Wall clock time and date at job start Sat Apr 11 2020 07:09:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35559 * 116.99919 * 2 1
4 4 C 1.46694 * 127.03538 * 90.00361 * 3 2 1
5 5 C 1.39575 * 134.08519 * 359.97438 * 4 3 2
6 6 C 1.36668 * 119.73284 * 179.97438 * 5 4 3
7 7 C 1.38801 * 120.41133 * 0.02562 * 6 5 4
8 8 C 1.37803 * 120.71709 * 359.97438 * 7 6 5
9 9 C 1.39050 * 119.86787 * 359.97438 * 8 7 6
10 10 O 1.34760 * 133.07470 * 180.02562 * 9 8 7
11 11 C 1.35216 * 110.96852 * 179.75220 * 10 9 8
12 12 C 1.46186 * 125.23790 * 180.24731 * 11 10 9
13 13 O 1.21746 * 120.00448 * 180.17123 * 12 11 10
14 14 N 1.34783 * 119.99403 * 0.16698 * 12 11 10
15 15 C 1.47018 * 125.64999 * 0.02862 * 14 12 11
16 16 C 1.54324 * 107.27304 * 181.02162 * 15 14 12
17 17 C 1.55157 * 102.93971 * 22.19087 * 16 15 14
18 18 H 1.09007 * 111.00272 * 82.61226 * 17 16 15
19 19 N 1.46501 * 111.00455 * 206.42474 * 17 16 15
20 20 C 1.46494 * 120.00087 * 60.00076 * 19 17 16
21 21 C 1.36943 * 120.00053 * 240.00078 * 19 17 16
22 22 H 1.08005 * 119.99927 * 23.24935 * 21 19 17
23 23 C 1.38809 * 120.00351 * 203.24392 * 21 19 17
24 24 N 1.31621 * 119.99682 * 13.77037 * 23 21 19
25 25 Si 1.86793 * 120.00532 * 193.76667 * 23 21 19
26 26 H 1.48509 * 109.46983 * 0.02562 * 25 23 21
27 27 H 1.48499 * 109.47270 * 119.99814 * 25 23 21
28 28 H 1.48494 * 109.47472 * 240.00640 * 25 23 21
29 29 C 1.47421 * 125.64652 * 179.71898 * 14 12 11
30 30 H 1.08998 * 109.47322 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47397 * 299.99743 * 1 2 3
32 32 H 1.09000 * 109.47212 * 59.99697 * 1 2 3
33 33 H 1.08002 * 120.13499 * 359.93577 * 5 4 3
34 34 H 1.08000 * 119.79723 * 180.02562 * 6 5 4
35 35 H 1.08001 * 119.63916 * 179.97438 * 7 6 5
36 36 H 1.08003 * 120.06565 * 180.02562 * 8 7 6
37 37 H 1.08997 * 109.88193 * 300.43974 * 15 14 12
38 38 H 1.08996 * 109.88775 * 61.45100 * 15 14 12
39 39 H 1.08994 * 110.72496 * 140.55495 * 16 15 14
40 40 H 1.09001 * 110.71979 * 263.65723 * 16 15 14
41 41 H 1.09002 * 109.46922 * 95.16061 * 20 19 17
42 42 H 1.08999 * 109.47075 * 215.16034 * 20 19 17
43 43 H 1.08998 * 109.47274 * 335.15745 * 20 19 17
44 44 H 0.97005 * 120.00333 * 179.97438 * 24 23 21
45 45 H 1.09004 * 110.36890 * 274.74814 * 29 14 12
46 46 H 1.09001 * 110.36854 * 37.06803 * 29 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0444 1.2079 0.0000
4 6 2.4456 1.9951 1.1710
5 6 2.3475 1.8033 2.5500
6 6 2.8329 2.7545 3.4029
7 6 3.4218 3.9090 2.9060
8 6 3.5280 4.1165 1.5478
9 6 3.0419 3.1619 0.6614
10 8 3.0057 3.0889 -0.6838
11 6 2.4251 1.9374 -1.0904
12 6 2.2296 1.5373 -2.4828
13 8 1.6908 0.4767 -2.7415
14 7 2.6460 2.3426 -3.4801
15 6 3.3086 3.6440 -3.3106
16 6 3.5755 4.2096 -4.7215
17 6 2.5407 3.4569 -5.5990
18 1 1.5630 3.9363 -5.5480
19 7 3.0018 3.3574 -6.9859
20 6 4.2575 2.6680 -7.2927
21 6 2.2591 3.9087 -7.9957
22 1 1.5685 4.7112 -7.7820
23 6 2.3937 3.4364 -9.2940
24 7 3.0163 2.2988 -9.5191
25 14 1.6912 4.4149 -10.7216
26 1 1.0447 5.6484 -10.2057
27 1 2.7857 4.7837 -11.6551
28 1 0.6852 3.5913 -11.4389
29 6 2.5180 2.0615 -4.9216
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8899
33 1 1.8892 0.9071 2.9416
34 1 2.7579 2.6069 4.4701
35 1 3.8009 4.6527 3.5913
36 1 3.9885 5.0186 1.1727
37 1 2.6589 4.3214 -2.7565
38 1 4.2499 3.5140 -2.7768
39 1 3.3939 5.2840 -4.7470
40 1 4.5928 3.9841 -5.0413
41 1 4.0471 1.6337 -7.5648
42 1 4.7532 3.1689 -8.1242
43 1 4.9065 2.6885 -6.4172
44 1 3.1101 1.9684 -10.4263
45 1 3.3567 1.4564 -5.2661
46 1 1.5746 1.5557 -5.1273
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000972071802.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:09:04
Heat of formation + Delta-G solvation = 2.270224 kcal
Electronic energy + Delta-G solvation = -30154.729408 eV
Core-core repulsion = 26012.885368 eV
Total energy + Delta-G solvation = -4141.844041 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-42.76200 -39.71773 -38.52456 -38.16228 -37.33880 -34.84862 -32.37839 -31.79573
-30.73301 -30.08957 -29.60775 -27.99150 -27.13776 -26.08953 -24.79228 -23.24618
-22.89038 -22.26826 -21.43641 -19.86456 -19.35564 -18.31477 -17.85594 -17.13910
-16.81434 -16.65664 -15.89153 -15.75134 -15.55415 -15.16532 -15.07165 -14.72561
-14.63763 -14.12573 -14.07205 -13.48688 -13.39292 -13.17184 -12.75401 -12.65429
-12.48355 -12.40270 -12.38379 -12.00725 -11.99144 -11.52984 -11.40171 -10.94613
-10.82094 -10.53137 -10.52230 -10.33170 -10.28370 -10.20097 -10.02592 -9.89574
-9.82533 -9.02110 -8.65835 -8.57252 -8.27702 -6.83581 -5.79121 -3.27271
0.24598 0.97425 1.45863 2.20466 3.04083 3.04653 3.27896 3.34982
3.42419 3.44362 3.49983 4.09659 4.41056 4.44057 4.55621 4.69207
4.87232 4.91259 4.98023 5.02578 5.10964 5.23874 5.26100 5.28933
5.32579 5.51737 5.53241 5.56016 5.63815 5.77961 5.81787 5.89627
5.93033 6.00584 6.05531 6.16976 6.26856 6.35418 6.45083 6.56478
6.71110 6.74461 6.84074 7.19416 7.30015 7.59544 7.67819 7.75794
8.11333 8.32299 9.15367 9.77600 10.26474 11.25122
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.020914 B = 0.002475 C = 0.002306
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1338.491716 B =11312.127033 C =12140.372409
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.291 6.291
3 C 0.088 3.912
4 C -0.156 4.156
5 C -0.054 4.054
6 C -0.140 4.140
7 C -0.083 4.083
8 C -0.109 4.109
9 C 0.075 3.925
10 O -0.168 6.168
11 C -0.028 4.028
12 C 0.602 3.398
13 O -0.510 6.510
14 N -0.600 5.600
15 C 0.105 3.895
16 C -0.153 4.153
17 C 0.174 3.826
18 H 0.080 0.920
19 N -0.584 5.584
20 C 0.157 3.843
21 C -0.261 4.261
22 H 0.071 0.929
23 C 0.005 3.995
24 N -0.902 5.902
25 Si 0.907 3.093
26 H -0.277 1.277
27 H -0.289 1.289
28 H -0.290 1.290
29 C 0.088 3.912
30 H 0.099 0.901
31 H 0.044 0.956
32 H 0.053 0.947
33 H 0.130 0.870
34 H 0.132 0.868
35 H 0.138 0.862
36 H 0.138 0.862
37 H 0.067 0.933
38 H 0.065 0.935
39 H 0.077 0.923
40 H 0.077 0.923
41 H 0.034 0.966
42 H 0.043 0.957
43 H 0.003 0.997
44 H 0.254 0.746
45 H 0.073 0.927
46 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.020 2.819 26.107 26.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.206 6.206
3 C 0.039 3.961
4 C -0.157 4.157
5 C -0.072 4.072
6 C -0.158 4.158
7 C -0.101 4.101
8 C -0.128 4.128
9 C 0.027 3.973
10 O -0.069 6.069
11 C -0.079 4.079
12 C 0.389 3.611
13 O -0.387 6.387
14 N -0.332 5.332
15 C -0.018 4.018
16 C -0.193 4.193
17 C 0.063 3.937
18 H 0.098 0.902
19 N -0.304 5.304
20 C 0.013 3.987
21 C -0.391 4.391
22 H 0.089 0.911
23 C -0.194 4.194
24 N -0.546 5.546
25 Si 0.737 3.263
26 H -0.202 1.202
27 H -0.215 1.215
28 H -0.217 1.217
29 C -0.036 4.036
30 H 0.118 0.882
31 H 0.063 0.937
32 H 0.072 0.928
33 H 0.148 0.852
34 H 0.150 0.850
35 H 0.156 0.844
36 H 0.156 0.844
37 H 0.086 0.914
38 H 0.084 0.916
39 H 0.096 0.904
40 H 0.096 0.904
41 H 0.052 0.948
42 H 0.061 0.939
43 H 0.021 0.979
44 H 0.064 0.936
45 H 0.092 0.908
46 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -0.069 2.146 25.584 25.674
hybrid contribution -0.432 0.448 -0.696 0.933
sum -0.501 2.594 24.888 25.027
Atomic orbital electron populations
1.23063 0.77947 1.03779 1.00764 1.85952 1.20413 1.21017 1.93234
1.19378 0.99783 0.87789 0.89126 1.20005 1.05518 0.95695 0.94514
1.20339 0.97583 0.99201 0.90113 1.20814 1.00559 0.94381 1.00081
1.21026 0.97693 0.97587 0.93768 1.20037 1.03123 0.98498 0.91114
1.19601 0.99997 0.96232 0.81473 1.84297 1.66583 1.35671 1.20357
1.22345 1.04030 0.86629 0.94898 1.16067 0.80175 0.83882 0.81020
1.90930 1.43907 1.22055 1.81844 1.48428 1.57347 1.20099 1.07362
1.22118 0.96941 0.83817 0.98967 1.23243 1.02387 1.00752 0.92899
1.21515 0.95865 0.91206 0.85139 0.90198 1.43875 1.21615 1.64875
1.00015 1.20830 0.85371 0.97311 0.95191 1.19246 1.20670 1.12226
0.86947 0.91139 1.25074 0.99942 0.95988 0.98399 1.70082 1.46102
1.18621 1.19811 0.86157 0.78307 0.79397 0.82482 1.20241 1.21547
1.21661 1.23262 1.02632 1.01322 0.76381 0.88214 0.93697 0.92784
0.85226 0.85037 0.84447 0.84416 0.91428 0.91643 0.90413 0.90420
0.94772 0.93851 0.97866 0.93616 0.90828 0.90455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.43 11.13 101.05 1.12 1.55 16
2 O -0.29 -4.29 9.75 -30.33 -0.30 -4.58 16
3 C 0.09 1.29 6.52 -36.76 -0.24 1.05 16
4 C -0.16 -1.92 6.38 -105.09 -0.67 -2.59 16
5 C -0.05 -0.51 10.05 -39.65 -0.40 -0.91 16
6 C -0.14 -1.00 9.98 -39.94 -0.40 -1.40 16
7 C -0.08 -0.56 10.01 -39.53 -0.40 -0.96 16
8 C -0.11 -0.95 10.07 -39.44 -0.40 -1.35 16
9 C 0.08 0.90 7.39 -38.39 -0.28 0.61 16
10 O -0.17 -2.29 8.07 1.86 0.02 -2.27 16
11 C -0.03 -0.44 6.91 -36.98 -0.26 -0.69 16
12 C 0.60 10.75 7.80 -13.07 -0.10 10.65 16
13 O -0.51 -10.43 16.44 -6.81 -0.11 -10.54 16
14 N -0.60 -10.32 3.32 -172.10 -0.57 -10.89 16
15 C 0.10 1.52 5.53 -3.07 -0.02 1.50 16
16 C -0.15 -2.43 6.49 -24.90 -0.16 -2.60 16
17 C 0.17 3.42 3.55 -65.66 -0.23 3.19 16
18 H 0.08 1.59 7.96 -51.92 -0.41 1.17 16
19 N -0.58 -14.04 2.96 -170.90 -0.51 -14.54 16
20 C 0.16 3.73 7.56 59.84 0.45 4.19 16
21 C -0.26 -6.95 9.60 -15.06 -0.14 -7.09 16
22 H 0.07 1.83 7.87 -52.48 -0.41 1.41 16
23 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16
24 N -0.90 -25.84 10.77 55.49 0.60 -25.24 16
25 Si 0.91 21.42 29.58 -169.99 -5.03 16.39 16
26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
28 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16
29 C 0.09 1.70 6.46 -2.41 -0.02 1.68 16
30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16
31 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16
34 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16
35 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16
36 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16
37 H 0.07 0.89 7.64 -51.93 -0.40 0.50 16
38 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16
39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
40 H 0.08 1.28 6.47 -51.93 -0.34 0.95 16
41 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16
42 H 0.04 1.10 7.38 -51.93 -0.38 0.72 16
43 H 0.00 0.06 6.37 -51.93 -0.33 -0.27 16
44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
45 H 0.07 1.51 6.96 -51.93 -0.36 1.15 16
46 H 0.08 1.61 8.03 -51.93 -0.42 1.19 16
LS Contribution 379.61 15.07 5.72 5.72
Total: -1.00 -32.03 379.61 -8.76 -40.79
By element:
Atomic # 1 Polarization: 4.64 SS G_CDS: -6.35 Total: -1.72 kcal
Atomic # 6 Polarization: 9.12 SS G_CDS: -2.23 Total: 6.90 kcal
Atomic # 7 Polarization: -50.20 SS G_CDS: -0.48 Total: -50.68 kcal
Atomic # 8 Polarization: -17.01 SS G_CDS: -0.39 Total: -17.40 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -32.03 -8.76 -40.79 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972071802.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.056 kcal
(2) G-P(sol) polarization free energy of solvation -32.029 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.270 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds