Wall clock time and date at job start Sat Apr 11 2020 07:07:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35908 * 116.99745 * 2 1
4 4 C 1.38726 * 120.05471 * 179.97438 * 3 2 1
5 5 C 1.38153 * 119.94138 * 180.02562 * 4 3 2
6 6 C 1.38262 * 120.05396 * 0.02863 * 5 4 3
7 7 C 1.50705 * 119.93973 * 179.97438 * 6 5 4
8 8 N 1.46499 * 109.47422 * 89.99488 * 7 6 5
9 9 C 1.34766 * 120.00006 * 179.97438 * 8 7 6
10 10 O 1.21611 * 120.00193 * 0.02562 * 9 8 7
11 11 C 1.47195 * 120.00179 * 180.02562 * 9 8 7
12 12 C 1.34758 * 120.00504 * 179.72963 * 11 9 8
13 13 C 1.47057 * 120.00358 * 180.27583 * 12 11 9
14 14 O 1.21685 * 120.00147 * 353.81254 * 13 12 11
15 15 N 1.34782 * 120.00234 * 173.80924 * 13 12 11
16 16 C 1.36065 * 120.00340 * 183.81784 * 15 13 12
17 17 H 1.08006 * 119.99561 * 7.49796 * 16 15 13
18 18 C 1.39641 * 120.00105 * 187.49659 * 16 15 13
19 19 N 1.30985 * 119.99840 * 32.30779 * 18 16 15
20 20 Si 1.86797 * 119.99875 * 212.30549 * 18 16 15
21 21 H 1.48502 * 109.47300 * 95.00066 * 20 18 16
22 22 H 1.48504 * 109.47202 * 214.99980 * 20 18 16
23 23 H 1.48506 * 109.47390 * 335.00010 * 20 18 16
24 24 C 1.46498 * 119.99725 * 3.81567 * 15 13 12
25 25 C 1.53002 * 117.50093 * 311.32427 * 24 15 13
26 26 C 1.52998 * 117.50245 * 242.69963 * 24 15 13
27 27 C 1.38262 * 120.11517 * 0.24283 * 6 5 4
28 28 C 1.38143 * 120.05278 * 359.46211 * 27 6 5
29 29 H 1.09000 * 109.46892 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.47749 * 299.99926 * 1 2 3
31 31 H 1.09002 * 109.47252 * 59.99910 * 1 2 3
32 32 H 1.08002 * 120.03003 * 0.02562 * 4 3 2
33 33 H 1.08001 * 119.96586 * 180.02562 * 5 4 3
34 34 H 1.09000 * 109.46913 * 329.99474 * 7 6 5
35 35 H 1.09001 * 109.46865 * 210.00067 * 7 6 5
36 36 H 0.97005 * 119.99865 * 359.97438 * 8 7 6
37 37 H 1.07999 * 119.99868 * 0.02562 * 11 9 8
38 38 H 1.08008 * 119.99770 * 0.27525 * 12 11 9
39 39 H 0.97005 * 119.99531 * 180.02562 * 19 18 16
40 40 H 1.09005 * 115.54957 * 97.02856 * 24 15 13
41 41 H 1.08996 * 117.49811 * 359.97438 * 25 24 15
42 42 H 1.08999 * 117.49937 * 145.02207 * 25 24 15
43 43 H 1.08995 * 117.50515 * 214.98525 * 26 24 15
44 44 H 1.09006 * 117.49978 * 359.97438 * 26 24 15
45 45 H 1.08003 * 119.97103 * 179.70289 * 27 6 5
46 46 H 1.07999 * 120.02893 * 180.24973 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2110 0.0000
4 6 3.4312 1.2850 0.0005
5 6 4.0559 2.5172 0.0011
6 6 3.3016 3.6759 0.0017
7 6 3.9858 5.0187 0.0028
8 7 4.2080 5.4548 -1.3780
9 6 4.8092 6.6358 -1.6231
10 8 5.1675 7.3393 -0.6982
11 6 5.0320 7.0743 -3.0105
12 6 5.6281 8.2577 -3.2557
13 6 5.8452 8.6985 -4.6418
14 8 5.5906 7.9486 -5.5657
15 7 6.3263 9.9331 -4.8888
16 6 6.4540 10.3694 -6.1713
17 1 6.0594 9.7784 -6.9846
18 6 7.0952 11.5814 -6.4358
19 7 8.0764 11.9846 -5.6674
20 14 6.5538 12.6274 -7.8856
21 1 5.5815 13.6499 -7.4226
22 1 7.7366 13.3018 -8.4786
23 1 5.9129 11.7623 -8.9084
24 6 6.7115 10.8052 -3.7766
25 6 5.7172 10.9615 -2.6242
26 6 5.9389 12.1146 -3.6051
27 6 1.9209 3.6049 0.0068
28 6 1.2914 2.3752 0.0001
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8899
31 1 -0.3634 0.5139 -0.8900
32 1 4.0208 0.3801 0.0005
33 1 5.1344 2.5752 0.0011
34 1 4.9435 4.9381 0.5170
35 1 3.3575 5.7461 0.5170
36 1 3.9225 4.8935 -2.1158
37 1 4.7133 6.4498 -3.8319
38 1 5.9465 8.8825 -2.4342
39 1 8.5215 12.8267 -5.8510
40 1 7.7732 10.8113 -3.5299
41 1 4.7762 10.4159 -2.6939
42 1 6.1247 11.0705 -1.6192
43 1 6.4922 12.9821 -3.2455
44 1 5.1442 12.3275 -4.3202
45 1 1.3339 4.5115 0.0121
46 1 0.2128 2.3201 0.0001
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000900360200.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:15
Heat of formation + Delta-G solvation = -18.780908 kcal
Electronic energy + Delta-G solvation = -28290.420003 eV
Core-core repulsion = 24147.663117 eV
Total energy + Delta-G solvation = -4142.756886 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.157 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.56176 -39.49533 -38.85424 -37.94547 -36.12613 -34.64546 -33.50117 -32.01824
-31.48703 -31.35884 -30.83744 -28.06704 -26.45599 -25.38293 -23.35502 -22.99366
-21.77294 -21.61229 -21.34502 -20.08104 -18.58377 -18.30364 -17.39482 -16.95775
-16.67331 -16.17917 -16.07594 -15.57964 -15.23370 -15.13372 -14.97449 -14.46950
-14.31189 -14.15548 -14.07415 -13.79490 -13.57088 -13.19331 -12.98562 -12.81703
-12.58317 -12.47388 -12.30650 -11.84057 -11.74733 -11.45915 -11.27597 -11.20524
-11.17283 -10.83719 -10.49689 -10.41628 -10.03339 -9.75282 -9.50186 -9.36349
-9.16538 -8.98234 -8.81709 -8.52950 -8.41545 -8.01087 -6.66074 -3.82370
0.95434 1.00128 1.43793 2.86222 3.06778 3.16473 3.18260 3.23233
3.48570 3.66623 3.99372 4.26949 4.39320 4.46341 4.51872 4.56367
4.64067 4.66968 4.71737 4.97792 5.01431 5.02509 5.04097 5.17463
5.26235 5.42563 5.57540 5.63197 5.69481 5.70283 5.82602 5.87307
5.88352 5.96999 6.15514 6.24706 6.28968 6.36758 6.47035 6.55595
6.68890 6.79952 6.86272 6.98211 7.06171 7.34706 7.67066 7.93077
8.32363 8.45511 9.03953 9.25491 9.92201 10.38616
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.024179 B = 0.001760 C = 0.001703
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1157.738987 B =15901.294997 C =16438.637952
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.318 6.318
3 C 0.131 3.869
4 C -0.153 4.153
5 C -0.060 4.060
6 C -0.143 4.143
7 C 0.167 3.833
8 N -0.728 5.728
9 C 0.552 3.448
10 O -0.549 6.549
11 C -0.207 4.207
12 C -0.069 4.069
13 C 0.433 3.567
14 O -0.598 6.598
15 N -0.384 5.384
16 C -0.319 4.319
17 H 0.113 0.887
18 C 0.051 3.949
19 N -0.824 5.824
20 Si 0.910 3.090
21 H -0.274 1.274
22 H -0.282 1.282
23 H -0.265 1.265
24 C 0.112 3.888
25 C -0.211 4.211
26 C -0.160 4.160
27 C -0.059 4.059
28 C -0.210 4.210
29 H 0.100 0.900
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.132 0.868
33 H 0.133 0.867
34 H 0.075 0.925
35 H 0.074 0.926
36 H 0.403 0.597
37 H 0.133 0.867
38 H 0.138 0.862
39 H 0.274 0.726
40 H 0.120 0.880
41 H 0.092 0.908
42 H 0.097 0.903
43 H 0.089 0.911
44 H 0.089 0.911
45 H 0.128 0.872
46 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.685 -15.399 13.539 23.600
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.232 6.232
3 C 0.086 3.914
4 C -0.172 4.172
5 C -0.078 4.078
6 C -0.144 4.144
7 C 0.043 3.957
8 N -0.381 5.381
9 C 0.342 3.658
10 O -0.428 6.428
11 C -0.231 4.231
12 C -0.092 4.092
13 C 0.226 3.774
14 O -0.486 6.486
15 N -0.097 5.097
16 C -0.446 4.446
17 H 0.131 0.869
18 C -0.160 4.160
19 N -0.458 5.458
20 Si 0.736 3.264
21 H -0.200 1.200
22 H -0.208 1.208
23 H -0.189 1.189
24 C 0.006 3.994
25 C -0.249 4.249
26 C -0.198 4.198
27 C -0.078 4.078
28 C -0.229 4.229
29 H 0.118 0.882
30 H 0.074 0.926
31 H 0.075 0.925
32 H 0.150 0.850
33 H 0.151 0.849
34 H 0.093 0.907
35 H 0.092 0.908
36 H 0.237 0.763
37 H 0.150 0.850
38 H 0.156 0.844
39 H 0.085 0.915
40 H 0.138 0.862
41 H 0.111 0.889
42 H 0.115 0.885
43 H 0.108 0.892
44 H 0.108 0.892
45 H 0.146 0.854
46 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -11.291 -15.241 13.772 23.440
hybrid contribution -0.561 0.535 -0.950 1.226
sum -11.851 -14.707 12.822 22.829
Atomic orbital electron populations
1.23078 0.78223 1.04049 1.01501 1.86078 1.21545 1.26989 1.88554
1.19111 0.92448 0.84173 0.95693 1.20450 0.91353 0.98756 1.06649
1.20961 1.00164 0.90808 0.95870 1.19836 0.93718 0.94892 1.05909
1.20064 1.00069 0.91480 0.84053 1.45953 1.62466 1.21503 1.08148
1.18689 0.76799 0.80404 0.89860 1.90750 1.51375 1.54384 1.46334
1.22734 1.06559 0.99487 0.94351 1.23938 0.92070 0.95092 0.98106
1.17814 0.88546 0.82650 0.88355 1.90621 1.59147 1.53296 1.45583
1.43082 1.50445 1.10636 1.05583 1.19753 1.36344 1.04365 0.84156
0.86898 1.25311 0.93849 0.97968 0.98847 1.69927 1.15351 1.21163
1.39332 0.86163 0.78837 0.80054 0.81388 1.19978 1.20820 1.18894
1.21405 0.95786 0.94229 0.87942 1.23604 1.01747 1.04152 0.95385
1.22938 1.03098 0.92625 1.01133 1.20918 0.93866 0.97275 0.95710
1.21242 1.00153 0.92246 1.09267 0.88171 0.92567 0.92479 0.84990
0.84903 0.90719 0.90818 0.76301 0.84973 0.84416 0.91497 0.86221
0.88939 0.88483 0.89238 0.89219 0.85398 0.85317
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.13 9.81 101.05 0.99 1.12 16
2 O -0.32 -2.75 10.50 -19.45 -0.20 -2.95 16
3 C 0.13 1.19 6.69 -39.22 -0.26 0.92 16
4 C -0.15 -1.35 9.99 -39.43 -0.39 -1.74 16
5 C -0.06 -0.51 9.69 -39.60 -0.38 -0.90 16
6 C -0.14 -1.30 5.25 -104.60 -0.55 -1.85 16
7 C 0.17 1.77 5.80 -5.19 -0.03 1.74 16
8 N -0.73 -9.01 5.54 -62.64 -0.35 -9.35 16
9 C 0.55 9.09 7.77 -12.63 -0.10 8.99 16
10 O -0.55 -10.57 16.25 5.27 0.09 -10.49 16
11 C -0.21 -3.78 9.59 -37.18 -0.36 -4.14 16
12 C -0.07 -1.43 7.58 -37.24 -0.28 -1.71 16
13 C 0.43 10.88 7.48 -12.68 -0.09 10.79 16
14 O -0.60 -16.81 15.85 5.20 0.08 -16.73 16
15 N -0.38 -9.71 2.91 -109.10 -0.32 -10.03 16
16 C -0.32 -8.61 9.27 -15.15 -0.14 -8.75 16
17 H 0.11 3.24 7.36 -52.48 -0.39 2.85 16
18 C 0.05 1.27 4.46 -17.39 -0.08 1.19 16
19 N -0.82 -20.40 11.09 55.53 0.62 -19.79 16
20 Si 0.91 19.45 29.66 -169.99 -5.04 14.40 16
21 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16
22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
23 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16
24 C 0.11 2.45 3.78 -67.93 -0.26 2.19 16
25 C -0.21 -3.87 7.74 -26.73 -0.21 -4.08 16
26 C -0.16 -3.16 9.11 -26.73 -0.24 -3.40 16
27 C -0.06 -0.50 9.69 -39.61 -0.38 -0.89 16
28 C -0.21 -1.71 9.04 -39.43 -0.36 -2.06 16
29 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16
30 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16
31 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16
32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16
33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16
34 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16
35 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16
36 H 0.40 4.27 8.45 -40.82 -0.34 3.93 16
37 H 0.13 2.37 7.54 -52.49 -0.40 1.97 16
38 H 0.14 2.75 4.64 -52.48 -0.24 2.51 16
39 H 0.27 6.35 8.30 -40.82 -0.34 6.01 16
40 H 0.12 2.73 7.77 -51.93 -0.40 2.32 16
41 H 0.09 1.73 6.82 -51.93 -0.35 1.38 16
42 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16
43 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16
44 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16
45 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16
46 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16
LS Contribution 391.29 15.07 5.90 5.90
Total: -1.00 -32.12 391.29 -8.54 -40.67
By element:
Atomic # 1 Polarization: 17.14 SS G_CDS: -6.19 Total: 10.95 kcal
Atomic # 6 Polarization: 0.55 SS G_CDS: -3.13 Total: -2.57 kcal
Atomic # 7 Polarization: -39.12 SS G_CDS: -0.05 Total: -39.17 kcal
Atomic # 8 Polarization: -30.14 SS G_CDS: -0.04 Total: -30.17 kcal
Atomic # 14 Polarization: 19.45 SS G_CDS: -5.04 Total: 14.40 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -32.12 -8.54 -40.67 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000900360200.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.887 kcal
(2) G-P(sol) polarization free energy of solvation -32.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.237 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.781 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds