Wall clock time and date at job start Sat Apr 11 2020 07:09:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35559 * 116.99919 * 2 1
4 4 C 1.46694 * 127.03538 * 90.00361 * 3 2 1
5 5 C 1.39575 * 134.08519 * 359.97438 * 4 3 2
6 6 C 1.36668 * 119.73284 * 179.97438 * 5 4 3
7 7 C 1.38801 * 120.41133 * 0.02562 * 6 5 4
8 8 C 1.37803 * 120.71709 * 359.97438 * 7 6 5
9 9 C 1.39050 * 119.86787 * 359.97438 * 8 7 6
10 10 O 1.34760 * 133.07470 * 180.02562 * 9 8 7
11 11 C 1.35216 * 110.96852 * 179.75220 * 10 9 8
12 12 C 1.46186 * 125.23790 * 180.24731 * 11 10 9
13 13 O 1.21746 * 120.00448 * 180.17123 * 12 11 10
14 14 N 1.34783 * 119.99403 * 0.16698 * 12 11 10
15 15 C 1.47018 * 125.64999 * 0.02862 * 14 12 11
16 16 C 1.54324 * 107.27304 * 181.02162 * 15 14 12
17 17 C 1.55157 * 102.93971 * 22.19087 * 16 15 14
18 18 H 1.09007 * 111.00272 * 82.61226 * 17 16 15
19 19 N 1.46501 * 111.00455 * 206.42474 * 17 16 15
20 20 C 1.46494 * 120.00087 * 60.00076 * 19 17 16
21 21 C 1.36943 * 120.00053 * 240.00078 * 19 17 16
22 22 H 1.08005 * 119.99927 * 23.24935 * 21 19 17
23 23 C 1.38809 * 120.00351 * 203.24392 * 21 19 17
24 24 N 1.31621 * 119.99682 * 13.77037 * 23 21 19
25 25 Si 1.86793 * 120.00532 * 193.76667 * 23 21 19
26 26 H 1.48509 * 109.46983 * 0.02562 * 25 23 21
27 27 H 1.48499 * 109.47270 * 119.99814 * 25 23 21
28 28 H 1.48494 * 109.47472 * 240.00640 * 25 23 21
29 29 C 1.47421 * 125.64652 * 179.71898 * 14 12 11
30 30 H 1.08998 * 109.47322 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47397 * 299.99743 * 1 2 3
32 32 H 1.09000 * 109.47212 * 59.99697 * 1 2 3
33 33 H 1.08002 * 120.13499 * 359.93577 * 5 4 3
34 34 H 1.08000 * 119.79723 * 180.02562 * 6 5 4
35 35 H 1.08001 * 119.63916 * 179.97438 * 7 6 5
36 36 H 1.08003 * 120.06565 * 180.02562 * 8 7 6
37 37 H 1.08997 * 109.88193 * 300.43974 * 15 14 12
38 38 H 1.08996 * 109.88775 * 61.45100 * 15 14 12
39 39 H 1.08994 * 110.72496 * 140.55495 * 16 15 14
40 40 H 1.09001 * 110.71979 * 263.65723 * 16 15 14
41 41 H 1.09002 * 109.46922 * 95.16061 * 20 19 17
42 42 H 1.08999 * 109.47075 * 215.16034 * 20 19 17
43 43 H 1.08998 * 109.47274 * 335.15745 * 20 19 17
44 44 H 0.97005 * 120.00333 * 179.97438 * 24 23 21
45 45 H 1.09004 * 110.36890 * 274.74814 * 29 14 12
46 46 H 1.09001 * 110.36854 * 37.06803 * 29 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0444 1.2079 0.0000
4 6 2.4456 1.9951 1.1710
5 6 2.3475 1.8033 2.5500
6 6 2.8329 2.7545 3.4029
7 6 3.4218 3.9090 2.9060
8 6 3.5280 4.1165 1.5478
9 6 3.0419 3.1619 0.6614
10 8 3.0057 3.0889 -0.6838
11 6 2.4251 1.9374 -1.0904
12 6 2.2296 1.5373 -2.4828
13 8 1.6908 0.4767 -2.7415
14 7 2.6460 2.3426 -3.4801
15 6 3.3086 3.6440 -3.3106
16 6 3.5755 4.2096 -4.7215
17 6 2.5407 3.4569 -5.5990
18 1 1.5630 3.9363 -5.5480
19 7 3.0018 3.3574 -6.9859
20 6 4.2575 2.6680 -7.2927
21 6 2.2591 3.9087 -7.9957
22 1 1.5685 4.7112 -7.7820
23 6 2.3937 3.4364 -9.2940
24 7 3.0163 2.2988 -9.5191
25 14 1.6912 4.4149 -10.7216
26 1 1.0447 5.6484 -10.2057
27 1 2.7857 4.7837 -11.6551
28 1 0.6852 3.5913 -11.4389
29 6 2.5180 2.0615 -4.9216
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8899
33 1 1.8892 0.9071 2.9416
34 1 2.7579 2.6069 4.4701
35 1 3.8009 4.6527 3.5913
36 1 3.9885 5.0186 1.1727
37 1 2.6589 4.3214 -2.7565
38 1 4.2499 3.5140 -2.7768
39 1 3.3939 5.2840 -4.7470
40 1 4.5928 3.9841 -5.0413
41 1 4.0471 1.6337 -7.5648
42 1 4.7532 3.1689 -8.1242
43 1 4.9065 2.6885 -6.4172
44 1 3.1101 1.9684 -10.4263
45 1 3.3567 1.4564 -5.2661
46 1 1.5746 1.5557 -5.1273
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000972071802.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:09:03
Heat of formation + Delta-G solvation = -16.492296 kcal
Electronic energy + Delta-G solvation = -30155.543012 eV
Core-core repulsion = 26012.885368 eV
Total energy + Delta-G solvation = -4142.657645 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-43.67700 -41.09012 -39.61878 -38.99691 -38.71356 -36.62371 -33.58285 -33.22088
-31.69211 -31.33776 -30.73013 -29.41890 -28.14757 -28.06265 -26.08507 -24.49662
-24.00473 -23.47551 -22.37543 -21.09839 -20.93349 -19.22527 -18.97865 -18.92774
-17.96943 -17.63465 -17.43729 -16.99935 -16.61527 -16.42060 -16.07815 -15.87632
-15.73054 -15.44335 -15.08348 -14.90397 -14.81135 -14.47589 -14.28744 -14.08722
-13.90451 -13.53405 -13.30884 -13.13319 -13.02550 -12.86385 -12.81704 -12.53573
-12.42212 -12.21102 -12.11303 -12.07508 -11.83058 -11.64184 -11.45588 -11.10056
-11.06157 -10.66540 -9.93722 -9.73301 -9.26923 -8.82014 -7.84935 -5.35664
-0.68790 0.27580 0.59572 1.18413 1.47264 1.48538 1.59046 1.75930
1.81187 2.43658 2.50384 2.67815 3.08485 3.27426 3.47554 3.61449
3.72118 3.85997 3.86714 4.00065 4.14465 4.20328 4.23290 4.26094
4.29553 4.35858 4.37279 4.45039 4.52476 4.61628 4.67575 4.76689
4.81057 4.93242 4.94179 5.04518 5.14442 5.16265 5.25142 5.32821
5.38530 5.44664 5.48987 5.63990 5.69272 5.93643 6.18797 6.25215
6.30123 6.74406 7.11382 7.81045 8.25870 9.17930
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.020914 B = 0.002475 C = 0.002306
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1338.491716 B =11312.127033 C =12140.372409
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.315 6.315
3 C 0.092 3.908
4 C -0.180 4.180
5 C -0.064 4.064
6 C -0.130 4.130
7 C -0.064 4.064
8 C -0.117 4.117
9 C 0.059 3.941
10 O -0.171 6.171
11 C -0.061 4.061
12 C 0.601 3.399
13 O -0.550 6.550
14 N -0.602 5.602
15 C 0.112 3.888
16 C -0.136 4.136
17 C 0.168 3.832
18 H 0.078 0.922
19 N -0.599 5.599
20 C 0.175 3.825
21 C -0.266 4.266
22 H 0.077 0.923
23 C -0.052 4.052
24 N -0.937 5.937
25 Si 0.971 3.029
26 H -0.263 1.263
27 H -0.291 1.291
28 H -0.295 1.295
29 C 0.099 3.901
30 H 0.119 0.881
31 H 0.069 0.931
32 H 0.034 0.966
33 H 0.141 0.859
34 H 0.167 0.833
35 H 0.179 0.821
36 H 0.160 0.840
37 H 0.087 0.913
38 H 0.082 0.918
39 H 0.099 0.901
40 H 0.075 0.925
41 H 0.002 0.998
42 H 0.020 0.980
43 H 0.034 0.966
44 H 0.249 0.751
45 H 0.058 0.942
46 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.414 5.399 30.073 30.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.231 6.231
3 C 0.043 3.957
4 C -0.182 4.182
5 C -0.082 4.082
6 C -0.147 4.147
7 C -0.082 4.082
8 C -0.135 4.135
9 C 0.011 3.989
10 O -0.074 6.074
11 C -0.111 4.111
12 C 0.390 3.610
13 O -0.431 6.431
14 N -0.333 5.333
15 C -0.010 4.010
16 C -0.176 4.176
17 C 0.059 3.941
18 H 0.096 0.904
19 N -0.320 5.320
20 C 0.030 3.970
21 C -0.396 4.396
22 H 0.095 0.905
23 C -0.247 4.247
24 N -0.583 5.583
25 Si 0.800 3.200
26 H -0.187 1.187
27 H -0.217 1.217
28 H -0.223 1.223
29 C -0.026 4.026
30 H 0.137 0.863
31 H 0.087 0.913
32 H 0.053 0.947
33 H 0.159 0.841
34 H 0.185 0.815
35 H 0.196 0.804
36 H 0.178 0.822
37 H 0.105 0.895
38 H 0.100 0.900
39 H 0.117 0.883
40 H 0.094 0.906
41 H 0.020 0.980
42 H 0.038 0.962
43 H 0.053 0.947
44 H 0.058 0.942
45 H 0.076 0.924
46 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 0.324 4.770 29.604 29.988
hybrid contribution -0.568 -0.345 -1.624 1.755
sum -0.244 4.424 27.980 28.329
Atomic orbital electron populations
1.23225 0.76249 1.05193 1.00943 1.85873 1.22100 1.21671 1.93472
1.19787 0.98462 0.87235 0.90212 1.20131 1.07130 0.95733 0.95174
1.20635 0.98028 1.00524 0.89062 1.21294 0.98477 0.93410 1.01555
1.21599 0.95298 0.97855 0.93446 1.20490 1.02994 0.98594 0.91466
1.20158 1.00660 0.97210 0.80844 1.84210 1.66856 1.34680 1.21611
1.21717 1.07305 0.88512 0.93608 1.16352 0.79283 0.83326 0.82079
1.90886 1.45662 1.23698 1.82841 1.48416 1.57654 1.21116 1.06135
1.22216 0.97924 0.82579 0.98307 1.23090 1.00629 1.01479 0.92370
1.21645 0.97101 0.91671 0.83674 0.90388 1.44045 1.21680 1.64905
1.01343 1.20526 0.85810 0.95063 0.95573 1.19610 1.20175 1.12034
0.87743 0.90549 1.25861 1.01007 0.96987 1.00892 1.70254 1.48011
1.20262 1.19777 0.85141 0.77280 0.78362 0.79256 1.18698 1.21730
1.22278 1.22869 1.00708 1.00718 0.78281 0.86286 0.91265 0.94739
0.84117 0.81527 0.80411 0.82248 0.89511 0.89989 0.88255 0.90638
0.97968 0.96167 0.94725 0.94215 0.92410 0.92893
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.84 11.13 113.37 1.26 2.10 16
2 O -0.32 -9.54 9.75 -77.22 -0.75 -10.30 16
3 C 0.09 2.73 6.52 24.10 0.16 2.89 16
4 C -0.18 -4.21 6.38 -20.17 -0.13 -4.34 16
5 C -0.06 -1.03 10.05 22.22 0.22 -0.80 16
6 C -0.13 -1.23 9.98 22.04 0.22 -1.01 16
7 C -0.06 -0.54 10.01 22.30 0.22 -0.31 16
8 C -0.12 -1.60 10.07 22.36 0.23 -1.37 16
9 C 0.06 1.30 7.39 23.04 0.17 1.47 16
10 O -0.17 -4.56 8.07 -16.25 -0.13 -4.69 16
11 C -0.06 -1.94 6.91 23.95 0.17 -1.77 16
12 C 0.60 22.43 7.80 86.31 0.67 23.11 16
13 O -0.55 -24.03 16.44 6.94 0.11 -23.91 16
14 N -0.60 -21.16 3.32 -816.61 -2.72 -23.88 16
15 C 0.11 3.09 5.53 86.73 0.48 3.57 16
16 C -0.14 -4.13 6.49 31.78 0.21 -3.92 16
17 C 0.17 6.68 3.55 46.46 0.16 6.85 16
18 H 0.08 3.11 7.96 -2.38 -0.02 3.09 16
19 N -0.60 -29.33 2.96 -694.60 -2.05 -31.39 16
20 C 0.17 8.57 7.56 127.77 0.97 9.53 16
21 C -0.27 -14.28 9.60 84.03 0.81 -13.47 16
22 H 0.08 3.94 7.87 -2.91 -0.02 3.92 16
23 C -0.05 -2.89 5.08 84.86 0.43 -2.46 16
24 N -0.94 -55.62 10.77 21.65 0.23 -55.39 16
25 Si 0.97 44.73 29.58 68.60 2.03 46.76 16
26 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16
27 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16
28 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16
29 C 0.10 4.01 6.46 86.93 0.56 4.57 16
30 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16
31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16
33 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16
34 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16
35 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16
36 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16
37 H 0.09 2.11 7.64 -2.39 -0.02 2.10 16
38 H 0.08 2.05 7.75 -2.39 -0.02 2.04 16
39 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16
40 H 0.08 2.36 6.47 -2.39 -0.02 2.34 16
41 H 0.00 0.11 7.33 -2.39 -0.02 0.09 16
42 H 0.02 1.04 7.38 -2.39 -0.02 1.03 16
43 H 0.03 1.44 6.37 -2.39 -0.02 1.42 16
44 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16
45 H 0.06 2.51 6.96 -2.38 -0.02 2.49 16
46 H 0.05 2.36 8.03 -2.39 -0.02 2.34 16
Total: -1.00 -74.12 379.61 4.53 -69.59
By element:
Atomic # 1 Polarization: 7.58 SS G_CDS: 1.00 Total: 8.58 kcal
Atomic # 6 Polarization: 17.81 SS G_CDS: 6.81 Total: 24.62 kcal
Atomic # 7 Polarization: -106.12 SS G_CDS: -4.54 Total: -110.66 kcal
Atomic # 8 Polarization: -38.12 SS G_CDS: -0.77 Total: -38.90 kcal
Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal
Total: -74.12 4.53 -69.59 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972071802.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.102 kcal
(2) G-P(sol) polarization free energy of solvation -74.123 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.021 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.492 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds