Wall clock time and date at job start Sat Apr 11 2020 07:06:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35905 * 116.99753 * 2 1
4 4 C 1.38748 * 120.05679 * 359.97438 * 3 2 1
5 5 C 1.38123 * 119.94608 * 180.02562 * 4 3 2
6 6 C 1.38283 * 120.05044 * 359.72102 * 5 4 3
7 7 C 1.38243 * 120.11589 * 0.55318 * 6 5 4
8 8 C 1.50697 * 119.97592 * 179.72746 * 7 6 5
9 9 H 1.08998 * 110.28899 * 157.75233 * 8 7 6
10 10 C 1.54480 * 110.24363 * 279.72508 * 8 7 6
11 11 H 1.08997 * 111.00311 * 211.71702 * 10 8 7
12 12 C 1.50703 * 110.97195 * 335.46613 * 10 8 7
13 13 O 1.21293 * 119.99482 * 353.82984 * 12 10 8
14 14 N 1.34777 * 120.00290 * 173.83421 * 12 10 8
15 15 C 1.37092 * 119.99729 * 180.27555 * 14 12 10
16 16 H 1.08002 * 120.00496 * 359.72414 * 15 14 12
17 17 C 1.38958 * 120.00096 * 179.72242 * 15 14 12
18 18 N 1.31406 * 120.00295 * 180.02562 * 17 15 14
19 19 Si 1.86800 * 119.99484 * 359.97438 * 17 15 14
20 20 H 1.48500 * 109.47210 * 90.00351 * 19 17 15
21 21 H 1.48506 * 109.47251 * 210.00025 * 19 17 15
22 22 H 1.48504 * 109.47424 * 330.00119 * 19 17 15
23 23 C 1.54632 * 101.76617 * 93.58131 * 10 8 7
24 24 C 1.51283 * 104.19107 * 24.80186 * 23 10 8
25 25 O 1.21285 * 124.94208 * 163.78568 * 24 23 10
26 26 N 1.34416 * 110.11513 * 343.74502 * 24 23 10
27 27 C 1.46501 * 124.34865 * 179.57621 * 26 24 23
28 28 C 1.53002 * 117.49815 * 8.71989 * 27 26 24
29 29 C 1.52999 * 117.49806 * 300.06201 * 27 26 24
30 30 C 1.38168 * 120.05323 * 359.44741 * 7 6 5
31 31 H 1.09002 * 109.47414 * 60.00167 * 1 2 3
32 32 H 1.08998 * 109.47280 * 179.97438 * 1 2 3
33 33 H 1.09004 * 109.47234 * 299.99998 * 1 2 3
34 34 H 1.08006 * 120.02840 * 0.04083 * 4 3 2
35 35 H 1.07995 * 119.97376 * 180.02562 * 5 4 3
36 36 H 1.08004 * 119.94127 * 180.30354 * 6 5 4
37 37 H 0.97001 * 119.99727 * 359.97438 * 14 12 10
38 38 H 0.97004 * 119.99848 * 179.97438 * 18 17 15
39 39 H 1.08999 * 110.48378 * 143.47149 * 23 10 8
40 40 H 1.08995 * 110.48885 * 266.12137 * 23 10 8
41 41 H 1.08998 * 115.55465 * 154.38820 * 27 26 24
42 42 H 1.09002 * 117.49814 * 0.02562 * 28 27 26
43 43 H 1.09002 * 117.49918 * 145.02326 * 28 27 26
44 44 H 1.09003 * 117.49954 * 214.97571 * 29 27 26
45 45 H 1.09000 * 117.49901 * 359.97438 * 29 27 26
46 46 H 1.08002 * 120.02943 * 180.24616 * 30 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 1.2914 2.3753 -0.0005
5 6 1.9208 3.6048 -0.0011
6 6 3.3018 3.6758 0.0048
7 6 4.0559 2.5172 -0.0004
8 6 5.5607 2.5983 -0.0002
9 1 5.9890 1.6720 0.3827
10 6 6.0811 2.8777 -1.4277
11 1 7.0547 2.4142 -1.5862
12 6 5.0903 2.4127 -2.4637
13 8 4.1012 1.7982 -2.1240
14 7 5.3033 2.6795 -3.7675
15 6 4.3992 2.2613 -4.7093
16 1 3.5184 1.7142 -4.4069
17 6 4.6158 2.5413 -6.0530
18 7 3.7489 2.1409 -6.9557
19 14 6.1388 3.4882 -6.5758
20 1 7.2435 2.5352 -6.8523
21 1 5.8394 4.2685 -7.8034
22 1 6.5442 4.4138 -5.4876
23 6 6.1961 4.4198 -1.4250
24 6 6.3655 4.7766 0.0353
25 8 6.7650 5.8450 0.4476
26 7 6.0079 3.7376 0.8095
27 6 6.0584 3.7418 2.2737
28 6 6.3537 5.0736 2.9665
29 6 7.4193 3.9751 2.9329
30 6 3.4311 1.2849 0.0001
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 -0.3634 0.5138 0.8900
34 1 0.2127 2.3203 -0.0003
35 1 1.3339 4.5114 -0.0011
36 1 3.7920 4.6381 0.0093
37 1 6.0942 3.1711 -4.0390
38 1 3.9000 2.3368 -7.8937
39 1 7.0663 4.7383 -1.9989
40 1 5.2881 4.8708 -1.8251
41 1 5.3694 3.0583 2.7699
42 1 6.5100 5.9467 2.3330
43 1 5.8594 5.2661 3.9187
44 1 7.6254 3.4454 3.8630
45 1 8.2770 4.1251 2.2772
46 1 4.0206 0.3799 0.0001
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000180721376.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:15
Heat of formation + Delta-G solvation = -15.056704 kcal
Electronic energy + Delta-G solvation = -31471.029308 eV
Core-core repulsion = 27328.433915 eV
Total energy + Delta-G solvation = -4142.595393 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.29057 -39.52014 -38.58175 -37.10461 -36.58298 -35.65847 -34.08182 -31.94455
-30.95846 -30.85616 -29.70865 -27.39210 -26.72513 -25.27177 -23.09059 -22.73126
-22.42908 -22.08231 -20.93283 -19.36009 -19.08412 -18.39837 -17.62173 -16.93292
-16.27498 -15.86846 -15.70447 -15.44779 -15.40070 -15.14847 -14.74778 -14.42798
-14.22629 -13.92302 -13.80542 -13.48925 -13.21772 -13.02836 -13.00838 -12.77588
-12.51141 -12.40070 -11.95642 -11.89910 -11.60677 -11.54835 -11.37013 -11.24002
-11.20800 -10.94765 -10.65761 -10.62182 -10.48912 -10.42030 -10.03369 -9.63750
-9.57765 -9.01730 -8.57394 -8.25961 -7.68034 -7.49525 -6.37132 -3.88236
1.79941 2.02863 2.52870 2.80252 2.98679 3.02870 3.12527 3.57316
3.63074 3.78884 4.05013 4.13262 4.22544 4.52273 4.65119 4.76905
4.87491 4.92349 4.98902 5.13280 5.15331 5.17761 5.25833 5.31534
5.38801 5.45176 5.48497 5.54151 5.60405 5.63080 5.68108 5.76110
5.89290 5.91577 5.96616 6.01236 6.08022 6.19753 6.47280 6.63351
6.77971 6.89276 7.00454 7.11919 7.20451 7.48916 7.85416 8.07281
8.16744 8.50744 8.88180 9.35202 9.72656 10.75466
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.008096 B = 0.005328 C = 0.003498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3457.537742 B = 5254.139430 C = 8002.462309
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.321 6.321
3 C 0.120 3.880
4 C -0.207 4.207
5 C -0.087 4.087
6 C -0.148 4.148
7 C -0.014 4.014
8 C 0.195 3.805
9 H 0.101 0.899
10 C -0.109 4.109
11 H 0.109 0.891
12 C 0.453 3.547
13 O -0.542 6.542
14 N -0.580 5.580
15 C -0.302 4.302
16 H 0.121 0.879
17 C 0.044 3.956
18 N -0.878 5.878
19 Si 0.875 3.125
20 H -0.270 1.270
21 H -0.276 1.276
22 H -0.268 1.268
23 C -0.151 4.151
24 C 0.525 3.475
25 O -0.531 6.531
26 N -0.581 5.581
27 C 0.086 3.914
28 C -0.191 4.191
29 C -0.191 4.191
30 C -0.070 4.070
31 H 0.053 0.947
32 H 0.093 0.907
33 H 0.048 0.952
34 H 0.116 0.884
35 H 0.113 0.887
36 H 0.105 0.895
37 H 0.369 0.631
38 H 0.274 0.726
39 H 0.107 0.893
40 H 0.113 0.887
41 H 0.129 0.871
42 H 0.131 0.869
43 H 0.094 0.906
44 H 0.098 0.902
45 H 0.094 0.906
46 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.291 1.011 16.661 16.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.235 6.235
3 C 0.075 3.925
4 C -0.226 4.226
5 C -0.105 4.105
6 C -0.167 4.167
7 C -0.015 4.015
8 C 0.091 3.909
9 H 0.119 0.881
10 C -0.132 4.132
11 H 0.127 0.873
12 C 0.238 3.762
13 O -0.424 6.424
14 N -0.218 5.218
15 C -0.431 4.431
16 H 0.139 0.861
17 C -0.159 4.159
18 N -0.517 5.517
19 Si 0.701 3.299
20 H -0.196 1.196
21 H -0.201 1.201
22 H -0.194 1.194
23 C -0.192 4.192
24 C 0.314 3.686
25 O -0.408 6.408
26 N -0.312 5.312
27 C -0.017 4.017
28 C -0.228 4.228
29 C -0.230 4.230
30 C -0.089 4.089
31 H 0.072 0.928
32 H 0.111 0.889
33 H 0.067 0.933
34 H 0.134 0.866
35 H 0.131 0.869
36 H 0.123 0.877
37 H 0.202 0.798
38 H 0.085 0.915
39 H 0.125 0.875
40 H 0.131 0.869
41 H 0.147 0.853
42 H 0.149 0.851
43 H 0.113 0.887
44 H 0.117 0.883
45 H 0.112 0.888
46 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 1.847 0.939 16.917 17.044
hybrid contribution 0.826 0.853 -0.949 1.520
sum 2.673 1.792 15.968 16.289
Atomic orbital electron populations
1.22931 0.79283 1.03186 1.00961 1.86028 1.20652 1.27502 1.89308
1.18730 0.92163 0.83607 0.97974 1.20979 0.99115 0.92611 1.09881
1.20597 0.94304 0.96465 0.99135 1.20494 0.93677 0.97069 1.05467
1.19159 0.93276 0.92917 0.96189 1.20285 0.91595 0.89420 0.89602
0.88095 1.22249 1.01147 0.95710 0.94082 0.87303 1.19155 0.88114
0.86244 0.82692 1.90766 1.29819 1.43714 1.78126 1.42218 1.22756
1.50881 1.05931 1.19413 1.04295 1.33739 0.85637 0.86124 1.25033
0.97630 0.97673 0.95603 1.69614 1.35065 1.45304 1.01725 0.86741
0.83295 0.80438 0.79384 1.19553 1.20135 1.19350 1.22474 1.06022
0.95860 0.94794 1.20872 0.75704 0.83052 0.88973 1.90586 1.47124
1.24375 1.78763 1.47675 1.63876 1.15083 1.04550 1.21467 0.99506
1.02130 0.78645 1.23747 1.01903 0.94865 1.02265 1.23355 0.93540
1.03527 1.02585 1.19689 0.90866 0.97087 1.01276 0.92794 0.88871
0.93329 0.86597 0.86928 0.87675 0.79780 0.91546 0.87495 0.86902
0.85345 0.85107 0.88719 0.88348 0.88782 0.86228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 9.81 101.05 0.99 1.37 16
2 O -0.32 -5.31 10.50 -19.44 -0.20 -5.52 16
3 C 0.12 2.09 6.69 -39.22 -0.26 1.83 16
4 C -0.21 -3.36 9.04 -39.44 -0.36 -3.72 16
5 C -0.09 -1.40 10.04 -39.61 -0.40 -1.80 16
6 C -0.15 -2.44 8.99 -39.56 -0.36 -2.80 16
7 C -0.01 -0.23 2.92 -104.65 -0.31 -0.53 16
8 C 0.19 2.70 3.23 -68.17 -0.22 2.48 16
9 H 0.10 1.21 8.06 -51.93 -0.42 0.80 16
10 C -0.11 -1.61 3.45 -90.14 -0.31 -1.93 16
11 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16
12 C 0.45 9.02 6.75 -10.98 -0.07 8.95 16
13 O -0.54 -12.34 10.80 5.55 0.06 -12.28 16
14 N -0.58 -12.68 5.04 -10.96 -0.06 -12.74 16
15 C -0.30 -8.05 10.16 -14.93 -0.15 -8.20 16
16 H 0.12 3.71 7.39 -52.49 -0.39 3.32 16
17 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16
18 N -0.88 -24.90 13.96 55.50 0.77 -24.13 16
19 Si 0.88 18.73 27.74 -169.99 -4.71 14.02 16
20 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16
21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
22 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16
23 C -0.15 -2.15 5.88 -26.74 -0.16 -2.31 16
24 C 0.53 7.76 6.75 -10.86 -0.07 7.69 16
25 O -0.53 -9.00 14.69 5.55 0.08 -8.92 16
26 N -0.58 -7.65 2.35 -158.68 -0.37 -8.02 16
27 C 0.09 0.99 6.87 -67.93 -0.47 0.52 16
28 C -0.19 -2.17 9.78 -26.69 -0.26 -2.43 16
29 C -0.19 -1.97 10.35 -26.69 -0.28 -2.25 16
30 C -0.07 -1.21 6.87 -39.43 -0.27 -1.48 16
31 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16
32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16
33 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16
34 H 0.12 1.61 6.30 -52.48 -0.33 1.28 16
35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16
36 H 0.11 1.71 6.40 -52.48 -0.34 1.37 16
37 H 0.37 7.21 5.76 -40.82 -0.24 6.97 16
38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16
39 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16
40 H 0.11 1.75 7.81 -51.93 -0.41 1.34 16
41 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16
42 H 0.13 1.85 5.29 -51.93 -0.27 1.57 16
43 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16
44 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16
45 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
46 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16
LS Contribution 372.64 15.07 5.62 5.62
Total: -1.00 -31.93 372.64 -8.02 -39.94
By element:
Atomic # 1 Polarization: 21.71 SS G_CDS: -6.16 Total: 15.55 kcal
Atomic # 6 Polarization: -0.49 SS G_CDS: -3.04 Total: -3.53 kcal
Atomic # 7 Polarization: -45.23 SS G_CDS: 0.35 Total: -44.89 kcal
Atomic # 8 Polarization: -26.65 SS G_CDS: -0.06 Total: -26.71 kcal
Atomic # 14 Polarization: 18.73 SS G_CDS: -4.71 Total: 14.02 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -31.93 -8.02 -39.94 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000180721376.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.887 kcal
(2) G-P(sol) polarization free energy of solvation -31.927 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.040 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.057 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds