Wall clock time and date at job start Sat Apr 11 2020 07:06:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35905 * 116.99753 * 2 1
4 4 C 1.38748 * 120.05679 * 359.97438 * 3 2 1
5 5 C 1.38123 * 119.94608 * 180.02562 * 4 3 2
6 6 C 1.38283 * 120.05044 * 359.72102 * 5 4 3
7 7 C 1.38243 * 120.11589 * 0.55318 * 6 5 4
8 8 C 1.50697 * 119.97592 * 179.72746 * 7 6 5
9 9 H 1.08998 * 110.28899 * 157.75233 * 8 7 6
10 10 C 1.54480 * 110.24363 * 279.72508 * 8 7 6
11 11 H 1.08997 * 111.00311 * 211.71702 * 10 8 7
12 12 C 1.50703 * 110.97195 * 335.46613 * 10 8 7
13 13 O 1.21293 * 119.99482 * 353.82984 * 12 10 8
14 14 N 1.34777 * 120.00290 * 173.83421 * 12 10 8
15 15 C 1.37092 * 119.99729 * 180.27555 * 14 12 10
16 16 H 1.08002 * 120.00496 * 359.72414 * 15 14 12
17 17 C 1.38958 * 120.00096 * 179.72242 * 15 14 12
18 18 N 1.31406 * 120.00295 * 180.02562 * 17 15 14
19 19 Si 1.86800 * 119.99484 * 359.97438 * 17 15 14
20 20 H 1.48500 * 109.47210 * 90.00351 * 19 17 15
21 21 H 1.48506 * 109.47251 * 210.00025 * 19 17 15
22 22 H 1.48504 * 109.47424 * 330.00119 * 19 17 15
23 23 C 1.54632 * 101.76617 * 93.58131 * 10 8 7
24 24 C 1.51283 * 104.19107 * 24.80186 * 23 10 8
25 25 O 1.21285 * 124.94208 * 163.78568 * 24 23 10
26 26 N 1.34416 * 110.11513 * 343.74502 * 24 23 10
27 27 C 1.46501 * 124.34865 * 179.57621 * 26 24 23
28 28 C 1.53002 * 117.49815 * 8.71989 * 27 26 24
29 29 C 1.52999 * 117.49806 * 300.06201 * 27 26 24
30 30 C 1.38168 * 120.05323 * 359.44741 * 7 6 5
31 31 H 1.09002 * 109.47414 * 60.00167 * 1 2 3
32 32 H 1.08998 * 109.47280 * 179.97438 * 1 2 3
33 33 H 1.09004 * 109.47234 * 299.99998 * 1 2 3
34 34 H 1.08006 * 120.02840 * 0.04083 * 4 3 2
35 35 H 1.07995 * 119.97376 * 180.02562 * 5 4 3
36 36 H 1.08004 * 119.94127 * 180.30354 * 6 5 4
37 37 H 0.97001 * 119.99727 * 359.97438 * 14 12 10
38 38 H 0.97004 * 119.99848 * 179.97438 * 18 17 15
39 39 H 1.08999 * 110.48378 * 143.47149 * 23 10 8
40 40 H 1.08995 * 110.48885 * 266.12137 * 23 10 8
41 41 H 1.08998 * 115.55465 * 154.38820 * 27 26 24
42 42 H 1.09002 * 117.49814 * 0.02562 * 28 27 26
43 43 H 1.09002 * 117.49918 * 145.02326 * 28 27 26
44 44 H 1.09003 * 117.49954 * 214.97571 * 29 27 26
45 45 H 1.09000 * 117.49901 * 359.97438 * 29 27 26
46 46 H 1.08002 * 120.02943 * 180.24616 * 30 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 1.2914 2.3753 -0.0005
5 6 1.9208 3.6048 -0.0011
6 6 3.3018 3.6758 0.0048
7 6 4.0559 2.5172 -0.0004
8 6 5.5607 2.5983 -0.0002
9 1 5.9890 1.6720 0.3827
10 6 6.0811 2.8777 -1.4277
11 1 7.0547 2.4142 -1.5862
12 6 5.0903 2.4127 -2.4637
13 8 4.1012 1.7982 -2.1240
14 7 5.3033 2.6795 -3.7675
15 6 4.3992 2.2613 -4.7093
16 1 3.5184 1.7142 -4.4069
17 6 4.6158 2.5413 -6.0530
18 7 3.7489 2.1409 -6.9557
19 14 6.1388 3.4882 -6.5758
20 1 7.2435 2.5352 -6.8523
21 1 5.8394 4.2685 -7.8034
22 1 6.5442 4.4138 -5.4876
23 6 6.1961 4.4198 -1.4250
24 6 6.3655 4.7766 0.0353
25 8 6.7650 5.8450 0.4476
26 7 6.0079 3.7376 0.8095
27 6 6.0584 3.7418 2.2737
28 6 6.3537 5.0736 2.9665
29 6 7.4193 3.9751 2.9329
30 6 3.4311 1.2849 0.0001
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 -0.3634 0.5138 0.8900
34 1 0.2127 2.3203 -0.0003
35 1 1.3339 4.5114 -0.0011
36 1 3.7920 4.6381 0.0093
37 1 6.0942 3.1711 -4.0390
38 1 3.9000 2.3368 -7.8937
39 1 7.0663 4.7383 -1.9989
40 1 5.2881 4.8708 -1.8251
41 1 5.3694 3.0583 2.7699
42 1 6.5100 5.9467 2.3330
43 1 5.8594 5.2661 3.9187
44 1 7.6254 3.4454 3.8630
45 1 8.2770 4.1251 2.2772
46 1 4.0206 0.3799 0.0001
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000180721376.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:06:14
Heat of formation + Delta-G solvation = -35.165882 kcal
Electronic energy + Delta-G solvation = -31471.901307 eV
Core-core repulsion = 27328.433915 eV
Total energy + Delta-G solvation = -4143.467392 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.49111 -40.73110 -40.07510 -38.42588 -37.58142 -36.86607 -35.90597 -33.77842
-32.20895 -32.12899 -30.93334 -28.57632 -27.89533 -26.97409 -24.36690 -23.81140
-23.48823 -23.18435 -22.19889 -21.07223 -20.19976 -20.05296 -18.91984 -18.02297
-17.65597 -17.11916 -16.90108 -16.81456 -16.65747 -16.51625 -16.13456 -15.61439
-15.49796 -15.22791 -15.13125 -14.75343 -14.62185 -14.37468 -14.32958 -14.18710
-13.94631 -13.63322 -13.35982 -13.02211 -12.95145 -12.70518 -12.57375 -12.41543
-12.36639 -12.30790 -12.06895 -11.96006 -11.81303 -11.60335 -11.42188 -11.33931
-10.80810 -10.44824 -10.17317 -9.60316 -9.00505 -8.90671 -8.36269 -5.94615
0.53182 0.72038 1.32426 1.36304 1.40027 1.44743 1.74866 1.98161
2.25455 2.49488 2.75646 2.88419 2.98117 3.17571 3.34771 3.47981
3.73205 3.80097 3.93760 3.97678 4.05569 4.07663 4.16360 4.22709
4.31801 4.37355 4.39554 4.41199 4.49939 4.60536 4.68368 4.73087
4.74180 4.82178 4.84730 4.87985 5.05665 5.22072 5.31959 5.49989
5.56164 5.58729 5.64230 5.78715 5.97189 6.00335 6.02792 6.62338
6.62588 6.94972 7.05708 7.45690 8.01329 8.80943
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.008096 B = 0.005328 C = 0.003498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3457.537742 B = 5254.139430 C = 8002.462309
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.342 6.342
3 C 0.103 3.897
4 C -0.217 4.217
5 C -0.098 4.098
6 C -0.160 4.160
7 C -0.014 4.014
8 C 0.197 3.803
9 H 0.126 0.874
10 C -0.099 4.099
11 H 0.149 0.851
12 C 0.461 3.539
13 O -0.569 6.569
14 N -0.587 5.587
15 C -0.311 4.311
16 H 0.060 0.940
17 C -0.013 4.013
18 N -0.936 5.936
19 Si 0.951 3.049
20 H -0.258 1.258
21 H -0.282 1.282
22 H -0.230 1.230
23 C -0.149 4.149
24 C 0.525 3.475
25 O -0.554 6.554
26 N -0.573 5.573
27 C 0.073 3.927
28 C -0.197 4.197
29 C -0.173 4.173
30 C -0.090 4.090
31 H 0.046 0.954
32 H 0.118 0.882
33 H 0.068 0.932
34 H 0.135 0.865
35 H 0.131 0.869
36 H 0.106 0.894
37 H 0.385 0.615
38 H 0.276 0.724
39 H 0.133 0.867
40 H 0.098 0.902
41 H 0.144 0.856
42 H 0.104 0.896
43 H 0.113 0.887
44 H 0.125 0.875
45 H 0.083 0.917
46 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.695 1.745 18.366 19.037
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.257 6.257
3 C 0.058 3.942
4 C -0.236 4.236
5 C -0.116 4.116
6 C -0.179 4.179
7 C -0.016 4.016
8 C 0.093 3.907
9 H 0.144 0.856
10 C -0.121 4.121
11 H 0.166 0.834
12 C 0.248 3.752
13 O -0.452 6.452
14 N -0.228 5.228
15 C -0.441 4.441
16 H 0.079 0.921
17 C -0.212 4.212
18 N -0.577 5.577
19 Si 0.772 3.228
20 H -0.182 1.182
21 H -0.207 1.207
22 H -0.154 1.154
23 C -0.189 4.189
24 C 0.314 3.686
25 O -0.434 6.434
26 N -0.302 5.302
27 C -0.030 4.030
28 C -0.235 4.235
29 C -0.212 4.212
30 C -0.109 4.109
31 H 0.065 0.935
32 H 0.136 0.864
33 H 0.087 0.913
34 H 0.153 0.847
35 H 0.149 0.851
36 H 0.124 0.876
37 H 0.220 0.780
38 H 0.085 0.915
39 H 0.151 0.849
40 H 0.116 0.884
41 H 0.161 0.839
42 H 0.122 0.878
43 H 0.132 0.868
44 H 0.143 0.857
45 H 0.102 0.898
46 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 4.251 1.664 18.680 19.230
hybrid contribution -0.105 0.541 -1.328 1.438
sum 4.145 2.205 17.352 17.976
Atomic orbital electron populations
1.23218 0.77166 1.05127 1.01563 1.85993 1.22972 1.27407 1.89284
1.19036 0.92719 0.84308 0.98100 1.21240 1.00229 0.92370 1.09774
1.20933 0.94695 0.97265 0.98697 1.20631 0.94037 0.97276 1.05958
1.19371 0.94645 0.92288 0.95290 1.20333 0.90210 0.90675 0.89438
0.85582 1.22207 1.01045 0.96465 0.92409 0.83362 1.20130 0.88150
0.84009 0.82898 1.90790 1.31352 1.44201 1.78849 1.42030 1.22802
1.52159 1.05836 1.18936 1.03807 1.34093 0.87221 0.92145 1.25969
1.01549 0.98626 0.95007 1.69796 1.38050 1.47641 1.02254 0.85551
0.78335 0.79359 0.79523 1.18217 1.20707 1.15365 1.22480 1.06522
0.94912 0.94998 1.20894 0.75573 0.82938 0.89215 1.90599 1.48411
1.25273 1.79108 1.47655 1.62926 1.14309 1.05313 1.21756 1.01022
1.02616 0.77601 1.23692 1.03143 0.93981 1.02640 1.23386 0.92301
1.02399 1.03086 1.19889 0.91202 0.97637 1.02162 0.93513 0.86390
0.91299 0.84734 0.85138 0.87628 0.77952 0.91452 0.84924 0.88392
0.83882 0.87797 0.86836 0.85690 0.89832 0.86229
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.56 9.81 113.37 1.11 1.67 16
2 O -0.34 -11.45 10.50 -92.48 -0.97 -12.42 16
3 C 0.10 3.64 6.69 22.50 0.15 3.79 16
4 C -0.22 -7.08 9.04 22.36 0.20 -6.88 16
5 C -0.10 -3.14 10.04 22.25 0.22 -2.92 16
6 C -0.16 -5.22 8.99 22.28 0.20 -5.02 16
7 C -0.01 -0.46 2.92 -19.88 -0.06 -0.51 16
8 C 0.20 5.00 3.23 44.70 0.14 5.15 16
9 H 0.13 2.62 8.06 -2.39 -0.02 2.60 16
10 C -0.10 -2.65 3.45 -10.48 -0.04 -2.69 16
11 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16
12 C 0.46 17.99 6.75 87.66 0.59 18.58 16
13 O -0.57 -26.31 10.80 -3.07 -0.03 -26.34 16
14 N -0.59 -25.23 5.04 -306.98 -1.55 -26.77 16
15 C -0.31 -17.11 10.16 84.04 0.85 -16.25 16
16 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16
17 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16
18 N -0.94 -55.31 13.96 21.66 0.30 -55.01 16
19 Si 0.95 37.81 27.74 68.60 1.90 39.71 16
20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16
21 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16
22 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16
23 C -0.15 -3.83 5.88 30.59 0.18 -3.65 16
24 C 0.52 14.36 6.75 87.90 0.59 14.96 16
25 O -0.55 -17.94 14.69 -3.05 -0.04 -17.99 16
26 N -0.57 -13.68 2.35 -774.53 -1.82 -15.50 16
27 C 0.07 1.48 6.87 44.99 0.31 1.79 16
28 C -0.20 -4.08 9.78 30.62 0.30 -3.78 16
29 C -0.17 -3.04 10.35 30.62 0.32 -2.72 16
30 C -0.09 -3.10 6.87 22.37 0.15 -2.95 16
31 H 0.05 1.15 7.66 -2.39 -0.02 1.13 16
32 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16
33 H 0.07 1.32 7.66 -2.38 -0.02 1.30 16
34 H 0.13 3.70 6.30 -2.91 -0.02 3.68 16
35 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16
36 H 0.11 3.37 6.40 -2.91 -0.02 3.35 16
37 H 0.39 13.97 5.76 -92.71 -0.53 13.44 16
38 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16
39 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16
40 H 0.10 2.87 7.81 -2.39 -0.02 2.85 16
41 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16
42 H 0.10 2.83 5.29 -2.39 -0.01 2.81 16
43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16
44 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16
45 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
46 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16
Total: -1.00 -74.45 372.64 3.93 -70.52
By element:
Atomic # 1 Polarization: 45.05 SS G_CDS: 0.43 Total: 45.48 kcal
Atomic # 6 Polarization: -7.38 SS G_CDS: 5.70 Total: -1.68 kcal
Atomic # 7 Polarization: -94.21 SS G_CDS: -3.06 Total: -97.28 kcal
Atomic # 8 Polarization: -55.70 SS G_CDS: -1.05 Total: -56.75 kcal
Atomic # 14 Polarization: 37.81 SS G_CDS: 1.90 Total: 39.71 kcal
Total: -74.45 3.93 -70.52 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000180721376.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.354 kcal
(2) G-P(sol) polarization free energy of solvation -74.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.091 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.520 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds