695 0.95469 0.93657 1.00051
0.86552 1.21761 0.93057 0.88255 0.95534 1.44736 1.15953 1.04929
1.69803 1.19893 0.94920 1.03822 1.26587 0.94201 1.27187 0.96974
0.98324 1.04770 1.71047 1.40663 1.35717 1.12287 0.83173 0.74959
0.74591 0.73278 1.19499 1.19153 1.23766 1.22661 0.93106 0.92971
0.96009 1.22672 0.84887 0.94406 0.92592 0.87180 1.86431 1.52652
1.34565 1.63903 0.87801 0.86231 0.87445 0.81958 0.80153 0.74995
0.91574 0.89576 0.93500 0.96510 0.94360 0.95111 0.94699 0.75359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.01 10.86 127.77 1.39 2.40 16
2 N -0.25 -4.94 3.75 -356.03 -1.33 -6.27 16
3 N -0.24 -4.92 11.90 -47.49 -0.57 -5.49 16
4 C -0.07 -1.41 6.65 43.05 0.29 -1.13 16
5 C 0.36 5.89 5.80 71.24 0.41 6.30 16
6 F -0.20 -3.76 17.32 44.97 0.78 -2.98 16
7 F -0.20 -4.05 17.32 44.97 0.78 -3.28 16
8 C -0.15 -3.19 10.43 22.66 0.24 -2.96 16
9 C -0.04 -0.97 6.96 40.79 0.28 -0.69 16
10 C 0.59 14.19 7.79 86.59 0.67 14.86 16
11 O -0.56 -15.68 14.69 -4.14 -0.06 -15.74 16
12 N -0.70 -15.21 5.39 -466.62 -2.51 -17.72 16
13 C 0.16 3.68 4.74 86.38 0.41 4.08 16
14 C -0.10 -2.62 3.04 -9.40 -0.03 -2.65 16
15 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16
16 C 0.14 5.12 6.40 86.86 0.56 5.68 16
17 N -0.63 -29.34 3.27 -691.94 -2.26 -31.61 16
18 C -0.32 -18.64 10.42 84.03 0.88 -17.76 16
19 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16
20 C -0.08 -4.63 5.43 84.86 0.46 -4.17 16
21 N -0.95 -61.14 13.70 21.65 0.30 -60.84 16
22 Si 1.11 51.77 24.71 68.60 1.70 53.47 16
23 H -0.27 -11.26 6.83 99.48 0.68 -10.58 16
24 H -0.27 -11.03 6.78 99.48 0.67 -10.36 16
25 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16
26 C 0.08 2.99 4.79 86.74 0.42 3.41 16
27 C 0.11 3.09 4.09 31.79 0.13 3.22 16
28 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16
29 O -0.57 -14.72 12.09 -148.98 -1.80 -16.52 16
30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16
31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16
32 H 0.11 1.71 6.26 -2.39 -0.01 1.70 16
33 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16
34 H 0.18 3.11 7.61 -2.91 -0.02 3.08 16
35 H 0.41 7.70 7.40 -92.71 -0.69 7.01 16
36 H 0.07 1.88 7.43 -2.39 -0.02 1.86 16
37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
39 H 0.02 0.68 8.01 -2.39 -0.02 0.66 16
40 H 0.25 16.02 8.73 -92.70 -0.81 15.21 16
41 H 0.03 1.28 7.98 -2.39 -0.02 1.26 16
42 H 0.04 1.37 3.54 -2.39 -0.01 1.36 16
43 H 0.40 7.08 9.12 -74.05 -0.68 6.41 16
Total: -1.00 -79.34 363.40 0.74 -78.60
By element:
Atomic # 1 Polarization: 18.16 SS G_CDS: -0.37 Total: 17.79 kcal
Atomic # 6 Polarization: 4.50 SS G_CDS: 6.10 Total: 10.60 kcal
Atomic # 7 Polarization: -115.55 SS G_CDS: -6.38 Total: -121.93 kcal
Atomic # 8 Polarization: -30.40 SS G_CDS: -1.86 Total: -32.27 kcal
Atomic # 9 Polarization: -7.81 SS G_CDS: 1.56 Total: -6.26 kcal
Atomic # 14 Polarization: 51.77 SS G_CDS: 1.70 Total: 53.47 kcal
Total: -79.34 0.74 -78.60 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000958254416.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.388 kcal
(2) G-P(sol) polarization free energy of solvation -79.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.731 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.604 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.992 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds